Experiment: soil sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20375 and ABZR87_RS20380 are separated by 43 nucleotides ABZR87_RS20380 and ABZR87_RS20385 are separated by 58 nucleotides ABZR87_RS20385 and ABZR87_RS20390 are separated by 9 nucleotides
ABZR87_RS20375: ABZR87_RS20375 - ABC transporter permease subunit, at 959,267 to 960,304
_RS20375
ABZR87_RS20380: ABZR87_RS20380 - ABC transporter substrate-binding protein, at 960,348 to 961,355
_RS20380
ABZR87_RS20385: ABZR87_RS20385 - class II aldolase/adducin family protein, at 961,414 to 962,253
_RS20385
ABZR87_RS20390: ABZR87_RS20390 - LLM class flavin-dependent oxidoreductase, at 962,263 to 963,354
_RS20390
Position (kb) 960
961
962 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 959.373 kb on + strand, within ABZR87_RS20375 at 959.373 kb on + strand, within ABZR87_RS20375 at 959.373 kb on + strand, within ABZR87_RS20375 at 959.373 kb on + strand, within ABZR87_RS20375 at 959.373 kb on + strand, within ABZR87_RS20375 at 959.374 kb on - strand, within ABZR87_RS20375 at 959.374 kb on - strand, within ABZR87_RS20375 at 959.386 kb on - strand, within ABZR87_RS20375 at 959.386 kb on - strand, within ABZR87_RS20375 at 959.386 kb on - strand, within ABZR87_RS20375 at 959.415 kb on + strand, within ABZR87_RS20375 at 959.492 kb on + strand, within ABZR87_RS20375 at 959.493 kb on - strand, within ABZR87_RS20375 at 959.493 kb on - strand, within ABZR87_RS20375 at 959.583 kb on + strand, within ABZR87_RS20375 at 959.584 kb on - strand, within ABZR87_RS20375 at 959.586 kb on + strand, within ABZR87_RS20375 at 959.676 kb on + strand, within ABZR87_RS20375 at 959.694 kb on + strand, within ABZR87_RS20375 at 959.695 kb on - strand, within ABZR87_RS20375 at 959.695 kb on - strand, within ABZR87_RS20375 at 959.764 kb on - strand, within ABZR87_RS20375 at 959.854 kb on + strand, within ABZR87_RS20375 at 959.854 kb on + strand, within ABZR87_RS20375 at 959.895 kb on + strand, within ABZR87_RS20375 at 959.895 kb on + strand, within ABZR87_RS20375 at 959.895 kb on + strand, within ABZR87_RS20375 at 959.896 kb on - strand, within ABZR87_RS20375 at 959.896 kb on - strand, within ABZR87_RS20375 at 960.367 kb on + strand at 960.368 kb on - strand at 960.410 kb on + strand at 960.439 kb on + strand at 960.487 kb on + strand, within ABZR87_RS20380 at 960.488 kb on - strand, within ABZR87_RS20380 at 960.488 kb on - strand, within ABZR87_RS20380 at 960.541 kb on + strand, within ABZR87_RS20380 at 960.542 kb on - strand, within ABZR87_RS20380 at 960.542 kb on - strand, within ABZR87_RS20380 at 960.542 kb on - strand, within ABZR87_RS20380 at 960.724 kb on + strand, within ABZR87_RS20380 at 960.725 kb on - strand, within ABZR87_RS20380 at 960.725 kb on - strand, within ABZR87_RS20380 at 960.754 kb on + strand, within ABZR87_RS20380 at 960.755 kb on - strand, within ABZR87_RS20380 at 961.132 kb on + strand, within ABZR87_RS20380 at 961.132 kb on + strand, within ABZR87_RS20380 at 961.132 kb on + strand, within ABZR87_RS20380 at 961.132 kb on + strand, within ABZR87_RS20380 at 961.255 kb on + strand at 961.255 kb on + strand at 961.256 kb on - strand at 961.317 kb on + strand at 961.318 kb on - strand at 961.383 kb on - strand at 961.416 kb on - strand