Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18165

Experiment: soil sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18160 and ABZR87_RS18165 are separated by 19 nucleotidesABZR87_RS18165 and ABZR87_RS18170 are separated by 8 nucleotidesABZR87_RS18170 and ABZR87_RS18175 overlap by 4 nucleotides ABZR87_RS18160: ABZR87_RS18160 - hypothetical protein, at 437,668 to 439,149 _RS18160 ABZR87_RS18165: ABZR87_RS18165 - hypothetical protein, at 439,169 to 439,582 _RS18165 ABZR87_RS18170: ABZR87_RS18170 - hypothetical protein, at 439,591 to 439,866 _RS18170 ABZR87_RS18175: ABZR87_RS18175 - formyltetrahydrofolate deformylase, at 439,863 to 440,825 _RS18175 Position (kb) 439 440Strain fitness (log2 ratio) -1 0 1 2at 438.220 kb on + strand, within ABZR87_RS18160at 438.264 kb on + strand, within ABZR87_RS18160at 438.381 kb on - strand, within ABZR87_RS18160at 438.406 kb on + strand, within ABZR87_RS18160at 438.407 kb on - strand, within ABZR87_RS18160at 438.656 kb on - strand, within ABZR87_RS18160at 438.656 kb on - strand, within ABZR87_RS18160at 438.664 kb on + strand, within ABZR87_RS18160at 438.665 kb on - strand, within ABZR87_RS18160at 438.665 kb on - strand, within ABZR87_RS18160at 438.713 kb on + strand, within ABZR87_RS18160at 438.713 kb on + strand, within ABZR87_RS18160at 438.743 kb on - strand, within ABZR87_RS18160at 439.079 kb on - strandat 439.079 kb on - strandat 439.162 kb on - strandat 439.263 kb on + strand, within ABZR87_RS18165at 439.264 kb on - strand, within ABZR87_RS18165at 439.497 kb on + strand, within ABZR87_RS18165at 439.653 kb on - strand, within ABZR87_RS18170at 440.086 kb on + strand, within ABZR87_RS18175at 440.086 kb on + strand, within ABZR87_RS18175at 440.086 kb on + strand, within ABZR87_RS18175at 440.087 kb on - strand, within ABZR87_RS18175at 440.107 kb on + strand, within ABZR87_RS18175at 440.107 kb on + strand, within ABZR87_RS18175at 440.108 kb on - strand, within ABZR87_RS18175at 440.287 kb on - strand, within ABZR87_RS18175at 440.331 kb on + strand, within ABZR87_RS18175at 440.331 kb on + strand, within ABZR87_RS18175at 440.331 kb on + strand, within ABZR87_RS18175at 440.332 kb on - strand, within ABZR87_RS18175at 440.332 kb on - strand, within ABZR87_RS18175at 440.332 kb on - strand, within ABZR87_RS18175at 440.332 kb on - strand, within ABZR87_RS18175at 440.332 kb on - strand, within ABZR87_RS18175at 440.332 kb on - strand, within ABZR87_RS18175at 440.332 kb on - strand, within ABZR87_RS18175at 440.332 kb on - strand, within ABZR87_RS18175at 440.563 kb on + strand, within ABZR87_RS18175at 440.563 kb on + strand, within ABZR87_RS18175

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 6; outgrowth in LB
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438,220 + ABZR87_RS18160 0.37 -0.1
438,264 + ABZR87_RS18160 0.40 -0.7
438,381 - ABZR87_RS18160 0.48 +0.3
438,406 + ABZR87_RS18160 0.50 -0.8
438,407 - ABZR87_RS18160 0.50 -0.6
438,656 - ABZR87_RS18160 0.67 +1.1
438,656 - ABZR87_RS18160 0.67 -0.6
438,664 + ABZR87_RS18160 0.67 +2.1
438,665 - ABZR87_RS18160 0.67 +0.1
438,665 - ABZR87_RS18160 0.67 +0.0
438,713 + ABZR87_RS18160 0.71 -0.1
438,713 + ABZR87_RS18160 0.71 -0.7
438,743 - ABZR87_RS18160 0.73 -1.1
439,079 - -0.2
439,079 - +1.2
439,162 - +0.2
439,263 + ABZR87_RS18165 0.23 -0.4
439,264 - ABZR87_RS18165 0.23 -0.8
439,497 + ABZR87_RS18165 0.79 -0.6
439,653 - ABZR87_RS18170 0.22 +0.2
440,086 + ABZR87_RS18175 0.23 -0.5
440,086 + ABZR87_RS18175 0.23 -0.5
440,086 + ABZR87_RS18175 0.23 -0.2
440,087 - ABZR87_RS18175 0.23 -0.9
440,107 + ABZR87_RS18175 0.25 +1.7
440,107 + ABZR87_RS18175 0.25 +0.5
440,108 - ABZR87_RS18175 0.25 +0.8
440,287 - ABZR87_RS18175 0.44 +0.3
440,331 + ABZR87_RS18175 0.49 -0.2
440,331 + ABZR87_RS18175 0.49 +0.1
440,331 + ABZR87_RS18175 0.49 -1.5
440,332 - ABZR87_RS18175 0.49 -0.6
440,332 - ABZR87_RS18175 0.49 -0.8
440,332 - ABZR87_RS18175 0.49 +0.9
440,332 - ABZR87_RS18175 0.49 +0.5
440,332 - ABZR87_RS18175 0.49 +0.5
440,332 - ABZR87_RS18175 0.49 -1.0
440,332 - ABZR87_RS18175 0.49 -0.5
440,332 - ABZR87_RS18175 0.49 -0.4
440,563 + ABZR87_RS18175 0.73 -0.0
440,563 + ABZR87_RS18175 0.73 +2.4

Or see this region's nucleotide sequence