Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03350

Experiment: soil sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03340 and ABZR87_RS03345 are separated by 125 nucleotidesABZR87_RS03345 and ABZR87_RS03350 are separated by 124 nucleotidesABZR87_RS03350 and ABZR87_RS03355 overlap by 10 nucleotidesABZR87_RS03355 and ABZR87_RS03360 are separated by 18 nucleotidesABZR87_RS03360 and ABZR87_RS03365 are separated by 37 nucleotides ABZR87_RS03340: ABZR87_RS03340 - VOC family protein, at 703,684 to 704,076 _RS03340 ABZR87_RS03345: ABZR87_RS03345 - cupin domain-containing protein, at 704,202 to 704,693 _RS03345 ABZR87_RS03350: ABZR87_RS03350 - LysM domain-containing protein, at 704,818 to 705,561 _RS03350 ABZR87_RS03355: ABZR87_RS03355 - hypothetical protein, at 705,552 to 705,965 _RS03355 ABZR87_RS03360: ABZR87_RS03360 - hypothetical protein, at 705,984 to 706,421 _RS03360 ABZR87_RS03365: ABZR87_RS03365 - SgcJ/EcaC family oxidoreductase, at 706,459 to 706,848 _RS03365 Position (kb) 704 705 706Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 704.008 kb on + strand, within ABZR87_RS03340at 704.008 kb on + strand, within ABZR87_RS03340at 704.008 kb on + strand, within ABZR87_RS03340at 704.009 kb on - strand, within ABZR87_RS03340at 704.115 kb on + strandat 704.115 kb on + strandat 704.115 kb on + strandat 704.115 kb on + strandat 704.116 kb on - strandat 704.116 kb on - strandat 704.116 kb on - strandat 704.382 kb on + strand, within ABZR87_RS03345at 704.382 kb on + strand, within ABZR87_RS03345at 704.383 kb on - strand, within ABZR87_RS03345at 704.383 kb on - strand, within ABZR87_RS03345at 704.409 kb on + strand, within ABZR87_RS03345at 704.409 kb on + strand, within ABZR87_RS03345at 704.409 kb on + strand, within ABZR87_RS03345at 704.409 kb on + strand, within ABZR87_RS03345at 704.409 kb on + strand, within ABZR87_RS03345at 704.409 kb on + strand, within ABZR87_RS03345at 704.409 kb on + strand, within ABZR87_RS03345at 704.409 kb on + strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.410 kb on - strand, within ABZR87_RS03345at 704.439 kb on + strand, within ABZR87_RS03345at 704.440 kb on - strand, within ABZR87_RS03345at 704.440 kb on - strand, within ABZR87_RS03345at 704.502 kb on + strand, within ABZR87_RS03345at 704.502 kb on + strand, within ABZR87_RS03345at 704.502 kb on + strand, within ABZR87_RS03345at 704.502 kb on + strand, within ABZR87_RS03345at 704.502 kb on + strand, within ABZR87_RS03345at 704.502 kb on + strand, within ABZR87_RS03345at 704.502 kb on + strand, within ABZR87_RS03345at 704.502 kb on + strand, within ABZR87_RS03345at 704.502 kb on + strand, within ABZR87_RS03345at 704.503 kb on - strand, within ABZR87_RS03345at 704.503 kb on - strand, within ABZR87_RS03345at 704.503 kb on - strand, within