Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16890

Experiment: soil sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16885 and ABZR87_RS16890 are separated by 269 nucleotidesABZR87_RS16890 and ABZR87_RS16895 are separated by 90 nucleotides ABZR87_RS16885: ABZR87_RS16885 - hypothetical protein, at 143,062 to 143,607 _RS16885 ABZR87_RS16890: ABZR87_RS16890 - LamG-like jellyroll fold domain-containing protein, at 143,877 to 146,084 _RS16890 ABZR87_RS16895: ABZR87_RS16895 - FUSC family protein, at 146,175 to 147,251 _RS16895 Position (kb) 143 144 145 146 147Strain fitness (log2 ratio) -2 -1 0 1 2 3at 142.890 kb on + strandat 142.894 kb on + strandat 142.894 kb on + strandat 142.894 kb on + strandat 142.895 kb on - strandat 142.895 kb on - strandat 142.895 kb on - strandat 142.895 kb on - strandat 142.895 kb on - strandat 142.895 kb on - strandat 142.895 kb on - strandat 142.895 kb on - strandat 142.895 kb on - strandat 142.895 kb on - strandat 142.927 kb on + strandat 142.927 kb on + strandat 142.927 kb on + strandat 142.927 kb on + strandat 142.928 kb on - strandat 143.246 kb on + strand, within ABZR87_RS16885at 143.247 kb on - strand, within ABZR87_RS16885at 143.507 kb on - strand, within ABZR87_RS16885at 143.731 kb on + strandat 143.747 kb on + strandat 143.747 kb on + strandat 143.748 kb on - strandat 143.748 kb on - strandat 143.762 kb on + strandat 143.762 kb on + strandat 143.763 kb on - strandat 143.763 kb on - strandat 143.763 kb on - strandat 143.763 kb on - strandat 143.764 kb on + strandat 143.764 kb on + strandat 143.764 kb on + strandat 143.783 kb on + strandat 143.783 kb on + strandat 143.783 kb on + strandat 143.783 kb on + strandat 143.784 kb on - strandat 143.784 kb on - strandat 143.827 kb on + strandat 143.839 kb on + strandat 143.840 kb on - strandat 143.840 kb on - strandat 143.840 kb on - strandat 143.840 kb on - strandat 144.198 kb on + strand, within ABZR87_RS16890at 144.198 kb on + strand, within ABZR87_RS16890at 144.220 kb on - strand, within ABZR87_RS16890at 144.228 kb on + strand, within ABZR87_RS16890at 144.229 kb on - strand, within ABZR87_RS16890at 144.260 kb on - strand, within ABZR87_RS16890at 144.260 kb on - strand, within ABZR87_RS16890at 144.297 kb on + strand, within ABZR87_RS16890at 144.298 kb on - strand, within ABZR87_RS16890at 144.415 kb on + strand, within ABZR87_RS16890at 144.415 kb on + strand, within ABZR87_RS16890at 144.416 kb on - strand, within ABZR87_RS16890at 144.416 kb on - strand, within ABZR87_RS16890at 144.416 kb on - strand, within ABZR87_RS16890at 144.416 kb on - strand, within ABZR87_RS16890at 144.416 kb on - strand, within ABZR87_RS16890at 144.455 kb on + strand, within ABZR87_RS16890at 144.456 kb on - strand, within ABZR87_RS16890at 144.456 kb on - strand, within ABZR87_RS16890at 144.459 kb on + strand, within ABZR87_RS16890at 144.459 kb on + strand, within ABZR87_RS16890at 144.459 kb on + strand, within ABZR87_RS16890at 144.654 kb on + strand, within ABZR87_RS16890at 144.657 kb on + strand, within ABZR87_RS16890at 144.657 kb on + strand, within ABZR87_RS16890at 144.657 kb on + strand, within ABZR87_RS16890at 144.657 kb on + strand, within ABZR87_RS16890at 144.658 kb on - strand, within ABZR87_RS16890at 144.658 kb on - strand, within ABZR87_RS16890at 144.720 kb on + strand, within ABZR87_RS16890at 144.721 kb on - strand, within ABZR87_RS16890at 144.846 kb on + strand, within ABZR87_RS16890at 144.846 kb on + strand, within ABZR87_RS16890at 144.846 kb on + strand, within ABZR87_RS16890at 144.846 kb on + strand, within ABZR87_RS16890at 144.885 kb on + strand, within ABZR87_RS16890at 144.885 kb on + strand, within ABZR87_RS16890at 144.885 kb on + strand, within ABZR87_RS16890at 144.885 kb on + strand, within ABZR87_RS16890at 144.886 kb on - strand, within ABZR87_RS16890at 144.927 kb on + strand, within ABZR87_RS16890at 144.927 kb on + strand, within ABZR87_RS16890at 144.927 kb on + strand, within ABZR87_RS16890at 144.928 kb on - strand, within ABZR87_RS16890at 144.939 kb on + strand, within ABZR87_RS16890at 144.939 kb on + strand, within ABZR87_RS16890at 145.035 kb on + strand, within ABZR87_RS16890at 145.035 kb on + strand, within ABZR87_RS16890at 145.035 kb on + strand, within ABZR87_RS16890at 145.036 kb on - strand, within ABZR87_RS16890at 145.044 kb on + strand, within ABZR87_RS16890at 145.045 kb on - strand, within ABZR87_RS16890at 145.045 kb on - strand, within ABZR87_RS16890at 145.111 kb on - strand, within ABZR87_RS16890at 145.132 kb on - strand, within ABZR87_RS16890at 145.167 kb on + strand, within ABZR87_RS16890at 145.167 kb on + strand, within ABZR87_RS16890at 145.168 kb on - strand, within ABZR87_RS16890at 145.206 kb on + strand, within ABZR87_RS16890at 145.206 kb on + strand, within ABZR87_RS16890at 145.263 kb on + strand, within ABZR87_RS16890at 145.263 kb on + strand, within ABZR87_RS16890at 145.341 kb on + strand, within ABZR87_RS16890at 145.341 kb on + strand, within ABZR87_RS16890at 145.341 kb on + strand, within ABZR87_RS16890at 145.349 kb on + strand, within ABZR87_RS16890at 145.349 kb on + strand, within ABZR87_RS16890at 145.350 kb on - strand, within ABZR87_RS16890at 145.350 kb on - strand, within ABZR87_RS16890at 145.350 kb on - strand, within ABZR87_RS16890at 145.374 kb on + strand, within ABZR87_RS16890at 145.375 kb on - strand, within ABZR87_RS16890at 145.680 kb on + strand, within ABZR87_RS16890at 145.886 kb on + strandat 145.886 kb on + strandat 145.887 kb on - strandat 145.887 kb on - strandat 145.887 kb on - strandat 145.899 kb on + strandat 145.899 kb on + strandat 145.900 kb on - strandat 145.900 kb on - strandat 145.900 kb on - strandat 145.900 kb on - strandat 146.484 kb on - strand, within ABZR87_RS16895at 146.579 kb on + strand, within ABZR87_RS16895at 146.579 kb on + strand, within ABZR87_RS16895at 146.580 kb on - strand, within ABZR87_RS16895at 146.644 kb on + strand, within ABZR87_RS16895at 146.644 kb on + strand, within ABZR87_RS16895at 146.696 kb on - strand, within ABZR87_RS16895at 146.704 kb on + strand, within ABZR87_RS16895at 146.704 kb on + strand, within ABZR87_RS16895at 146.704 kb on + strand, within ABZR87_RS16895at 146.704 kb on + strand, within ABZR87_RS16895at 146.705 kb on - strand, within ABZR87_RS16895at 146.705 kb on - strand, within ABZR87_RS16895at 146.705 kb on - strand, within ABZR87_RS16895at 146.705 kb on - strand, within ABZR87_RS16895at 146.843 kb on + strand, within ABZR87_RS16895at 146.845 kb on + strand, within ABZR87_RS16895at 146.845 kb on + strand, within ABZR87_RS16895at 146.845 kb on + strand, within ABZR87_RS16895at 146.845 kb on + strand, within ABZR87_RS16895at 146.845 kb on + strand, within ABZR87_RS16895at 146.846 kb on - strand, within ABZR87_RS16895at 146.846 kb on - strand, within ABZR87_RS16895at 146.846 kb on - strand, within ABZR87_RS16895at 146.869 kb on + strand, within ABZR87_RS16895at 146.891 kb on + strand, within ABZR87_RS16895at 146.892 kb on - strand, within ABZR87_RS16895at 146.892 kb on - strand, within ABZR87_RS16895at 146.892 kb on - strand, within ABZR87_RS16895at 146.892 kb on - strand, within ABZR87_RS16895at 146.905 kb on + strand, within ABZR87_RS16895at 146.905 kb on + strand, within ABZR87_RS16895at 146.906 kb on - strand, within ABZR87_RS16895at 146.906 kb on - strand, within ABZR87_RS16895at 146.906 kb on - strand, within ABZR87_RS16895

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 6; outgrowth in LB
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142,890 + -0.1
142,894 + -0.8
142,894 + +0.2
142,894 + -0.4
142,895 - +0.4
142,895 - +0.1
142,895 - -0.7
142,895 - -0.2
142,895 - +0.3
142,895 - +0.7
142,895 - +0.7
142,895 - +0.0
142,895 - -2.4
142,895 - +0.8
142,927 + +1.2
142,927 + -1.6
142,927 + +0.6
142,927 + +0.7
142,928 - +0.2
143,246 + ABZR87_RS16885 0.34 -1.0
143,247 - ABZR87_RS16885 0.34 -0.9
143,507 - ABZR87_RS16885 0.82 -0.1
143,731 + -0.1
143,747 + +0.2
143,747 + +0.8
143,748 - +0.9
143,748 - -1.6
143,762 + +0.6
143,762 + -0.7
143,763 - +0.2
143,763 - +0.4
143,763 - -0.2
143,763 - +0.4
143,764 + +0.6
143,764 + +0.7
143,764 + -0.3
143,783 + +0.7
143,783 + -1.6
143,783 + -0.1
143,783 + +0.8
143,784 - +0.0
143,784 - +0.3
143,827 + +0.0
143,839 + +0.7
143,840 - +1.4
143,840 - +0.5
143,840 - -0.3
143,840 - +0.2
144,198 + ABZR87_RS16890 0.15 -0.1
144,198 + ABZR87_RS16890 0.15 -0.5
144,220 - ABZR87_RS16890 0.16 +0.5
144,228 + ABZR87_RS16890 0.16 -1.3
144,229 - ABZR87_RS16890 0.16 +0.3
144,260 - ABZR87_RS16890 0.17 +0.1
144,260 - ABZR87_RS16890 0.17 +0.3
144,297 + ABZR87_RS16890 0.19 +0.6
144,298 - ABZR87_RS16890 0.19 -0.0
144,415 + ABZR87_RS16890 0.24 -1.1
144,415 + ABZR87_RS16890 0.24 -0.1
144,416 - ABZR87_RS16890 0.24 +0.2
144,416 - ABZR87_RS16890 0.24 -0.5
144,416 - ABZR87_RS16890 0.24 -0.8
144,416 - ABZR87_RS16890 0.24 +1.4
144,416 - ABZR87_RS16890 0.24 +0.8
144,455 + ABZR87_RS16890 0.26 -0.2
144,456 - ABZR87_RS16890 0.26 +0.1
144,456 - ABZR87_RS16890 0.26 +0.0
144,459 + ABZR87_RS16890 0.26 +0.0
144,459 + ABZR87_RS16890 0.26 -0.1
144,459 + ABZR87_RS16890 0.26 -1.2
144,654 + ABZR87_RS16890 0.35 +0.6
144,657 + ABZR87_RS16890 0.35 -0.2
144,657 + ABZR87_RS16890 0.35 +0.6
144,657 + ABZR87_RS16890 0.35 +0.2
