Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03470

Experiment: soil sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03465 and ABZR87_RS03470 are separated by 100 nucleotidesABZR87_RS03470 and ABZR87_RS03475 are separated by 3 nucleotidesABZR87_RS03475 and ABZR87_RS03480 overlap by 4 nucleotides ABZR87_RS03465: ABZR87_RS03465 - pyridoxamine 5'-phosphate oxidase family protein, at 724,848 to 725,531 _RS03465 ABZR87_RS03470: ABZR87_RS03470 - PLP-dependent aminotransferase family protein, at 725,632 to 727,101 _RS03470 ABZR87_RS03475: ABZR87_RS03475 - N-acetyltransferase, at 727,105 to 727,767 _RS03475 ABZR87_RS03480: ABZR87_RS03480 - hypothetical protein, at 727,764 to 728,627 _RS03480 Position (kb) 725 726 727 728Strain fitness (log2 ratio) -2 -1 0 1at 724.906 kb on + strandat 724.906 kb on + strandat 724.906 kb on + strandat 724.906 kb on + strandat 724.907 kb on - strandat 724.907 kb on - strandat 724.907 kb on - strandat 724.907 kb on - strandat 725.141 kb on + strand, within ABZR87_RS03465at 725.142 kb on - strand, within ABZR87_RS03465at 725.142 kb on - strand, within ABZR87_RS03465at 725.142 kb on - strand, within ABZR87_RS03465at 725.147 kb on + strand, within ABZR87_RS03465at 725.148 kb on - strand, within ABZR87_RS03465at 725.197 kb on + strand, within ABZR87_RS03465at 725.197 kb on + strand, within ABZR87_RS03465at 725.215 kb on + strand, within ABZR87_RS03465at 725.215 kb on + strand, within ABZR87_RS03465at 725.215 kb on + strand, within ABZR87_RS03465at 725.216 kb on - strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.342 kb on - strand, within ABZR87_RS03465at 725.342 kb on - strand, within ABZR87_RS03465at 725.342 kb on - strand, within ABZR87_RS03465at 725.342 kb on - strand, within ABZR87_RS03465at 725.342 kb on - strand, within ABZR87_RS03465at 725.342 kb on - strand, within ABZR87_RS03465at 725.342 kb on - strand, within ABZR87_RS03465at 725.342 kb on - strand, within ABZR87_RS03465at 725.422 kb on + strand, within ABZR87_RS03465at 725.422 kb on + strand, within ABZR87_RS03465at 725.422 kb on + strand, within ABZR87_RS03465at 725.422 kb on + strand, within ABZR87_RS03465at 725.422 kb on + strand, within ABZR87_RS03465at 725.422 kb on + strand, within ABZR87_RS03465at 725.422 kb on + strand, within ABZR87_RS03465at 725.422 kb on + strand, within ABZR87_RS03465at 725.422 kb on + strand, within ABZR87_RS03465at 725.423 kb on - strand, within ABZR87_RS03465at 725.423 kb on - strand, within ABZR87_RS03465at 725.423 kb on - strand, within ABZR87_RS03465at 725.423 kb on - strand, within ABZR87_RS03465at 725.423 kb on - strand, within ABZR87_RS03465at 725.461 kb on + strand, within ABZR87_RS03465at 725.461 kb on + strand, within ABZR87_RS03465at 725.461 kb on + strand, within ABZR87_RS03465at 725.462 kb on - strand, within ABZR87_RS03465at 725.462 kb on - strand, within ABZR87_RS03465at 725.564 kb on + strandat 725.598 kb on + strandat 725.598 kb on + strandat 725.598 kb on + strandat 725.598 kb on + strandat 725.599 kb on - strandat 725.599 kb on - strandat 725.599 kb on - strandat 725.599 kb on - strandat 725.599 kb on - strandat 725.638 kb on + strandat 725.638 kb on + strandat 725.638 kb on + strandat 725.638 kb on + strandat 725.639 kb on - strandat 725.639 kb on - strandat 725.639 kb on - strandat 725.659 kb on + strandat 725.659 kb on + strandat 725.659 kb on + strandat 725.660 kb on - strandat 725.660 kb on - strandat 725.719 kb on + strandat 725.719 kb on + strandat 725.720 kb on - strandat 725.720 kb on - strandat 725.720 kb on - strandat 725.720 kb on - strandat 725.720 kb on - strandat 725.720 kb on - strandat 725.830 kb on + strand, within ABZR87_RS03470at 725.831 kb on - strand, within ABZR87_RS03470at 725.831 kb on - strand, within ABZR87_RS03470at 725.836 kb on + strand, within ABZR87_RS03470at 725.837 kb on - strand, within ABZR87_RS03470at 726.154 kb on + strand, within ABZR87_RS03470at 726.154 kb on + strand, within ABZR87_RS03470at 726.155 kb on - strand, within ABZR87_RS03470at 726.155 kb on - strand, within ABZR87_RS03470at 726.155 kb on - strand, within ABZR87_RS03470at 726.292 kb on + strand, within ABZR87_RS03470at 726.292 kb on + strand, within ABZR87_RS03470at 726.293 kb on - strand, within ABZR87_RS03470at 726.293 kb on - strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.431 kb on - strand, within ABZR87_RS03470at 726.431 kb on - strand, within ABZR87_RS03470at 726.520 kb on + strand, within ABZR87_RS03470at 726.520 kb on + strand, within ABZR87_RS03470at 726.520 kb on + strand, within ABZR87_RS03470at 726.521 kb on - strand, within ABZR87_RS03470at 726.595 kb on + strand, within ABZR87_RS03470at 726.595 kb on + strand, within ABZR87_RS03470at 726.596 kb on - strand, within ABZR87_RS03470at 726.596 kb on - strand, within ABZR87_RS03470at 726.596 kb on - strand, within ABZR87_RS03470at 726.596 kb on - strand, within ABZR87_RS03470at 726.596 kb on - strand, within ABZR87_RS03470at 726.596 kb on - strand, within ABZR87_RS03470at 726.643 kb on + strand, within ABZR87_RS03470at 726.643 kb on + strand, within ABZR87_RS03470at 726.793 kb on + strand, within ABZR87_RS03470at 726.793 kb on + strand, within ABZR87_RS03470at 726.793 kb on + strand, within ABZR87_RS03470at 726.793 kb on + strand, within ABZR87_RS03470at 726.794 kb on - strand, within ABZR87_RS03470at 726.794 kb on - strand, within ABZR87_RS03470at 727.003 kb on + strandat 727.003 kb on + strandat 727.003 kb on + strandat 727.003 kb on + strandat 727.003 kb on + strandat 727.003 kb on + strandat 727.003 kb on + strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.025 kb on - strandat 727.221 kb on - strand, within ABZR87_RS03475at 727.250 kb on + strand, within ABZR87_RS03475at 727.250 kb on + strand, within ABZR87_RS03475at 727.251 kb on - strand, within ABZR87_RS03475at 727.262 kb on + strand, within ABZR87_RS03475at 727.263 kb on - strand, within ABZR87_RS03475at 727.263 kb on - strand, within ABZR87_RS03475at 727.397 kb on + strand, within ABZR87_RS03475at 727.398 kb on - strand, within ABZR87_RS03475at 727.505 kb on + strand, within ABZR87_RS03475at 727.505 kb on + strand, within ABZR87_RS03475at 727.505 kb on + strand, within ABZR87_RS03475at 727.506 kb on - strand, within ABZR87_RS03475at 727.506 kb on - strand, within ABZR87_RS03475at 727.511 kb on + strand, within ABZR87_RS03475at 727.511 kb on + strand, within ABZR87_RS03475at 727.512 kb on - strand, within ABZR87_RS03475at 727.512 kb on - strand, within ABZR87_RS03475at 