Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02645

Experiment: soil sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02640 and ABZR87_RS02645 are separated by 64 nucleotidesABZR87_RS02645 and ABZR87_RS02650 are separated by 7 nucleotides ABZR87_RS02640: ABZR87_RS02640 - diaminopimelate decarboxylase, at 561,405 to 562,664 _RS02640 ABZR87_RS02645: ABZR87_RS02645 - protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 562,729 to 563,385 _RS02645 ABZR87_RS02650: ABZR87_RS02650 - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 563,393 to 564,388 _RS02650 Position (kb) 562 563 564Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.888 kb on + strand, within ABZR87_RS02640at 561.889 kb on - strand, within ABZR87_RS02640at 561.889 kb on - strand, within ABZR87_RS02640at 561.889 kb on - strand, within ABZR87_RS02640at 561.889 kb on - strand, within ABZR87_RS02640at 561.889 kb on - strand, within ABZR87_RS02640at 561.889 kb on - strand, within ABZR87_RS02640at 561.889 kb on - strand, within ABZR87_RS02640at 561.952 kb on - strand, within ABZR87_RS02640at 562.130 kb on + strand, within ABZR87_RS02640at 562.131 kb on - strand, within ABZR87_RS02640at 562.137 kb on + strand, within ABZR87_RS02640at 562.137 kb on + strand, within ABZR87_RS02640at 562.137 kb on + strand, within ABZR87_RS02640at 562.137 kb on + strand, within ABZR87_RS02640at 562.137 kb on + strand, within ABZR87_RS02640at 562.137 kb on + strand, within ABZR87_RS02640at 562.137 kb on + strand, within ABZR87_RS02640at 562.137 kb on + strand, within ABZR87_RS02640at 562.138 kb on - strand, within ABZR87_RS02640at 562.138 kb on - strand, within ABZR87_RS02640at 562.138 kb on - strand, within ABZR87_RS02640at 562.138 kb on - strand, within ABZR87_RS02640at 562.362 kb on + strand, within ABZR87_RS02640at 562.362 kb on + strand, within ABZR87_RS02640at 562.362 kb on + strand, within ABZR87_RS02640at 562.362 kb on + strand, within ABZR87_RS02640at 562.363 kb on - strand, within ABZR87_RS02640at 562.363 kb on - strand, within ABZR87_RS02640at 562.371 kb on + strand, within ABZR87_RS02640at 562.371 kb on + strand, within ABZR87_RS02640at 562.371 kb on + strand, within ABZR87_RS02640at 562.372 kb on - strand, within ABZR87_RS02640at 562.372 kb on - strand, within ABZR87_RS02640at 562.419 kb on + strand, within ABZR87_RS02640at 562.420 kb on - strand, within ABZR87_RS02640at 562.548 kb on + strandat 562.548 kb on + strandat 562.548 kb on + strandat 562.549 kb on - strandat 562.549 kb on - strandat 562.662 kb on + strandat 562.663 kb on - strandat 562.663 kb on - strandat 562.829 kb on + strand, within ABZR87_RS02645at 562.876 kb on + strand, within ABZR87_RS02645at 562.878 kb on - strand, within ABZR87_RS02645at 562.878 kb on - strand, within ABZR87_RS02645at 562.878 kb on - strand, within ABZR87_RS02645at 562.907 kb on + strand, within ABZR87_RS02645at 562.907 kb on + strand, within ABZR87_RS02645at 562.908 kb on - strand, within ABZR87_RS02645at 563.123 kb on + strand, within ABZR87_RS02645at 563.124 kb on - strand, within ABZR87_RS02645at 563.124 kb on - strand, within ABZR87_RS02645at 563.124 kb on - strand, within ABZR87_RS02645at 563.124 kb on - strand, within ABZR87_RS02645at 563.405 kb on - strandat 563.424 kb on + strandat 563.424 kb on + strandat 563.425 kb on - strandat 563.425 kb on - strandat 563.446 kb on - strandat 563.574 kb on + strand, within ABZR87_RS02650at 563.574 kb on + strand, within ABZR87_RS02650at 563.574 kb on + strand, within ABZR87_RS02650at 563.574 kb on + strand, within ABZR87_RS02650at 563.574 kb on + strand, within ABZR87_RS02650at 563.575 kb on - strand, within ABZR87_RS02650at 563.583 kb on + strand, within ABZR87_RS02650at 563.584 kb on - strand, within ABZR87_RS02650at 