ABZR87_RS03345at 704.503 kb on - strand, within ABZR87_RS03345at 704.503 kb on - strand, within ABZR87_RS03345at 704.503 kb on - strand, within ABZR87_RS03345at 704.592 kb on + strand, within ABZR87_RS03345at 704.592 kb on + strand, within ABZR87_RS03345at 704.592 kb on + strand, within ABZR87_RS03345at 704.592 kb on + strand, within ABZR87_RS03345at 704.592 kb on + strand, within ABZR87_RS03345at 704.592 kb on + strand, within ABZR87_RS03345at 704.593 kb on - strand, within ABZR87_RS03345at 704.593 kb on - strand, within ABZR87_RS03345at 704.593 kb on - strand, within ABZR87_RS03345at 704.655 kb on + strandat 704.655 kb on + strandat 704.655 kb on + strandat 704.655 kb on + strandat 704.656 kb on - strandat 704.656 kb on - strandat 704.656 kb on - strandat 704.656 kb on - strandat 704.656 kb on - strandat 704.737 kb on + strandat 704.737 kb on + strandat 704.737 kb on + strandat 704.737 kb on + strandat 704.741 kb on + strandat 704.741 kb on + strandat 704.741 kb on + strandat 704.741 kb on + strandat 704.741 kb on + strandat 704.742 kb on - strandat 704.742 kb on - strandat 704.742 kb on - strandat 704.742 kb on - strandat 704.742 kb on - strandat 704.742 kb on - strandat 704.742 kb on - strandat 704.872 kb on + strandat 704.872 kb on + strandat 704.872 kb on + strandat 704.872 kb on + strandat 704.873 kb on - strandat 704.873 kb on - strandat 704.873 kb on - strandat 704.873 kb on - strandat 704.873 kb on - strandat 704.914 kb on + strand, within ABZR87_RS03350at 704.915 kb on - strand, within ABZR87_RS03350at 704.915 kb on - strand, within ABZR87_RS03350at 704.947 kb on + strand, within ABZR87_RS03350at 704.947 kb on + strand, within ABZR87_RS03350at 704.947 kb on + strand, within ABZR87_RS03350at 704.948 kb on - strand, within ABZR87_RS03350at 704.948 kb on - strand, within ABZR87_RS03350at 704.948 kb on - strand, within ABZR87_RS03350at 705.096 kb on + strand, within ABZR87_RS03350at 705.096 kb on + strand, within ABZR87_RS03350at 705.096 kb on + strand, within ABZR87_RS03350at 705.096 kb on + strand, within ABZR87_RS03350at 705.097 kb on - strand, within ABZR87_RS03350at 705.097 kb on - strand, within ABZR87_RS03350at 705.277 kb on + strand, within ABZR87_RS03350at 705.277 kb on + strand, within ABZR87_RS03350at 705.278 kb on - strand, within ABZR87_RS03350at 705.278 kb on - strand, within ABZR87_RS03350at 705.278 kb on - strand, within ABZR87_RS03350at 705.278 kb on - strand, within ABZR87_RS03350at 705.278 kb on - strand, within ABZR87_RS03350at 705.278 kb on - strand, within ABZR87_RS03350at 705.278 kb on - strand, within ABZR87_RS03350at 705.278 kb on - strand, within ABZR87_RS03350at 705.278 kb on - strand, within ABZR87_RS03350at 705.303 kb on + strand, within ABZR87_RS03350at 705.303 kb on + strand, within ABZR87_RS03350at 705.303 