Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04545

Experiment: soil sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04535 and ABZR87_RS04540 are separated by 242 nucleotidesABZR87_RS04540 and ABZR87_RS04545 are separated by 9 nucleotidesABZR87_RS04545 and ABZR87_RS04550 are separated by 122 nucleotides ABZR87_RS04535: ABZR87_RS04535 - EAL domain-containing protein, at 949,233 to 950,447 _RS04535 ABZR87_RS04540: ABZR87_RS04540 - response regulator transcription factor, at 950,690 to 951,337 _RS04540 ABZR87_RS04545: ABZR87_RS04545 - aquaporin, at 951,347 to 952,126 _RS04545 ABZR87_RS04550: ABZR87_RS04550 - MFS transporter, at 952,249 to 953,715 _RS04550 Position (kb) 951 952 953Strain fitness (log2 ratio) -2 -1 0 1 2at 950.385 kb on + strandat 950.386 kb on - strandat 950.490 kb on - strandat 950.515 kb on + strandat 950.515 kb on + strandat 950.516 kb on - strandat 950.516 kb on - strandat 950.516 kb on - strandat 950.516 kb on - strandat 950.516 kb on - strandat 950.516 kb on - strandat 950.530 kb on + strandat 950.531 kb on - strandat 950.556 kb on + strandat 950.556 kb on + strandat 950.557 kb on - strandat 950.557 kb on - strandat 950.557 kb on - strandat 950.557 kb on - strandat 950.567 kb on + strandat 950.567 kb on + strandat 950.567 kb on + strandat 950.567 kb on + strandat 950.568 kb on - strandat 950.568 kb on - strandat 950.722 kb on + strandat 950.861 kb on + strand, within ABZR87_RS04540at 950.861 kb on + strand, within ABZR87_RS04540at 950.861 kb on + strand, within ABZR87_RS04540at 950.861 kb on + strand, within ABZR87_RS04540at 950.861 kb on + strand, within ABZR87_RS04540at 950.862 kb on - strand, within ABZR87_RS04540at 950.862 kb on - strand, within ABZR87_RS04540at 950.862 kb on - strand, within ABZR87_RS04540at 951.077 kb on + strand, within ABZR87_RS04540at 951.078 kb on - strand, within ABZR87_RS04540at 951.176 kb on + strand, within ABZR87_RS04540at 951.176 kb on + strand, within ABZR87_RS04540at 951.176 kb on + strand, within ABZR87_RS04540at 951.176 kb on + strand, within ABZR87_RS04540at 951.176 kb on + strand, within ABZR87_RS04540at 951.176 kb on + strand, within ABZR87_RS04540at 951.176 kb on + strand, within ABZR87_RS04540at 951.176 kb on + strand, within ABZR87_RS04540at 951.177 kb on - strand, within ABZR87_RS04540at 951.177 kb on - strand, within ABZR87_RS04540at 951.177 kb on - strand, within ABZR87_RS04540at 951.177 kb on - strand, within ABZR87_RS04540at 951.177 kb on - strand, within ABZR87_RS04540at 951.302 kb on + strandat 951.302 kb on + strandat 951.303 kb on - strandat 951.303 kb on - strandat 951.335 kb on + strandat 951.489 kb on + strand, within ABZR87_RS04545at 951.489 kb on + strand, within ABZR87_RS04545at 951.489 kb on + strand, within