at 961.454 kb on + strand at 961.509 kb on + strand, within ABZR87_RS20385 at 961.509 kb on + strand, within ABZR87_RS20385 at 961.509 kb on + strand, within ABZR87_RS20385 at 961.598 kb on + strand, within ABZR87_RS20385 at 961.598 kb on + strand, within ABZR87_RS20385 at 961.599 kb on - strand, within ABZR87_RS20385 at 961.599 kb on - strand, within ABZR87_RS20385 at 961.599 kb on - strand, within ABZR87_RS20385 at 961.599 kb on - strand, within ABZR87_RS20385 at 961.772 kb on + strand, within ABZR87_RS20385 at 961.772 kb on + strand, within ABZR87_RS20385 at 961.773 kb on - strand, within ABZR87_RS20385 at 961.838 kb on + strand, within ABZR87_RS20385 at 961.839 kb on - strand, within ABZR87_RS20385 at 961.851 kb on + strand, within ABZR87_RS20385 at 961.852 kb on - strand, within ABZR87_RS20385
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 6; outgrowth in LB remove 959,373 + ABZR87_RS20375 0.10 -0.2 959,373 + ABZR87_RS20375 0.10 +0.6 959,373 + ABZR87_RS20375 0.10 -0.8 959,373 + ABZR87_RS20375 0.10 +0.6 959,373 + ABZR87_RS20375 0.10 +0.6 959,374 - ABZR87_RS20375 0.10 -0.4 959,374 - ABZR87_RS20375 0.10 +0.6 959,386 - ABZR87_RS20375 0.11 +0.2 959,386 - ABZR87_RS20375 0.11 -1.1 959,386 - ABZR87_RS20375 0.11 +1.0 959,415 + ABZR87_RS20375 0.14 -1.1 959,492 + ABZR87_RS20375 0.22 +0.1 959,493 - ABZR87_RS20375 0.22 +0.1 959,493 - ABZR87_RS20375 0.22 +0.3 959,583 + ABZR87_RS20375 0.30 -0.1 959,584 - ABZR87_RS20375 0.31 -0.5 959,586 + ABZR87_RS20375 0.31 -0.9 959,676 + ABZR87_RS20375 0.39 -0.3 959,694 + ABZR87_RS20375 0.41 -1.4 959,695 - ABZR87_RS20375 0.41 +0.4 959,695 - ABZR87_RS20375 0.41 -0.6 959,764 - ABZR87_RS20375 0.48 +1.0 959,854 + ABZR87_RS20375 0.57 -0.6 959,854 + ABZR87_RS20375 0.57 -1.6 959,895 + ABZR87_RS20375 0.61 -0.9 959,895 + ABZR87_RS20375 0.61 -0.6 959,895 + ABZR87_RS20375 0.61 +0.7 959,896 - ABZR87_RS20375 0.61 +0.4 959,896 - ABZR87_RS20375 0.61 -0.6 960,367 + +0.2 960,368 - +0.0 960,410 + -1.0 960,439 + -0.8 960,487 + ABZR87_RS20380 0.14 -0.9 960,488 - ABZR87_RS20380 0.14 -0.2 960,488 - ABZR87_RS20380 0.14 -0.7 960,541 + ABZR87_RS20380 0.19 +0.6 960,542 - ABZR87_RS20380 0.19 -0.5 960,542 - ABZR87_RS20380 0.19 +0.6 960,542 - ABZR87_RS20380 0.19 -0.5 960,724 + ABZR87_RS20380 0.37 -0.6 960,725 - ABZR87_RS20380 0.37 -0.9 960,725 - ABZR87_RS20380 0.37 -0.3 960,754 + ABZR87_RS20380 0.40 -0.2 960,755 - ABZR87_RS20380 0.40 -2.0 961,132 + ABZR87_RS20380 0.78 +0.0 961,132 + ABZR87_RS20380 0.78 -0.3 961,132 + ABZR87_RS20380 0.78 +0.9 961,132 + ABZR87_RS20380 0.78 -0.6 961,255 + -0.3 961,255 + -0.5 961,256 - -0.2 961,317 + -1.1 961,318 - +0.0 961,383 - -0.5 961,416 - +0.3 961,454 + -1.1 961,509 + ABZR87_RS20385 0.11 +0.2 961,509 + ABZR87_RS20385 0.11 +0.6 961,509 + ABZR87_RS20385 0.11 +0.0 961,598 + ABZR87_RS20385 0.22 +0.6 961,598 + ABZR87_RS20385 0.22 -0.5 961,599 - ABZR87_RS20385 0.22 -1.1 961,599 - ABZR87_RS20385 0.22 +0.6 961,599 - ABZR87_RS20385 0.22 +1.0 961,599 - ABZR87_RS20385 0.22 -0.1 961,772 + ABZR87_RS20385 0.43 +0.8 961,772 + ABZR87_RS20385 0.43 +0.2 961,773 - ABZR87_RS20385 0.43 +0.2 961,838 + ABZR87_RS20385 0.50 -1.7 961,839 - ABZR87_RS20385 0.51 +2.9 961,851 + ABZR87_RS20385 0.52 +1.4 961,852 - ABZR87_RS20385 0.52 -0.8
Or see this region's nucleotide sequence