kb on + strand, within ABZR87_RS03350at 705.303 kb on + strand, within ABZR87_RS03350at 705.303 kb on + strand, within ABZR87_RS03350at 705.303 kb on + strand, within ABZR87_RS03350at 705.303 kb on + strand, within ABZR87_RS03350at 705.303 kb on + strand, within ABZR87_RS03350at 705.304 kb on - strand, within ABZR87_RS03350at 705.304 kb on - strand, within ABZR87_RS03350at 705.304 kb on - strand, within ABZR87_RS03350at 705.304 kb on - strand, within ABZR87_RS03350at 705.304 kb on - strand, within ABZR87_RS03350at 705.304 kb on - strand, within ABZR87_RS03350at 705.304 kb on - strand, within ABZR87_RS03350at 705.304 kb on - strand, within ABZR87_RS03350at 705.304 kb on - strand, within ABZR87_RS03350at 705.403 kb on + strand, within ABZR87_RS03350at 705.403 kb on + strand, within ABZR87_RS03350at 705.403 kb on + strand, within ABZR87_RS03350at 705.404 kb on - strand, within ABZR87_RS03350at 705.433 kb on - strand, within ABZR87_RS03350at 705.475 kb on + strand, within ABZR87_RS03350at 705.475 kb on + strand, within ABZR87_RS03350at 705.475 kb on + strand, within ABZR87_RS03350at 705.475 kb on + strand, within ABZR87_RS03350at 705.476 kb on - strand, within ABZR87_RS03350at 705.476 kb on - strand, within ABZR87_RS03350at 705.476 kb on - strand, within ABZR87_RS03350at 705.476 kb on - strand, within ABZR87_RS03350at 705.476 kb on - strand, within ABZR87_RS03350at 705.476 kb on - strand, within ABZR87_RS03350at 705.496 kb on + strandat 705.496 kb on + strandat 705.496 kb on + strandat 705.496 kb on + strandat 705.496 kb on + strandat 705.496 kb on + strandat 705.497 kb on - strandat 705.497 kb on - strandat 705.514 kb on + strandat 705.514 kb on + strandat 705.515 kb on - strandat 705.515 kb on - strandat 705.515 kb on - strandat 705.515 kb on - strandat 705.559 kb on + strandat 705.559 kb on + strandat 705.560 kb on - strandat 705.560 kb on - strandat 705.560 kb on - strandat 705.618 kb on - strand, within ABZR87_RS03355at 705.657 kb on + strand, within ABZR87_RS03355at 705.857 kb on - strand, within ABZR87_RS03355at 705.963 kb on + strandat 705.964 kb on - strandat 705.964 kb on - strandat 705.964 kb on - strandat 705.964 kb on - strandat 705.964 kb on - strandat 705.964 kb on - strandat 706.029 kb on + strand, within ABZR87_RS03360at 706.030 kb on - strand, within ABZR87_RS03360at 706.030 kb on - strand, within ABZR87_RS03360at 706.030 kb on - strand, within ABZR87_RS03360at 706.030 kb on - strand, within ABZR87_RS03360at 706.030 kb on - strand, within ABZR87_RS03360at 706.101 kb on + strand, within ABZR87_RS03360at 706.101 kb on + strand, within ABZR87_RS03360at 706.102 kb on - strand, within ABZR87_RS03360at 706.119 kb on + strand, within ABZR87_RS03360at 706.120 kb on - strand, within ABZR87_RS03360at 706.155 kb on + strand, within