Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17910

Experiment: soil sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17905 and ABZR87_RS17910 overlap by 4 nucleotidesABZR87_RS17910 and ABZR87_RS17915 are separated by 71 nucleotides ABZR87_RS17905: ABZR87_RS17905 - ABC transporter substrate-binding protein, at 373,287 to 374,291 _RS17905 ABZR87_RS17910: ABZR87_RS17910 - IclR family transcriptional regulator, at 374,288 to 375,106 _RS17910 ABZR87_RS17915: ABZR87_RS17915 - CoA transferase, at 375,178 to 376,365 _RS17915 Position (kb) 374 375 376Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 373.398 kb on + strand, within ABZR87_RS17905at 373.398 kb on + strand, within ABZR87_RS17905at 373.398 kb on + strand, within ABZR87_RS17905at 373.399 kb on - strand, within ABZR87_RS17905at 373.399 kb on - strand, within ABZR87_RS17905at 373.399 kb on - strand, within ABZR87_RS17905at 373.415 kb on + strand, within ABZR87_RS17905at 373.416 kb on - strand, within ABZR87_RS17905at 373.539 kb on + strand, within ABZR87_RS17905at 373.539 kb on + strand, within ABZR87_RS17905at 373.539 kb on + strand, within ABZR87_RS17905at 373.539 kb on + strand, within ABZR87_RS17905at 373.539 kb on + strand, within ABZR87_RS17905at 373.540 kb on - strand, within ABZR87_RS17905at 373.540 kb on - strand, within ABZR87_RS17905at 373.605 kb on - strand, within ABZR87_RS17905at 373.605 kb on - strand, within ABZR87_RS17905at 373.725 kb on + strand, within ABZR87_RS17905at 373.725 kb on + strand, within ABZR87_RS17905at 373.725 kb on + strand, within ABZR87_RS17905at 373.726 kb on - strand, within ABZR87_RS17905at 373.726 kb on - strand, within ABZR87_RS17905at 373.726 kb on - strand, within ABZR87_RS17905at 373.726 kb on - strand, within ABZR87_RS17905at 373.764 kb on + strand, within ABZR87_RS17905at 373.764 kb on + strand, within ABZR87_RS17905at 373.764 kb on + strand, within ABZR87_RS17905at 373.764 kb on + strand, within ABZR87_RS17905at 373.765 kb on - strand, within ABZR87_RS17905at 373.765 kb on - strand, within ABZR87_RS17905at 373.953 kb on + strand, within ABZR87_RS17905at 373.954 kb on - strand, within ABZR87_RS17905at 373.954 kb on - strand, within ABZR87_RS17905at 373.954 kb on - strand, within ABZR87_RS17905at 373.954 kb on - strand, within ABZR87_RS17905at 373.954 kb on - strand, within ABZR87_RS17905at 373.954 kb on - strand, within ABZR87_RS17905at 374.247 kb on + strandat 374.247 kb on + strandat 374.247 kb on + strandat 374.253 kb on - strandat 374.607 kb on - strand, within ABZR87_RS17910at 374.607 kb on - strand, within ABZR87_RS17910at 374.690 kb on + strand, within ABZR87_RS17910at 374.690 kb on + strand, within ABZR87_RS17910at 374.690 kb on + strand, within ABZR87_RS17910at 374.690 kb on + strand, within ABZR87_RS17910at 374.690 kb on + strand, within ABZR87_RS17910at 