ABZR87_RS04545at 951.490 kb on - strand, within ABZR87_RS04545at 951.490 kb on - strand, within ABZR87_RS04545at 951.490 kb on - strand, within ABZR87_RS04545at 951.490 kb on - strand, within ABZR87_RS04545at 951.490 kb on - strand, within ABZR87_RS04545at 951.604 kb on + strand, within ABZR87_RS04545at 951.605 kb on - strand, within ABZR87_RS04545at 951.606 kb on + strand, within ABZR87_RS04545at 951.606 kb on + strand, within ABZR87_RS04545at 951.606 kb on + strand, within ABZR87_RS04545at 951.606 kb on + strand, within ABZR87_RS04545at 951.606 kb on + strand, within ABZR87_RS04545at 951.606 kb on + strand, within ABZR87_RS04545at 951.607 kb on - strand, within ABZR87_RS04545at 951.814 kb on - strand, within ABZR87_RS04545at 951.814 kb on - strand, within ABZR87_RS04545at 951.814 kb on - strand, within ABZR87_RS04545at 951.953 kb on + strand, within ABZR87_RS04545at 952.246 kb on - strandat 952.246 kb on - strandat 952.246 kb on - strandat 952.412 kb on + strand, within ABZR87_RS04550at 952.413 kb on - strand, within ABZR87_RS04550at 952.413 kb on - strand, within ABZR87_RS04550at 952.413 kb on - strand, within ABZR87_RS04550at 952.413 kb on - strand, within ABZR87_RS04550at 952.413 kb on - strand, within ABZR87_RS04550at 952.464 kb on + strand, within ABZR87_RS04550at 952.464 kb on + strand, within ABZR87_RS04550at 952.497 kb on + strand, within ABZR87_RS04550at 952.498 kb on - strand, within ABZR87_RS04550at 952.498 kb on - strand, within ABZR87_RS04550at 952.498 kb on - strand, within ABZR87_RS04550at 952.498 kb on - strand, within ABZR87_RS04550at 952.562 kb on + strand, within ABZR87_RS04550at 952.678 kb on + strand, within ABZR87_RS04550at 952.808 kb on + strand, within ABZR87_RS04550at 952.808 kb on + strand, within ABZR87_RS04550at 952.808 kb on + strand, within ABZR87_RS04550at 952.808 kb on + strand, within ABZR87_RS04550at 952.809 kb on - strand, within ABZR87_RS04550at 952.809 kb on - strand, within ABZR87_RS04550at 952.847 kb on + strand, within ABZR87_RS04550at 952.847 kb on + strand, within ABZR87_RS04550at 952.847 kb on + strand, within ABZR87_RS04550at 952.848 kb on - strand, within ABZR87_RS04550at 952.848 kb on - strand, within ABZR87_RS04550at 952.848 kb on - strand, within ABZR87_RS04550at 953.093 kb on - strand, within ABZR87_RS04550

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 6; outgrowth in LB
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950,385 + -0.5
950,386 - -0.1
950,490 - +0.0
950,515 + -0.5
950,515 + -1.6
950,516 - +0.3
950,516 - +1.3
950,516 - +1.0
950,516 - -0.5
950,516 - +0.7
950,516 - +0.9
950,530 + -0.1
950,531 - -0.2
950,556 + -0.5
950,556 + -1.0
950,557 - +0.8
950,557 - +0.4
950,557 - -0.4
950,557 - -1.5
950,567 + +2.1
950,567 + -0.5
950,567 + +0.5