ABZR87_RS03360at 706.155 kb on + strand, within ABZR87_RS03360at 706.155 kb on + strand, within ABZR87_RS03360at 706.155 kb on + strand, within ABZR87_RS03360at 706.155 kb on + strand, within ABZR87_RS03360at 706.156 kb on - strand, within ABZR87_RS03360at 706.156 kb on - strand, within ABZR87_RS03360at 706.246 kb on - strand, within ABZR87_RS03360at 706.246 kb on - strand, within ABZR87_RS03360at 706.246 kb on - strand, within ABZR87_RS03360at 706.248 kb on + strand, within ABZR87_RS03360at 706.248 kb on + strand, within ABZR87_RS03360at 706.248 kb on + strand, within ABZR87_RS03360at 706.248 kb on + strand, within ABZR87_RS03360at 706.248 kb on + strand, within ABZR87_RS03360at 706.248 kb on + strand, within ABZR87_RS03360at 706.249 kb on - strand, within ABZR87_RS03360at 706.249 kb on - strand, within ABZR87_RS03360at 706.249 kb on - strand, within ABZR87_RS03360at 706.249 kb on - strand, within ABZR87_RS03360at 706.249 kb on - strand, within ABZR87_RS03360at 706.249 kb on - strand, within ABZR87_RS03360at 706.249 kb on - strand, within ABZR87_RS03360at 706.249 kb on - strand, within ABZR87_RS03360at 706.352 kb on + strand, within ABZR87_RS03360at 706.363 kb on + strand, within ABZR87_RS03360at 706.363 kb on + strand, within ABZR87_RS03360at 706.364 kb on - strand, within ABZR87_RS03360at 706.364 kb on - strand, within ABZR87_RS03360at 706.364 kb on - strand, within ABZR87_RS03360at 706.364 kb on - strand, within ABZR87_RS03360at 706.419 kb on + strandat 706.420 kb on - strandat 706.420 kb on - strandat 706.420 kb on - strandat 706.420 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 6; outgrowth in LB
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704,008 + ABZR87_RS03340 0.82 +0.5
704,008 + ABZR87_RS03340 0.82 -0.7
704,008 + ABZR87_RS03340 0.82 +0.7
704,009 - ABZR87_RS03340 0.83 +0.1
704,115 + +0.2
704,115 + -1.1
704,115 + +0.7
704,115 + -0.3
704,116 - +0.2
704,116 - +0.1
704,116 - -0.9
704,382 + ABZR87_RS03345 0.37 +1.3
704,382 + ABZR87_RS03345 0.37 -0.4
704,383 - ABZR87_RS03345 0.37 +0.4
704,383 - ABZR87_RS03345 0.37 +1.0
704,409 + ABZR87_RS03345 0.42 +0.2
704,409 + ABZR87_RS03345 0.42 +1.3
704,409 + ABZR87_RS03345 0.42 +0.1
704,409 + ABZR87_RS03345 0.42 -0.8
704,409 + ABZR87_RS03345 0.42 +0.5
704,409 + ABZR87_RS03345 0.42 +0.3
704,409 + ABZR87_RS03345 0.42 -0.8
704,409 + ABZR87_RS03345 0.42 -0.8
704,410 - ABZR87_RS03345 0.42 -0.7
704,410 - ABZR87_RS03345 0.42 +1.1
704,410 - ABZR87_RS03345 0.42 +0.7
704,410 - ABZR87_RS03345 0.42 -1.7
704,410 - ABZR87_RS03345 0.42 -0.6
704,410 - ABZR87_RS03345 0.42 -0.6
704,410 - ABZR87_RS03345 0.42 +0.2
704,410 - ABZR87_RS03345 0.42 -0.4
704,410 - ABZR87_RS03345 0.42 +0.8
704,410 - ABZR87_RS03345 0.42 -1.0
704,410 - ABZR87_RS03345 0.42 +1.0
704,410 - ABZR87_RS03345 0.42 -0.0
704,410 - ABZR87_RS03345 0.42 +0.5