374.691 kb on - strand, within ABZR87_RS17910at 374.691 kb on - strand, within ABZR87_RS17910at 374.691 kb on - strand, within ABZR87_RS17910at 374.691 kb on - strand, within ABZR87_RS17910at 374.691 kb on - strand, within ABZR87_RS17910at 374.691 kb on - strand, within ABZR87_RS17910at 374.691 kb on - strand, within ABZR87_RS17910at 374.692 kb on + strand, within ABZR87_RS17910at 374.693 kb on - strand, within ABZR87_RS17910at 374.693 kb on - strand, within ABZR87_RS17910at 374.843 kb on + strand, within ABZR87_RS17910at 374.843 kb on + strand, within ABZR87_RS17910at 374.843 kb on + strand, within ABZR87_RS17910at 374.843 kb on + strand, within ABZR87_RS17910at 374.843 kb on + strand, within ABZR87_RS17910at 374.844 kb on - strand, within ABZR87_RS17910at 374.844 kb on - strand, within ABZR87_RS17910at 374.844 kb on - strand, within ABZR87_RS17910at 374.844 kb on - strand, within ABZR87_RS17910at 374.867 kb on + strand, within ABZR87_RS17910at 374.870 kb on + strand, within ABZR87_RS17910at 374.870 kb on + strand, within ABZR87_RS17910at 374.870 kb on + strand, within ABZR87_RS17910at 374.871 kb on - strand, within ABZR87_RS17910at 374.871 kb on - strand, within ABZR87_RS17910at 374.871 kb on - strand, within ABZR87_RS17910at 374.871 kb on - strand, within ABZR87_RS17910at 374.871 kb on - strand, within ABZR87_RS17910at 375.104 kb on + strandat 375.105 kb on - strandat 375.105 kb on - strandat 375.161 kb on + strandat 375.161 kb on + strandat 375.247 kb on + strandat 375.248 kb on - strandat 375.248 kb on - strandat 375.475 kb on + strand, within ABZR87_RS17915at 375.476 kb on - strand, within ABZR87_RS17915at 375.476 kb on - strand, within ABZR87_RS17915at 375.512 kb on - strand, within ABZR87_RS17915at 375.512 kb on - strand, within ABZR87_RS17915at 375.602 kb on - strand, within ABZR87_RS17915at 375.602 kb on - strand, within ABZR87_RS17915at 375.602 kb on - strand, within ABZR87_RS17915at 375.602 kb on - strand, within ABZR87_RS17915at 375.753 kb on + strand, within ABZR87_RS17915at 375.754 kb on - strand, within ABZR87_RS17915at 375.754 kb on - strand, within ABZR87_RS17915at 375.829 kb on + strand, within ABZR87_RS17915at 375.829 kb on + strand, within ABZR87_RS17915at 375.830 kb on - strand, within ABZR87_RS17915

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 6; outgrowth in LB
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373,398 + ABZR87_RS17905 0.11 -0.0
373,398 + ABZR87_RS17905 0.11 +1.8
373,398 + ABZR87_RS17905 0.11 +0.4
373,399 - ABZR87_RS17905 0.11 +0.7
373,399 - ABZR87_RS17905 0.11 +0.4
373,399 - ABZR87_RS17905 0.11 -0.2
373,415 + ABZR87_RS17905 0.13 +0.2
373,416 - ABZR87_RS17905 0.13 +0.3
373,539 + ABZR87_RS17905 0.25 +0.5
373,539 + ABZR87_RS17905 0.25 +1.0
373,539 + ABZR87_RS17905 0.25 +0.2
373,539 + ABZR87_RS17905 0.25 -0.0
373,539 + ABZR87_RS17905 0.25 +0.1
