Experiment: Recovery broth with Ticarcillin 4e-04 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS14330 and BBR_RS14335 are separated by 137 nucleotides BBR_RS14335 and BBR_RS14340 are separated by 148 nucleotides BBR_RS14340 and BBR_RS14345 are separated by 3 nucleotides BBR_RS14345 and BBR_RS14350 are separated by 168 nucleotides
BBR_RS14330: BBR_RS14330 - glycogen debranching enzyme GlgX, at 990,756 to 992,867
_RS14330
BBR_RS14335: BBR_RS14335 - hypothetical protein, at 993,005 to 993,205
_RS14335
BBR_RS14340: BBR_RS14340 - helix-turn-helix domain-containing protein, at 993,354 to 993,839
_RS14340
BBR_RS14345: BBR_RS14345 - hypothetical protein, at 993,843 to 994,493
_RS14345
BBR_RS14350: BBR_RS14350 - hypothetical protein, at 994,662 to 994,889
_RS14350
Position (kb) 993
994 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 992.546 kb on - strand, within BBR_RS14330 at 992.573 kb on + strand, within BBR_RS14330 at 992.678 kb on + strand at 992.788 kb on + strand at 992.910 kb on + strand at 992.917 kb on + strand at 992.917 kb on + strand at 992.956 kb on - strand at 992.962 kb on + strand at 993.000 kb on + strand at 993.101 kb on + strand, within BBR_RS14335 at 993.101 kb on + strand, within BBR_RS14335 at 993.125 kb on - strand, within BBR_RS14335 at 993.132 kb on + strand, within BBR_RS14335 at 993.132 kb on + strand, within BBR_RS14335 at 993.140 kb on - strand, within BBR_RS14335 at 993.181 kb on + strand, within BBR_RS14335 at 993.189 kb on - strand at 993.286 kb on + strand at 993.294 kb on - strand at 993.304 kb on - strand at 993.371 kb on + strand at 993.390 kb on + strand at 993.519 kb on - strand, within BBR_RS14340 at 993.732 kb on + strand, within BBR_RS14340 at 993.742 kb on + strand, within BBR_RS14340 at 993.760 kb on - strand, within BBR_RS14340 at 993.760 kb on - strand, within BBR_RS14340 at 993.809 kb on - strand at 993.874 kb on - strand at 993.943 kb on + strand, within BBR_RS14345 at 993.943 kb on + strand, within BBR_RS14345 at 993.956 kb on + strand, within BBR_RS14345 at 993.985 kb on - strand, within BBR_RS14345 at 993.995 kb on + strand, within BBR_RS14345 at 994.003 kb on - strand, within BBR_RS14345 at 994.003 kb on - strand, within BBR_RS14345 at 994.088 kb on + strand, within BBR_RS14345 at 994.095 kb on + strand, within BBR_RS14345 at 994.095 kb on + strand, within BBR_RS14345 at 994.105 kb on + strand, within BBR_RS14345 at 994.113 kb on - strand, within BBR_RS14345 at 994.219 kb on - strand, within BBR_RS14345 at 994.266 kb on - strand, within BBR_RS14345 at 994.283 kb on + strand, within BBR_RS14345 at 994.298 kb on + strand, within BBR_RS14345 at 994.328 kb on + strand, within BBR_RS14345 at 994.386 kb on - strand, within BBR_RS14345 at 994.428 kb on - strand, within BBR_RS14345 at 994.507 kb on + strand at 994.510 kb on - strand at 994.606 kb on + strand at 994.614 kb on - strand at 994.614 kb on - strand at 994.702 kb on - strand, within BBR_RS14350 at 994.724 kb on - strand, within BBR_RS14350 at 994.729 kb on + strand, within BBR_RS14350 at 994.747 kb on - strand, within BBR_RS14350 at 994.770 kb on + strand, within BBR_RS14350 at 994.794 kb on + strand, within BBR_RS14350
Per-strain Table
Position Strand Gene LocusTag Fraction Recovery broth with Ticarcillin 4e-04 mM remove 992,546 - BBR_RS14330 0.85 +1.6 992,573 + BBR_RS14330 0.86 +1.3 992,678 + +3.6 992,788 + +2.0 992,910 + -0.3 992,917 + -0.7 992,917 + +2.6 992,956 - -1.2 992,962 + +2.6 993,000 + -0.7 993,101 + BBR_RS14335 0.48 +0.3 993,101 + BBR_RS14335 0.48 -0.6 993,125 - BBR_RS14335 0.60 +0.7 993,132 + BBR_RS14335 0.63 +1.0 993,132 + BBR_RS14335 0.63 -0.6 993,140 - BBR_RS14335 0.67 +1.3 993,181 + BBR_RS14335 0.88 -0.6 993,189 - +1.4 993,286 + +0.4 993,294 - +0.8 993,304 - +0.6 993,371 + -0.5 993,390 + +0.2 993,519 - BBR_RS14340 0.34 +2.5 993,732 + BBR_RS14340 0.78 +1.4 993,742 + BBR_RS14340 0.80 +0.3 993,760 - BBR_RS14340 0.84 +1.8 993,760 - BBR_RS14340 0.84 +0.1 993,809 - +0.9 993,874 - -2.1 993,943 + BBR_RS14345 0.15 -1.0 993,943 + BBR_RS14345 0.15 -0.6 993,956 + BBR_RS14345 0.17 -1.3 993,985 - BBR_RS14345 0.22 -1.0 993,995 + BBR_RS14345 0.23 +0.6 994,003 - BBR_RS14345 0.25 +1.4 994,003 - BBR_RS14345 0.25 +1.2 994,088 + BBR_RS14345 0.38 +2.0 994,095 + BBR_RS14345 0.39 -1.4 994,095 + BBR_RS14345 0.39 -1.4 994,105 + BBR_RS14345 0.40 -1.0 994,113 - BBR_RS14345 0.41 +4.2 994,219 - BBR_RS14345 0.58 -0.3 994,266 - BBR_RS14345 0.65 +0.5 994,283 + BBR_RS14345 0.68 +4.0 994,298 + BBR_RS14345 0.70 -0.3 994,328 + BBR_RS14345 0.75 -1.0 994,386 - BBR_RS14345 0.83 +0.3 994,428 - BBR_RS14345 0.90 -0.6 994,507 + +0.0 994,510 - +0.1 994,606 + +0.9 994,614 - +0.3 994,614 - -0.1 994,702 - BBR_RS14350 0.18 -0.4 994,724 - BBR_RS14350 0.27 -1.4 994,729 + BBR_RS14350 0.29 -1.6 994,747 - BBR_RS14350 0.37 -0.3 994,770 + BBR_RS14350 0.47 +0.1 994,794 + BBR_RS14350 0.58 -1.2
Or see this region's nucleotide sequence