704,439 + ABZR87_RS03345 0.48 -0.7
704,440 - ABZR87_RS03345 0.48 -0.4
704,440 - ABZR87_RS03345 0.48 +0.1
704,502 + ABZR87_RS03345 0.61 +0.7
704,502 + ABZR87_RS03345 0.61 -0.4
704,502 + ABZR87_RS03345 0.61 +0.5
704,502 + ABZR87_RS03345 0.61 -0.2
704,502 + ABZR87_RS03345 0.61 +0.0
704,502 + ABZR87_RS03345 0.61 +0.5
704,502 + ABZR87_RS03345 0.61 +1.4
704,502 + ABZR87_RS03345 0.61 +0.0
704,502 + ABZR87_RS03345 0.61 +0.3
704,503 - ABZR87_RS03345 0.61 +1.0
704,503 - ABZR87_RS03345 0.61 -0.3
704,503 - ABZR87_RS03345 0.61 -0.3
704,503 - ABZR87_RS03345 0.61 +0.0
704,503 - ABZR87_RS03345 0.61 +0.7
704,503 - ABZR87_RS03345 0.61 +0.2
704,592 + ABZR87_RS03345 0.79 -0.2
704,592 + ABZR87_RS03345 0.79 -2.5
704,592 + ABZR87_RS03345 0.79 +0.6
704,592 + ABZR87_RS03345 0.79 +0.6
704,592 + ABZR87_RS03345 0.79 -0.2
704,592 + ABZR87_RS03345 0.79 +0.6
704,593 - ABZR87_RS03345 0.79 +0.2
704,593 - ABZR87_RS03345 0.79 +0.1
704,593 - ABZR87_RS03345 0.79 +0.5
704,655 + +1.8
704,655 + +1.1
704,655 + +0.0
704,655 + -0.1
704,656 - +0.4
704,656 - +0.2
704,656 - +0.9
704,656 - +0.2
704,656 - -0.4
704,737 + -1.1
704,737 + -0.8
704,737 + -0.2
704,737 + +0.1
704,741 + +0.4
704,741 + +0.7
704,741 + +0.5
704,741 + +0.1
704,741 + -0.0
704,742 - +0.9
704,742 - +0.3
704,742 - -0.3
704,742 - -0.1
704,742 - +0.7
704,742 - -1.0
704,742 - -0.9
704,872 + +0.4
704,872 + +0.5
704,872 + -0.1
704,872 + -0.2
704,873 - +0.8
704,873 - +0.1
704,873 - -0.7
704,873 - +0.7
704,873 - +0.1
704,914 + ABZR87_RS03350 0.13 +1.9
704,915 - ABZR87_RS03350 0.13 +0.9
704,915 - ABZR87_RS03350 0.13 -1.3
704,947 + ABZR87_RS03350 0.17 -0.3
704,947 + ABZR87_RS03350 0.17 +0.3
704,947 + ABZR87_RS03350 0.17 +1.0
704,948 - ABZR87_RS03350 0.17 +0.1
704,948 - ABZR87_RS03350 0.17 -0.4
704,948 - ABZR87_RS03350 0.17 -0.3
705,096 + ABZR87_RS03350 0.37 -0.7
705,096 + ABZR87_RS03350 0.37 +0.2
705,096 + ABZR87_RS03350 0.37 +0.3
705,096 + ABZR87_RS03350 0.37 -0.3
705,097 - ABZR87_RS03350 0.38 -0.2
705,097 - ABZR87_RS03350 0.38 -0.4
705,277 + ABZR87_RS03350 0.62 -0.0
705,277 + ABZR87_RS03350 0.62 +0.3
705,278 - ABZR87_RS03350 0.62 +0.5
705,278 - ABZR87_RS03350 0.62 +0.7
705,278 - ABZR87_RS03350 0.62 +0.2
705,278 - ABZR87_RS03350 0.62 -0.1
705,278 - ABZR87_RS03350 0.62 +0.2
705,278 - ABZR87_RS03350 0.62 +0.5
705,278 - ABZR87_RS03350 0.62 -0.2
705,278 - ABZR87_RS03350 0.62 +1.1
705,278 - ABZR87_RS03350 0.62 +0.5
705,303 + ABZR87_RS03350 0.65 +0.4
705,303 + ABZR87_RS03350 0.65 +0.3
705,303 + ABZR87_RS03350 0.65 +0.3
705,303 + ABZR87_RS03350 0.65 -0.1
705,303 + ABZR87_RS03350 0.65 +0.0
705,303 + ABZR87_RS03350 0.65 -0.1
705,303 + ABZR87_RS03350 0.65 +0.4
705,303 + ABZR87_RS03350 0.65 +1.0
705,304 - ABZR87_RS03350 0.65 +1.8
705,304 - ABZR87_RS03350 0.65 +0.8
705,304 - ABZR87_RS03350 0.65 +0.6
705,304 - ABZR87_RS03350 0.65 +0.7