373,540 - ABZR87_RS17905 0.25 -0.2
373,540 - ABZR87_RS17905 0.25 +0.2
373,605 - ABZR87_RS17905 0.32 +0.5
373,605 - ABZR87_RS17905 0.32 +0.3
373,725 + ABZR87_RS17905 0.44 +0.2
373,725 + ABZR87_RS17905 0.44 -0.6
373,725 + ABZR87_RS17905 0.44 +0.3
373,726 - ABZR87_RS17905 0.44 +0.7
373,726 - ABZR87_RS17905 0.44 -0.0
373,726 - ABZR87_RS17905 0.44 +0.1
373,726 - ABZR87_RS17905 0.44 +1.8
373,764 + ABZR87_RS17905 0.47 -0.0
373,764 + ABZR87_RS17905 0.47 +0.5
373,764 + ABZR87_RS17905 0.47 -0.4
373,764 + ABZR87_RS17905 0.47 -1.0
373,765 - ABZR87_RS17905 0.48 +0.2
373,765 - ABZR87_RS17905 0.48 +0.1
373,953 + ABZR87_RS17905 0.66 +0.4
373,954 - ABZR87_RS17905 0.66 +0.9
373,954 - ABZR87_RS17905 0.66 +0.3
373,954 - ABZR87_RS17905 0.66 -0.4
373,954 - ABZR87_RS17905 0.66 +0.3
373,954 - ABZR87_RS17905 0.66 +0.0
373,954 - ABZR87_RS17905 0.66 -0.5
374,247 + +0.0
374,247 + +0.6
374,247 + +0.4
374,253 - -0.1
374,607 - ABZR87_RS17910 0.39 -2.1
374,607 - ABZR87_RS17910 0.39 -1.7
374,690 + ABZR87_RS17910 0.49 -1.1
374,690 + ABZR87_RS17910 0.49 -1.0
374,690 + ABZR87_RS17910 0.49 -1.5
374,690 + ABZR87_RS17910 0.49 -0.8
374,690 + ABZR87_RS17910 0.49 -0.8
374,691 - ABZR87_RS17910 0.49 -0.7
374,691 - ABZR87_RS17910 0.49 -1.9
374,691 - ABZR87_RS17910 0.49 -1.5
374,691 - ABZR87_RS17910 0.49 -2.1
374,691 - ABZR87_RS17910 0.49 -0.9
374,691 - ABZR87_RS17910 0.49 -1.6
374,691 - ABZR87_RS17910 0.49 -0.8
374,692 + ABZR87_RS17910 0.49 -0.9
374,693 - ABZR87_RS17910 0.49 -1.4
374,693 - ABZR87_RS17910 0.49 -0.7
374,843 + ABZR87_RS17910 0.68 -1.8
374,843 + ABZR87_RS17910 0.68 -0.9
374,843 + ABZR87_RS17910 0.68 -1.1
374,843 + ABZR87_RS17910 0.68 -0.2
374,843 + ABZR87_RS17910 0.68 -1.1
374,844 - ABZR87_RS17910 0.68 -0.5
374,844 - ABZR87_RS17910 0.68 -0.9
374,844 - ABZR87_RS17910 0.68 -1.0
374,844 - ABZR87_RS17910 0.68 -0.5
374,867 + ABZR87_RS17910 0.71 -1.5
374,870 + ABZR87_RS17910 0.71 -1.9
374,870 + ABZR87_RS17910 0.71 +0.1
374,870 + ABZR87_RS17910 0.71 -1.3
374,871 - ABZR87_RS17910 0.71 +0.4
374,871 - ABZR87_RS17910 0.71 -2.2
374,871 - ABZR87_RS17910 0.71 -3.1
374,871 - ABZR87_RS17910 0.71 -0.8
374,871 - ABZR87_RS17910 0.71 -0.3
375,104 + +0.1
375,105 - -1.0
375,105 - -0.2
375,161 + -0.2
375,161 + -0.0
375,247 + +0.4
375,248 - -0.5
375,248 - -0.0
375,475 + ABZR87_RS17915 0.25 -0.1
375,476 - ABZR87_RS17915 0.25 -0.4
375,476 - ABZR87_RS17915 0.25 +0.8
375,512 - ABZR87_RS17915 0.28 -0.5
375,512 - ABZR87_RS17915 0.28 -0.5
375,602 - ABZR87_RS17915 0.36 +0.0
375,602 - ABZR87_RS17915 0.36 +0.1
375,602 - ABZR87_RS17915 0.36 +0.1
375,602 - ABZR87_RS17915 0.36 -0.6
375,753 + ABZR87_RS17915 0.48 -0.4
375,754 - ABZR87_RS17915 0.48 -0.5
375,754 - ABZR87_RS17915 0.48 +0.5
375,829 + ABZR87_RS17915 0.55 +0.2
375,829 + ABZR87_RS17915 0.55 -0.7
375,830 - ABZR87_RS17915 0.55 +0.5

Or see this region's nucleotide sequence