Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23540

Experiment: soil sample 6; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS23535 and ABZR87_RS23540 are separated by 5 nucleotidesABZR87_RS23540 and ABZR87_RS23545 are separated by 20 nucleotidesABZR87_RS23545 and ABZR87_RS23550 are separated by 9 nucleotides ABZR87_RS23535: ABZR87_RS23535 - RNA polymerase factor sigma-54, at 1,638,701 to 1,640,203 _RS23535 ABZR87_RS23540: ABZR87_RS23540 - glycosyltransferase, at 1,640,209 to 1,641,423 _RS23540 ABZR87_RS23545: ABZR87_RS23545 - DUF2334 domain-containing protein, at 1,641,444 to 1,642,238 _RS23545 ABZR87_RS23550: ABZR87_RS23550 - phosphatase PAP2 family protein, at 1,642,248 to 1,642,784 _RS23550 Position (kb) 1640 1641 1642Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1639.217 kb on + strand, within ABZR87_RS23535at 1639.283 kb on + strand, within ABZR87_RS23535at 1639.308 kb on + strand, within ABZR87_RS23535at 1639.309 kb on - strand, within ABZR87_RS23535at 1639.586 kb on + strand, within ABZR87_RS23535at 1639.586 kb on + strand, within ABZR87_RS23535at 1639.586 kb on + strand, within ABZR87_RS23535at 1639.587 kb on - strand, within ABZR87_RS23535at 1639.682 kb on + strand, within ABZR87_RS23535at 1639.683 kb on - strand, within ABZR87_RS23535at 1639.683 kb on - strand, within ABZR87_RS23535at 1639.683 kb on - strand, within ABZR87_RS23535at 1639.758 kb on + strand, within ABZR87_RS23535at 1639.759 kb on - strand, within ABZR87_RS23535at 1639.841 kb on + strand, within ABZR87_RS23535at 1639.841 kb on + strand, within ABZR87_RS23535at 1639.937 kb on + strand, within ABZR87_RS23535at 1639.937 kb on + strand, within ABZR87_RS23535at 1639.937 kb on + strand, within ABZR87_RS23535at 1639.937 kb on + strand, within ABZR87_RS23535at 1639.937 kb on + strand, within ABZR87_RS23535at 1639.937 kb on + strand, within ABZR87_RS23535at 1639.938 kb on - strand, within ABZR87_RS23535at 1639.938 kb on - strand, within ABZR87_RS23535at 1639.938 kb on - strand, within ABZR87_RS23535at 1639.973 kb on + strand, within ABZR87_RS23535at 1639.974 kb on - strand, within ABZR87_RS23535at 1639.974 kb on - strand, within ABZR87_RS23535at 1639.974 kb on - strand, within ABZR87_RS23535at 1640.153 kb on + strandat 1640.154 kb on - strandat 1640.154 kb on - strandat 1640.329 kb on + strandat 1640.492 kb on + strand, within ABZR87_RS23540at 1640.492 kb on + strand, within ABZR87_RS23540at 1640.493 kb on - strand, within ABZR87_RS23540at 1640.493 kb on - strand, within ABZR87_RS23540at 1640.493 kb on - strand, within ABZR87_RS23540at 1640.493 kb on - strand, within ABZR87_RS23540at 1640.493 kb on - strand, within ABZR87_RS23540at 1640.493 kb on - strand, within ABZR87_RS23540at 1640.605 kb on + strand, within ABZR87_RS23540at 1640.605 kb on + strand, within ABZR87_RS23540at 1640.605 kb on + strand, within ABZR87_RS23540at 1640.606 kb on - strand, within ABZR87_RS23540at 1640.606 kb on - strand, within ABZR87_RS23540at 1640.674 kb on + strand, within ABZR87_RS23540at 1640.674 kb on + strand, within ABZR87_RS23540at 1640.674 kb on + strand, within ABZR87_RS23540at 1640.689 kb on + strand, within ABZR87_RS23540at 1640.689 kb on + strand, within ABZR87_RS23540at 1640.689 kb on + strand, within ABZR87_RS23540at 1640.690 kb on - strand, within ABZR87_RS23540at 1640.704 kb on - strand, within ABZR87_RS23540at 1640.873 kb on - strand, within ABZR87_RS23540at 1640.910 kb on - strand, within ABZR87_RS23540at 1640.910 kb on - strand, within ABZR87_RS23540at 1640.910 kb on - strand, within ABZR87_RS23540at 1641.010 kb on + strand, within ABZR87_RS23540at 1641.010 kb on + strand, within ABZR87_RS23540at 1641.010 kb on + strand, within ABZR87_RS23540at 1641.010 kb on + strand, within ABZR87_RS23540at 1641.010 kb on + strand, within ABZR87_RS23540at 1641.011 kb on - strand, within ABZR87_RS23540at 1641.292 kb on + strand, within ABZR87_RS23540at 1641.332 kb on - strandat 1641.332 kb on - strandat 1641.453 kb on + strandat 1641.454 kb on - strandat 1641.573 kb on + strand, within ABZR87_RS23545at 1641.897 kb on + strand, within ABZR87_RS23545at 1641.898 kb on - strand, within ABZR87_RS23545at 1641.898 kb on - strand, within ABZR87_RS23545at 1641.922 kb on - strand, within ABZR87_RS23545at 1641.922 kb on - strand, within ABZR87_RS23545at 1641.966 kb on + strand, within ABZR87_RS23545at 1641.966 kb on + strand, within ABZR87_RS23545at 1641.966 kb on + strand, within ABZR87_RS23545at 1641.966 kb on + strand, within ABZR87_RS23545at 1641.966 kb on + strand, within ABZR87_RS23545at 1641.967 kb on - strand, within ABZR87_RS23545at 1641.967 kb on - strand, within ABZR87_RS23545at 1641.967 kb on - strand, within ABZR87_RS23545at 1641.968 kb on + strand, within ABZR87_RS23545at 1641.969 kb on - strand, within ABZR87_RS23545at 1641.969 kb on - strand, within ABZR87_RS23545at 1642.005 kb on + strand, within ABZR87_RS23545at 1642.006 kb on - strand, within ABZR87_RS23545at 1642.008 kb on + strand, within ABZR87_RS23545at 1642.008 kb on + strand, within ABZR87_RS23545at 1642.008 kb on + strand, within ABZR87_RS23545at 1642.009 kb on - strand, within ABZR87_RS23545at 1642.233 kb on + strandat 1642.233 kb on + strandat 1642.233 kb on + strandat 1642.234 kb on - strandat 1642.234 kb on - strandat 1642.249 kb on + strandat 1642.250 kb on - strandat 1642.250 kb on - strandat 1642.393 kb on + strand, within ABZR87_RS23550at 1642.393 kb on + strand, within ABZR87_RS23550at 1642.397 kb on - strand, within ABZR87_RS23550

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 6; outgrowth in LB
remove
1,639,217 + ABZR87_RS23535 0.34 -0.2
1,639,283 + ABZR87_RS23535 0.39 +2.1
1,639,308 + ABZR87_RS23535 0.40 -0.2
1,639,309 - ABZR87_RS23535 0.40 +0.1
1,639,586 + ABZR87_RS23535 0.59 +0.1
1,639,586 + ABZR87_RS23535 0.59 -0.5
1,639,586 + ABZR87_RS23535 0.59 +1.3
1,639,587 - ABZR87_RS23535 0.59 +0.2
1,639,682 + ABZR87_RS23535 0.65 -0.2
1,639,683 - ABZR87_RS23535 0.65 +0.3
1,639,683 - ABZR87_RS23535 0.65 +0.4
1,639,683 - ABZR87_RS23535 0.65 -0.4
1,639,758 + ABZR87_RS23535 0.70 +0.6
1,639,759 - ABZR87_RS23535 0.70 +1.9