705,304 - ABZR87_RS03350 0.65 +0.5
705,304 - ABZR87_RS03350 0.65 +0.1
705,304 - ABZR87_RS03350 0.65 -0.9
705,304 - ABZR87_RS03350 0.65 -0.2
705,304 - ABZR87_RS03350 0.65 -3.0
705,403 + ABZR87_RS03350 0.79 +0.8
705,403 + ABZR87_RS03350 0.79 -1.0
705,403 + ABZR87_RS03350 0.79 -0.2
705,404 - ABZR87_RS03350 0.79 +0.4
705,433 - ABZR87_RS03350 0.83 -0.9
705,475 + ABZR87_RS03350 0.88 +0.5
705,475 + ABZR87_RS03350 0.88 +0.7
705,475 + ABZR87_RS03350 0.88 -1.5
705,475 + ABZR87_RS03350 0.88 +0.3
705,476 - ABZR87_RS03350 0.88 +0.4
705,476 - ABZR87_RS03350 0.88 +0.2
705,476 - ABZR87_RS03350 0.88 +0.4
705,476 - ABZR87_RS03350 0.88 -0.2
705,476 - ABZR87_RS03350 0.88 -0.3
705,476 - ABZR87_RS03350 0.88 -0.9
705,496 + +0.3
705,496 + +0.1
705,496 + -0.4
705,496 + +0.5
705,496 + +0.3
705,496 + +0.2
705,497 - +0.5
705,497 - +0.5
705,514 + +0.1
705,514 + +0.2
705,515 - -0.7
705,515 - +0.2
705,515 - +0.9
705,515 - -0.3
705,559 + +3.3
705,559 + +1.7
705,560 - +3.3
705,560 - +1.3
705,560 - +2.0
705,618 - ABZR87_RS03355 0.16 +3.3
705,657 + ABZR87_RS03355 0.25 +3.3
705,857 - ABZR87_RS03355 0.74 +3.3
705,963 + -0.0
705,964 - +0.3
705,964 - -0.6
705,964 - -0.3
705,964 - +0.5
705,964 - +0.2
705,964 - +0.4
706,029 + ABZR87_RS03360 0.10 +0.4
706,030 - ABZR87_RS03360 0.11 -0.7
706,030 - ABZR87_RS03360 0.11 -0.2
706,030 - ABZR87_RS03360 0.11 -0.4
706,030 - ABZR87_RS03360 0.11 +0.7
706,030 - ABZR87_RS03360 0.11 +0.8
706,101 + ABZR87_RS03360 0.27 -0.5
706,101 + ABZR87_RS03360 0.27 +0.1
706,102 - ABZR87_RS03360 0.27 +0.4
706,119 + ABZR87_RS03360 0.31 +0.3
706,120 - ABZR87_RS03360 0.31 +0.6
706,155 + ABZR87_RS03360 0.39 -0.8
706,155 + ABZR87_RS03360 0.39 -0.3
706,155 + ABZR87_RS03360 0.39 -0.3
706,155 + ABZR87_RS03360 0.39 -0.3
706,155 + ABZR87_RS03360 0.39 +0.3
706,156 - ABZR87_RS03360 0.39 +0.5
706,156 - ABZR87_RS03360 0.39 -0.4
706,246 - ABZR87_RS03360 0.60 -0.5
706,246 - ABZR87_RS03360 0.60 +0.8
706,246 - ABZR87_RS03360 0.60 +0.4
706,248 + ABZR87_RS03360 0.60 +0.4
706,248 + ABZR87_RS03360 0.60 -1.9
706,248 + ABZR87_RS03360 0.60 +0.2
706,248 + ABZR87_RS03360 0.60 -0.9
706,248 + ABZR87_RS03360 0.60 -0.9
706,248 + ABZR87_RS03360 0.60 -0.3
706,249 - ABZR87_RS03360 0.61 -0.6
706,249 - ABZR87_RS03360 0.61 -0.1
706,249 - ABZR87_RS03360 0.61 -0.2
706,249 - ABZR87_RS03360 0.61 -0.2
706,249 - ABZR87_RS03360 0.61 +0.3
706,249 - ABZR87_RS03360 0.61 +0.6
706,249 - ABZR87_RS03360 0.61 +0.3
706,249 - ABZR87_RS03360 0.61 +0.6
706,352 + ABZR87_RS03360 0.84 -1.0
706,363 + ABZR87_RS03360 0.87 +0.7
706,363 + ABZR87_RS03360 0.87 +0.1
706,364 - ABZR87_RS03360 0.87 -0.1
706,364 - ABZR87_RS03360 0.87 -0.3
706,364 - ABZR87_RS03360 0.87 +1.0
706,364 - ABZR87_RS03360 0.87 -0.9
706,419 + +1.5
706,420 - -0.1
706,420 - -1.5
706,420 - -0.6
706,420 - -0.7

Or see this region's nucleotide sequence