144,657 + ABZR87_RS16890 0.35 +0.2
144,658 - ABZR87_RS16890 0.35 +0.3
144,658 - ABZR87_RS16890 0.35 +0.2
144,720 + ABZR87_RS16890 0.38 +1.0
144,721 - ABZR87_RS16890 0.38 +0.8
144,846 + ABZR87_RS16890 0.44 -0.5
144,846 + ABZR87_RS16890 0.44 -0.5
144,846 + ABZR87_RS16890 0.44 +0.4
144,846 + ABZR87_RS16890 0.44 -0.4
144,885 + ABZR87_RS16890 0.46 -0.2
144,885 + ABZR87_RS16890 0.46 +0.3
144,885 + ABZR87_RS16890 0.46 +0.9
144,885 + ABZR87_RS16890 0.46 +0.2
144,886 - ABZR87_RS16890 0.46 -0.1
144,927 + ABZR87_RS16890 0.48 -0.3
144,927 + ABZR87_RS16890 0.48 +0.6
144,927 + ABZR87_RS16890 0.48 +0.3
144,928 - ABZR87_RS16890 0.48 +0.0
144,939 + ABZR87_RS16890 0.48 +3.4
144,939 + ABZR87_RS16890 0.48 +0.5
145,035 + ABZR87_RS16890 0.52 -0.5
145,035 + ABZR87_RS16890 0.52 -1.7
145,035 + ABZR87_RS16890 0.52 +0.3
145,036 - ABZR87_RS16890 0.52 -0.5
145,044 + ABZR87_RS16890 0.53 -0.2
145,045 - ABZR87_RS16890 0.53 -0.4
145,045 - ABZR87_RS16890 0.53 -0.3
145,111 - ABZR87_RS16890 0.56 -0.6
145,132 - ABZR87_RS16890 0.57 -0.3
145,167 + ABZR87_RS16890 0.58 +0.5
145,167 + ABZR87_RS16890 0.58 +0.2
145,168 - ABZR87_RS16890 0.58 +0.9
145,206 + ABZR87_RS16890 0.60 -1.0
145,206 + ABZR87_RS16890 0.60 +2.8
145,263 + ABZR87_RS16890 0.63 -0.1
145,263 + ABZR87_RS16890 0.63 -1.9
145,341 + ABZR87_RS16890 0.66 +0.5
145,341 + ABZR87_RS16890 0.66 +0.7
145,341 + ABZR87_RS16890 0.66 -0.0
145,349 + ABZR87_RS16890 0.67 -0.4
145,349 + ABZR87_RS16890 0.67 +0.1
145,350 - ABZR87_RS16890 0.67 -0.9
145,350 - ABZR87_RS16890 0.67 -0.0
145,350 - ABZR87_RS16890 0.67 +0.4
145,374 + ABZR87_RS16890 0.68 -0.6
145,375 - ABZR87_RS16890 0.68 +0.3
145,680 + ABZR87_RS16890 0.82 -1.4
145,886 + +0.9
145,886 + -0.1
145,887 - +0.6
145,887 - -0.2
145,887 - +0.4
145,899 + +0.7
145,899 + -0.4
145,900 - +0.1
145,900 - +0.4
145,900 - +0.5
145,900 - -1.2
146,484 - ABZR87_RS16895 0.29 -0.3
146,579 + ABZR87_RS16895 0.38 +0.2
146,579 + ABZR87_RS16895 0.38 -0.3
146,580 - ABZR87_RS16895 0.38 +0.7
146,644 + ABZR87_RS16895 0.44 +0.2
146,644 + ABZR87_RS16895 0.44 +0.0
146,696 - ABZR87_RS16895 0.48 +1.0
146,704 + ABZR87_RS16895 0.49 +0.4
146,704 + ABZR87_RS16895 0.49 -0.3
146,704 + ABZR87_RS16895 0.49 +1.1
146,704 + ABZR87_RS16895 0.49 +0.1
146,705 - ABZR87_RS16895 0.49 +1.2
146,705 - ABZR87_RS16895 0.49 +0.1
146,705 - ABZR87_RS16895 0.49 -0.6
146,705 - ABZR87_RS16895 0.49 +0.1
146,843 + ABZR87_RS16895 0.62 -0.3
146,845 + ABZR87_RS16895 0.62 +0.5
146,845 + ABZR87_RS16895 0.62 +0.2
146,845 + ABZR87_RS16895 0.62 +1.0
146,845 + ABZR87_RS16895 0.62 -0.7
146,845 + ABZR87_RS16895 0.62 +0.6
146,846 - ABZR87_RS16895 0.62 -0.8
146,846 - ABZR87_RS16895 0.62 -0.2
146,846 - ABZR87_RS16895 0.62 +1.1
146,869 + ABZR87_RS16895 0.64 -0.0
146,891 + ABZR87_RS16895 0.66 +0.6
146,892 - ABZR87_RS16895 0.67 +0.9
146,892 - ABZR87_RS16895 0.67 +0.1
146,892 - ABZR87_RS16895 0.67 -0.0
146,892 - ABZR87_RS16895 0.67 -0.1
146,905 + ABZR87_RS16895 0.68 +1.1
146,905 + ABZR87_RS16895 0.68 +0.4
146,906 - ABZR87_RS16895 0.68 +1.1
146,906 - ABZR87_RS16895 0.68 +0.3
146,906 - ABZR87_RS16895 0.68 -0.1

Or see this region's nucleotide sequence