1,639,841 + ABZR87_RS23535 0.76 -0.2
1,639,841 + ABZR87_RS23535 0.76 +1.1
1,639,937 + ABZR87_RS23535 0.82 -0.0
1,639,937 + ABZR87_RS23535 0.82 -1.2
1,639,937 + ABZR87_RS23535 0.82 +0.1
1,639,937 + ABZR87_RS23535 0.82 -1.5
1,639,937 + ABZR87_RS23535 0.82 -0.9
1,639,937 + ABZR87_RS23535 0.82 +0.4
1,639,938 - ABZR87_RS23535 0.82 -0.8
1,639,938 - ABZR87_RS23535 0.82 -0.1
1,639,938 - ABZR87_RS23535 0.82 -0.4
1,639,973 + ABZR87_RS23535 0.85 +0.4
1,639,974 - ABZR87_RS23535 0.85 +0.1
1,639,974 - ABZR87_RS23535 0.85 -0.7
1,639,974 - ABZR87_RS23535 0.85 -0.3
1,640,153 + +0.4
1,640,154 - +0.3
1,640,154 - +0.3
1,640,329 + +1.2
1,640,492 + ABZR87_RS23540 0.23 -1.6
1,640,492 + ABZR87_RS23540 0.23 -0.6
1,640,493 - ABZR87_RS23540 0.23 -0.3
1,640,493 - ABZR87_RS23540 0.23 +0.2
1,640,493 - ABZR87_RS23540 0.23 -0.3
1,640,493 - ABZR87_RS23540 0.23 -1.4
1,640,493 - ABZR87_RS23540 0.23 -0.4
1,640,493 - ABZR87_RS23540 0.23 +0.2
1,640,605 + ABZR87_RS23540 0.33 +0.8
1,640,605 + ABZR87_RS23540 0.33 +0.1
1,640,605 + ABZR87_RS23540 0.33 -2.4
1,640,606 - ABZR87_RS23540 0.33 -0.7
1,640,606 - ABZR87_RS23540 0.33 -0.3
1,640,674 + ABZR87_RS23540 0.38 +0.1
1,640,674 + ABZR87_RS23540 0.38 +0.4
1,640,674 + ABZR87_RS23540 0.38 -0.7
1,640,689 + ABZR87_RS23540 0.40 +0.3
1,640,689 + ABZR87_RS23540 0.40 +0.0
1,640,689 + ABZR87_RS23540 0.40 -0.2
1,640,690 - ABZR87_RS23540 0.40 +0.3
1,640,704 - ABZR87_RS23540 0.41 +1.6
1,640,873 - ABZR87_RS23540 0.55 -1.3
1,640,910 - ABZR87_RS23540 0.58 -0.9
1,640,910 - ABZR87_RS23540 0.58 +0.8
1,640,910 - ABZR87_RS23540 0.58 +0.8
1,641,010 + ABZR87_RS23540 0.66 -0.9
1,641,010 + ABZR87_RS23540 0.66 -0.6
1,641,010 + ABZR87_RS23540 0.66 -0.6
1,641,010 + ABZR87_RS23540 0.66 -0.3
1,641,010 + ABZR87_RS23540 0.66 -2.4
1,641,011 - ABZR87_RS23540 0.66 -0.4
1,641,292 + ABZR87_RS23540 0.89 -0.4
1,641,332 - +0.7
1,641,332 - -2.8
1,641,453 + +0.2
1,641,454 - -0.5
1,641,573 + ABZR87_RS23545 0.16 -0.2
1,641,897 + ABZR87_RS23545 0.57 -0.4
1,641,898 - ABZR87_RS23545 0.57 +0.0
1,641,898 - ABZR87_RS23545 0.57 +0.9
1,641,922 - ABZR87_RS23545 0.60 -0.6
1,641,922 - ABZR87_RS23545 0.60 +0.2
1,641,966 + ABZR87_RS23545 0.66 -0.4
1,641,966 + ABZR87_RS23545 0.66 +0.0
1,641,966 + ABZR87_RS23545 0.66 -0.9
1,641,966 + ABZR87_RS23545 0.66 -0.0
1,641,966 + ABZR87_RS23545 0.66 +0.4
1,641,967 - ABZR87_RS23545 0.66 +1.4
1,641,967 - ABZR87_RS23545 0.66 +0.7
1,641,967 - ABZR87_RS23545 0.66 -0.6
1,641,968 + ABZR87_RS23545 0.66 -0.5
1,641,969 - ABZR87_RS23545 0.66 -0.7
1,641,969 - ABZR87_RS23545 0.66 +0.4
1,642,005 + ABZR87_RS23545 0.71 -0.4
1,642,006 - ABZR87_RS23545 0.71 +0.1
1,642,008 + ABZR87_RS23545 0.71 -0.3
1,642,008 + ABZR87_RS23545 0.71 +0.2
1,642,008 + ABZR87_RS23545 0.71 +0.4
1,642,009 - ABZR87_RS23545 0.71 -0.1
1,642,233 + -0.4
1,642,233 + +0.2
1,642,233 + +0.6
1,642,234 - -0.6
1,642,234 - +1.2
1,642,249 + +1.1
1,642,250 - -0.2
1,642,250 - +1.2
1,642,393 + ABZR87_RS23550 0.27 +1.1
1,642,393 + ABZR87_RS23550 0.27 -0.3
1,642,397 - ABZR87_RS23550 0.28 -0.4

Or see this region's nucleotide sequence