727.512 kb on - strand, within ABZR87_RS03475at 727.512 kb on - strand, within ABZR87_RS03475at 727.512 kb on - strand, within ABZR87_RS03475at 727.616 kb on + strand, within ABZR87_RS03475at 727.616 kb on + strand, within ABZR87_RS03475at 727.616 kb on + strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.867 kb on + strand, within ABZR87_RS03480at 727.867 kb on + strand, within ABZR87_RS03480at 727.868 kb on - strand, within ABZR87_RS03480at 727.876 kb on + strand, within ABZR87_RS03480

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 6; outgrowth in LB
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724,906 + +0.2
724,906 + +0.4
724,906 + -0.3
724,906 + +0.3
724,907 - +0.0
724,907 - +0.1
724,907 - +0.8
724,907 - -0.8
725,141 + ABZR87_RS03465 0.43 -0.1
725,142 - ABZR87_RS03465 0.43 -0.6
725,142 - ABZR87_RS03465 0.43 -0.1
725,142 - ABZR87_RS03465 0.43 -0.1
725,147 + ABZR87_RS03465 0.44 +0.1
725,148 - ABZR87_RS03465 0.44 -0.3
725,197 + ABZR87_RS03465 0.51 +0.9
725,197 + ABZR87_RS03465 0.51 +1.5
725,215 + ABZR87_RS03465 0.54 -0.8
725,215 + ABZR87_RS03465 0.54 +0.6
725,215 + ABZR87_RS03465 0.54 -0.5
725,216 - ABZR87_RS03465 0.54 +1.4
725,341 + ABZR87_RS03465 0.72 -0.6
725,341 + ABZR87_RS03465 0.72 +0.1
725,341 + ABZR87_RS03465 0.72 +0.6
725,341 + ABZR87_RS03465 0.72 -0.2
725,341 + ABZR87_RS03465 0.72 -0.2
725,341 + ABZR87_RS03465 0.72 +0.2
725,341 + ABZR87_RS03465 0.72 -0.0
725,341 + ABZR87_RS03465 0.72 -0.7
725,341 + ABZR87_RS03465 0.72 +0.2
725,341 + ABZR87_RS03465 0.72 +0.1
725,341 + ABZR87_RS03465 0.72 +0.4
725,341 + ABZR87_RS03465 0.72 +0.7
725,341 + ABZR87_RS03465 0.72 +1.5
725,342 - ABZR87_RS03465 0.72 +0.0
725,342 - ABZR87_RS03465 0.72 +0.7
725,342 - ABZR87_RS03465 0.72 -1.1
725,342 - ABZR87_RS03465 0.72 +0.1
725,342 - ABZR87_RS03465 0.72 -0.2
725,342 - ABZR87_RS03465 0.72 +0.6
725,342 - ABZR87_RS03465 0.72 -0.4
725,342 - ABZR87_RS03465 0.72 +0.3
725,422 + ABZR87_RS03465 0.84 +0.2
725,422 + ABZR87_RS03465 0.84 +0.4
725,422 + ABZR87_RS03465 0.84 +1.0
725,422 + ABZR87_RS03465 0.84 -0.2
725,422 + ABZR87_RS03465 0.84 +0.3
725,422 + ABZR87_RS03465 0.84 +0.0
725,422 + ABZR87_RS03465 0.84 -0.8
725,422 + ABZR87_RS03465 0.84 -1.2
725,422 + ABZR87_RS03465 0.84 +0.6
725,423 - ABZR87_RS03465 0.84 +0.4
725,423 - ABZR87_RS03465 0.84 -0.4
725,423 - ABZR87_RS03465 0.84 -0.1
725,423 - ABZR87_RS03465 0.84 -0.3
725,423 - ABZR87_RS03465 0.84 +0.4
725,461 + ABZR87_RS03465 0.90 -0.1
725,461 + ABZR87_RS03465 0.90 +0.2
725,461 + ABZR87_RS03465 0.90 -0.6
725,462 - ABZR87_RS03465 0.90 -0.4
725,462 - ABZR87_RS03465 0.90 +0.3
725,564 + +0.1
725,598 + -0.0
725,598 + -0.2
725,598 + +0.1
725,598 + -0.6
725,599 - +0.2
725,599 - -1.2
725,599 - +0.8
725,599 - -1.0
725,599 - +1.5
725,638 + -0.4
725,638 + +0.1
725,638 + +0.3
725,638 + -0.8
725,639 - -0.3
725,639 - -0.4
725,639 - -0.2
725,659 + -0.9
725,659 + +0.2
725,659 + -0.3
725,660 - -0.4
725,660 - -0.0
725,719 + +0.7
725,719 + +1.4
725,720 - -0.7
725,720 - +0.3
725,720 - -0.8
725,720 - -0.7
725,720 - -0.0
725,720 - -0.0
725,830 + ABZR87_RS03470 0.13 +0.1
725,831 - ABZR87_RS03470 0.14 -0.2
725,831 - ABZR87_RS03470 0.14 +0.6
725,836 + ABZR87_RS03470 0.14 +0.2
725,837 - ABZR87_RS03470 0.14 +0.3
726,154 + ABZR87_RS03470 0.36 -0.3
