Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21170

Experiment: soil sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21165 and ABZR87_RS21170 are separated by 11 nucleotidesABZR87_RS21170 and ABZR87_RS21175 are separated by 30 nucleotides ABZR87_RS21165: ABZR87_RS21165 - acyl-CoA dehydrogenase family protein, at 1,132,604 to 1,133,860 _RS21165 ABZR87_RS21170: ABZR87_RS21170 - ABC transporter ATP-binding protein, at 1,133,872 to 1,134,648 _RS21170 ABZR87_RS21175: ABZR87_RS21175 - acyl-CoA dehydrogenase family protein, at 1,134,679 to 1,135,881 _RS21175 Position (kb) 1133 1134 1135Strain fitness (log2 ratio) -2 -1 0 1 2at 1133.069 kb on + strand, within ABZR87_RS21165at 1133.069 kb on + strand, within ABZR87_RS21165at 1133.069 kb on + strand, within ABZR87_RS21165at 1133.069 kb on + strand, within ABZR87_RS21165at 1133.070 kb on - strand, within ABZR87_RS21165at 1133.072 kb on + strand, within ABZR87_RS21165at 1133.072 kb on + strand, within ABZR87_RS21165at 1133.073 kb on - strand, within ABZR87_RS21165at 1133.234 kb on + strand, within ABZR87_RS21165at 1133.235 kb on - strand, within ABZR87_RS21165at 1133.291 kb on + strand, within ABZR87_RS21165at 1133.292 kb on - strand, within ABZR87_RS21165at 1133.306 kb on + strand, within ABZR87_RS21165at 1133.306 kb on + strand, within ABZR87_RS21165at 1133.525 kb on + strand, within ABZR87_RS21165at 1133.525 kb on + strand, within ABZR87_RS21165at 1133.671 kb on + strand, within ABZR87_RS21165at 1133.795 kb on + strandat 1133.795 kb on + strandat 1133.921 kb on - strandat 1134.511 kb on + strand, within ABZR87_RS21170at 1134.512 kb on - strand, within ABZR87_RS21170at 1134.512 kb on - strand, within ABZR87_RS21170at 1134.603 kb on - strandat 1134.868 kb on + strand, within ABZR87_RS21175at 1134.868 kb on + strand, within ABZR87_RS21175at 1134.933 kb on + strand, within ABZR87_RS21175at 1134.934 kb on - strand, within ABZR87_RS21175at 1135.111 kb on + strand, within ABZR87_RS21175at 1135.111 kb on + strand, within ABZR87_RS21175at 1135.298 kb on + strand, within ABZR87_RS21175at 1135.299 kb on - strand, within ABZR87_RS21175at 1135.453 kb on + strand, within ABZR87_RS21175at 1135.517 kb on - strand, within ABZR87_RS21175

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 6; outgrowth in LB
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1,133,069 + ABZR87_RS21165 0.37 +0.3
1,133,069 + ABZR87_RS21165 0.37 +0.2
1,133,069 + ABZR87_RS21165 0.37 +0.6
1,133,069 + ABZR87_RS21165 0.37 -1.8
1,133,070 - ABZR87_RS21165 0.37 -1.0
1,133,072 + ABZR87_RS21165 0.37 -0.4
1,133,072 + ABZR87_RS21165 0.37 +0.6
1,133,073 - ABZR87_RS21165 0.37 +0.3
1,133,234 + ABZR87_RS21165 0.50 -0.5
1,133,235 - ABZR87_RS21165 0.50 -1.0
1,133,291 + ABZR87_RS21165 0.55 -1.9
1,133,292 - ABZR87_RS21165 0.55 +0.4
1,133,306 + ABZR87_RS21165 0.56 -0.0
1,133,306 + ABZR87_RS21165 0.56 -0.6
1,133,525 + ABZR87_RS21165 0.73 +0.1
1,133,525 + ABZR87_RS21165 0.73 +0.5
1,133,671 + ABZR87_RS21165 0.85 +0.4
1,133,795 + +0.4
1,133,795 + +2.5
1,133,921 - +0.3
1,134,511 + ABZR87_RS21170 0.82 -0.2
1,134,512 - ABZR87_RS21170 0.82 -0.9
1,134,512 - ABZR87_RS21170 0.82 -0.3
1,134,603 - -0.8
1,134,868 + ABZR87_RS21175 0.16 +1.3
1,134,868 + ABZR87_RS21175 0.16 +1.6
1,134,933 + ABZR87_RS21175 0.21 -0.1
1,134,934 - ABZR87_RS21175 0.21 +0.4
1,135,111 + ABZR87_RS21175 0.36 +0.7
1,135,111 + ABZR87_RS21175 0.36 +2.0
1,135,298 + ABZR87_RS21175 0.51 -1.2
1,135,299 - ABZR87_RS21175 0.52 +0.2
1,135,453 + ABZR87_RS21175 0.64 -0.2
1,135,517 - ABZR87_RS21175 0.70 +0.4

Or see this region's nucleotide sequence