950,567 + +0.1
950,568 - -0.6
950,568 - -0.2
950,722 + -0.4
950,861 + ABZR87_RS04540 0.26 -0.6
950,861 + ABZR87_RS04540 0.26 -0.8
950,861 + ABZR87_RS04540 0.26 +0.2
950,861 + ABZR87_RS04540 0.26 -0.2
950,861 + ABZR87_RS04540 0.26 +0.2
950,862 - ABZR87_RS04540 0.27 -0.2
950,862 - ABZR87_RS04540 0.27 -0.2
950,862 - ABZR87_RS04540 0.27 +0.2
951,077 + ABZR87_RS04540 0.60 -0.5
951,078 - ABZR87_RS04540 0.60 +0.1
951,176 + ABZR87_RS04540 0.75 +0.1
951,176 + ABZR87_RS04540 0.75 +0.6
951,176 + ABZR87_RS04540 0.75 +0.4
951,176 + ABZR87_RS04540 0.75 +0.9
951,176 + ABZR87_RS04540 0.75 +0.0
951,176 + ABZR87_RS04540 0.75 -1.6
951,176 + ABZR87_RS04540 0.75 +0.3
951,176 + ABZR87_RS04540 0.75 -0.2
951,177 - ABZR87_RS04540 0.75 +0.4
951,177 - ABZR87_RS04540 0.75 -0.2
951,177 - ABZR87_RS04540 0.75 +0.3
951,177 - ABZR87_RS04540 0.75 -0.1
951,177 - ABZR87_RS04540 0.75 -1.1
951,302 + -0.2
951,302 + +0.9
951,303 - +0.3
951,303 - -0.8
951,335 + +1.8
951,489 + ABZR87_RS04545 0.18 -0.8
951,489 + ABZR87_RS04545 0.18 -1.5
951,489 + ABZR87_RS04545 0.18 +0.4
951,490 - ABZR87_RS04545 0.18 -1.5
951,490 - ABZR87_RS04545 0.18 +0.5
951,490 - ABZR87_RS04545 0.18 +0.2
951,490 - ABZR87_RS04545 0.18 -0.3
951,490 - ABZR87_RS04545 0.18 -2.7
951,604 + ABZR87_RS04545 0.33 -0.7
951,605 - ABZR87_RS04545 0.33 -0.4
951,606 + ABZR87_RS04545 0.33 -0.4
951,606 + ABZR87_RS04545 0.33 -0.7
951,606 + ABZR87_RS04545 0.33 -0.2
951,606 + ABZR87_RS04545 0.33 +0.1
951,606 + ABZR87_RS04545 0.33 -0.2
951,606 + ABZR87_RS04545 0.33 -0.4
951,607 - ABZR87_RS04545 0.33 -1.1
951,814 - ABZR87_RS04545 0.60 +0.5
951,814 - ABZR87_RS04545 0.60 +0.5
951,814 - ABZR87_RS04545 0.60 +0.0
951,953 + ABZR87_RS04545 0.78 -0.2
952,246 - +0.3
952,246 - +0.0
952,246 - +0.2
952,412 + ABZR87_RS04550 0.11 -1.8
952,413 - ABZR87_RS04550 0.11 +0.5
952,413 - ABZR87_RS04550 0.11 -0.7
952,413 - ABZR87_RS04550 0.11 -0.4
952,413 - ABZR87_RS04550 0.11 -0.7
952,413 - ABZR87_RS04550 0.11 -0.4
952,464 + ABZR87_RS04550 0.15 -0.5
952,464 + ABZR87_RS04550 0.15 +0.9
952,497 + ABZR87_RS04550 0.17 -1.1
952,498 - ABZR87_RS04550 0.17 -1.3
952,498 - ABZR87_RS04550 0.17 -0.8
952,498 - ABZR87_RS04550 0.17 -0.5
952,498 - ABZR87_RS04550 0.17 +0.7
952,562 + ABZR87_RS04550 0.21 +0.0
952,678 + ABZR87_RS04550 0.29 -1.3
952,808 + ABZR87_RS04550 0.38 -0.1
952,808 + ABZR87_RS04550 0.38 -0.1
952,808 + ABZR87_RS04550 0.38 +0.0
952,808 + ABZR87_RS04550 0.38 +1.0
952,809 - ABZR87_RS04550 0.38 +1.1
952,809 - ABZR87_RS04550 0.38 -0.0
952,847 + ABZR87_RS04550 0.41 -1.7
952,847 + ABZR87_RS04550 0.41 +0.3
952,847 + ABZR87_RS04550 0.41 +0.8
952,848 - ABZR87_RS04550 0.41 -0.3
952,848 - ABZR87_RS04550 0.41 +0.9
952,848 - ABZR87_RS04550 0.41 -0.4
953,093 - ABZR87_RS04550 0.58 -0.3

Or see this region's nucleotide sequence