726,154 + ABZR87_RS03470 0.36 +0.2
726,155 - ABZR87_RS03470 0.36 +0.2
726,155 - ABZR87_RS03470 0.36 -0.3
726,155 - ABZR87_RS03470 0.36 -0.4
726,292 + ABZR87_RS03470 0.45 +0.4
726,292 + ABZR87_RS03470 0.45 -1.3
726,293 - ABZR87_RS03470 0.45 -0.4
726,293 - ABZR87_RS03470 0.45 +1.1
726,409 + ABZR87_RS03470 0.53 +0.9
726,409 + ABZR87_RS03470 0.53 +0.1
726,409 + ABZR87_RS03470 0.53 +0.8
726,409 + ABZR87_RS03470 0.53 +0.7
726,409 + ABZR87_RS03470 0.53 -0.1
726,409 + ABZR87_RS03470 0.53 +0.1
726,409 + ABZR87_RS03470 0.53 -0.9
726,409 + ABZR87_RS03470 0.53 +0.8
726,409 + ABZR87_RS03470 0.53 -0.6
726,410 - ABZR87_RS03470 0.53 +0.4
726,410 - ABZR87_RS03470 0.53 +0.8
726,410 - ABZR87_RS03470 0.53 +0.2
726,410 - ABZR87_RS03470 0.53 -0.4
726,410 - ABZR87_RS03470 0.53 +0.4
726,410 - ABZR87_RS03470 0.53 -1.1
726,410 - ABZR87_RS03470 0.53 +0.2
726,410 - ABZR87_RS03470 0.53 +0.0
726,431 - ABZR87_RS03470 0.54 -2.0
726,431 - ABZR87_RS03470 0.54 -0.0
726,520 + ABZR87_RS03470 0.60 +1.0
726,520 + ABZR87_RS03470 0.60 +0.1
726,520 + ABZR87_RS03470 0.60 +0.1
726,521 - ABZR87_RS03470 0.60 -0.4
726,595 + ABZR87_RS03470 0.66 +0.1
726,595 + ABZR87_RS03470 0.66 +0.5
726,596 - ABZR87_RS03470 0.66 -0.4
726,596 - ABZR87_RS03470 0.66 -0.5
726,596 - ABZR87_RS03470 0.66 +0.2
726,596 - ABZR87_RS03470 0.66 -1.0
726,596 - ABZR87_RS03470 0.66 +0.3
726,596 - ABZR87_RS03470 0.66 +1.7
726,643 + ABZR87_RS03470 0.69 +0.1
726,643 + ABZR87_RS03470 0.69 +0.3
726,793 + ABZR87_RS03470 0.79 -1.0
726,793 + ABZR87_RS03470 0.79 +1.5
726,793 + ABZR87_RS03470 0.79 -0.0
726,793 + ABZR87_RS03470 0.79 +0.1
726,794 - ABZR87_RS03470 0.79 -0.7
726,794 - ABZR87_RS03470 0.79 +0.2
727,003 + +0.0
727,003 + -1.6
727,003 + -0.5
727,003 + +0.5
727,003 + -0.8
727,003 + -1.6
727,003 + +0.8
727,004 - +0.6
727,004 - -0.4
727,004 - +0.2
727,004 - +0.4
727,004 - -1.0
727,004 - -0.8
727,004 - -0.1
727,004 - +0.1
727,004 - +0.3
727,025 - +0.4
727,221 - ABZR87_RS03475 0.17 +0.3
727,250 + ABZR87_RS03475 0.22 +0.7
727,250 + ABZR87_RS03475 0.22 -0.1
727,251 - ABZR87_RS03475 0.22 -0.5
727,262 + ABZR87_RS03475 0.24 +0.1
727,263 - ABZR87_RS03475 0.24 -0.8
727,263 - ABZR87_RS03475 0.24 +0.2
727,397 + ABZR87_RS03475 0.44 -0.4
727,398 - ABZR87_RS03475 0.44 -0.2
727,505 + ABZR87_RS03475 0.60 -0.7
727,505 + ABZR87_RS03475 0.60 +0.1
727,505 + ABZR87_RS03475 0.60 -0.9
727,506 - ABZR87_RS03475 0.60 -0.0
727,506 - ABZR87_RS03475 0.60 +0.7
727,511 + ABZR87_RS03475 0.61 -0.2
727,511 + ABZR87_RS03475 0.61 +0.1
727,512 - ABZR87_RS03475 0.61 +0.1
727,512 - ABZR87_RS03475 0.61 -0.8
727,512 - ABZR87_RS03475 0.61 +0.2
727,512 - ABZR87_RS03475 0.61 -1.5
727,512 - ABZR87_RS03475 0.61 +0.8
727,616 + ABZR87_RS03475 0.77 +0.8
727,616 + ABZR87_RS03475 0.77 -2.0
727,616 + ABZR87_RS03475 0.77 -1.3
727,617 - ABZR87_RS03475 0.77 +0.6
727,617 - ABZR87_RS03475 0.77 +0.1
727,617 - ABZR87_RS03475 0.77 -0.0
727,617 - ABZR87_RS03475 0.77 -0.7
727,617 - ABZR87_RS03475 0.77 +0.3
727,617 - ABZR87_RS03475 0.77 -1.3
727,617 - ABZR87_RS03475 0.77 -0.8
727,617 - ABZR87_RS03475 0.77 +0.6
727,617 - ABZR87_RS03475 0.77 -0.2
727,867 + ABZR87_RS03480 0.12 +0.0
727,867 + ABZR87_RS03480 0.12 +0.5
727,868 - ABZR87_RS03480 0.12 -0.9
727,876 + ABZR87_RS03480 0.13 -0.7

Or see this region's nucleotide sequence