563.673 kb on + strand, within ABZR87_RS02650at 563.673 kb on + strand, within ABZR87_RS02650at 563.673 kb on + strand, within ABZR87_RS02650at 563.673 kb on + strand, within ABZR87_RS02650at 563.673 kb on + strand, within ABZR87_RS02650at 563.673 kb on + strand, within ABZR87_RS02650at 563.674 kb on - strand, within ABZR87_RS02650at 563.674 kb on - strand, within ABZR87_RS02650at 563.674 kb on - strand, within ABZR87_RS02650at 563.674 kb on - strand, within ABZR87_RS02650at 563.674 kb on - strand, within ABZR87_RS02650at 563.674 kb on - strand, within ABZR87_RS02650at 563.674 kb on - strand, within ABZR87_RS02650at 563.733 kb on + strand, within ABZR87_RS02650at 563.796 kb on + strand, within ABZR87_RS02650at 563.797 kb on - strand, within ABZR87_RS02650at 563.797 kb on - strand, within ABZR87_RS02650at 563.797 kb on - strand, within ABZR87_RS02650at 563.868 kb on + strand, within ABZR87_RS02650at 563.868 kb on + strand, within ABZR87_RS02650at 563.868 kb on + strand, within ABZR87_RS02650at 563.868 kb on + strand, within ABZR87_RS02650at 563.869 kb on - strand, within ABZR87_RS02650at 563.869 kb on - strand, within ABZR87_RS02650at 563.869 kb on - strand, within ABZR87_RS02650at 563.869 kb on - strand, within ABZR87_RS02650at 563.869 kb on - strand, within ABZR87_RS02650at 563.869 kb on - strand, within ABZR87_RS02650at 563.869 kb on - strand, within ABZR87_RS02650at 563.971 kb on - strand, within ABZR87_RS02650at 564.019 kb on - strand, within ABZR87_RS02650at 564.019 kb on - strand, within ABZR87_RS02650at 564.019 kb on - strand, within ABZR87_RS02650at 564.019 kb on - strand, within ABZR87_RS02650at 564.019 kb on - strand, within ABZR87_RS02650at 564.124 kb on - strand, within ABZR87_RS02650at 564.124 kb on - strand, within ABZR87_RS02650at 564.135 kb on + strand, within ABZR87_RS02650at 564.135 kb on + strand, within ABZR87_RS02650at 564.135 kb on + strand, within ABZR87_RS02650at 564.136 kb on - strand, within ABZR87_RS02650at 564.136 kb on - strand, within ABZR87_RS02650at 564.136 kb on - strand, within ABZR87_RS02650at 564.136 kb on - strand, within ABZR87_RS02650at 564.136 kb on - strand, within ABZR87_RS02650at 564.136 kb on - strand, within ABZR87_RS02650at 564.136 kb on - strand, within ABZR87_RS02650at 564.154 kb on - strand, within ABZR87_RS02650at 564.154 kb on - strand, within ABZR87_RS02650at 564.180 kb on + strand, within ABZR87_RS02650at 564.181 kb on - strand, within ABZR87_RS02650

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 6; outgrowth in LB
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561,888 + ABZR87_RS02640 0.38 -2.6
561,888 + ABZR87_RS02640 0.38 -2.8
561,888 + ABZR87_RS02640 0.38 -1.6
561,888 + ABZR87_RS02640 0.38 +0.6
561,888 + ABZR87_RS02640 0.38 -3.9
561,888 + ABZR87_RS02640 0.38 -2.3
561,888 + ABZR87_RS02640 0.38 -1.9
561,888 + ABZR87_RS02640 0.38 -1.6
561,888 + ABZR87_RS02640 0.38 -2.6
561,888 + ABZR87_RS02640 0.38 -1.6
561,889 - ABZR87_RS02640 0.38 -3.1
561,889 - ABZR87_RS02640 0.38 -2.5
561,889 - ABZR87_RS02640 0.38 -1.2
561,889 - ABZR87_RS02640 0.38 -0.8
561,889 - ABZR87_RS02640 0.38 -1.5
561,889 - ABZR87_RS02640 0.38 -0.9
561,889 - ABZR87_RS02640 0.38 -0.9
561,952 - ABZR87_RS02640 0.43 -2.6
562,130 + ABZR87_RS02640 0.58 +1.7
562,131 - ABZR87_RS02640 0.58 -2.0
562,137 + ABZR87_RS02640 0.58 -2.8
562,137 + ABZR87_RS02640 0.58 -2.6
562,137 + ABZR87_RS02640 0.58 -1.2
562,137 + ABZR87_RS02640 0.58 -1.1
562,137 + ABZR87_RS02640 0.58 -2.5
562,137 + ABZR87_RS02640 0.58 -3.2
562,137 + ABZR87_RS02640 0.58 -1.2
562,137 + ABZR87_RS02640 0.58 -4.9
562,138 - ABZR87_RS02640 0.58 -2.2
562,138 - ABZR87_RS02640 0.58 -1.9
562,138 - ABZR87_RS02640 0.58 -2.6
562,138 - ABZR87_RS02640 0.58 -2.4
562,362 + ABZR87_RS02640 0.76 -1.3
562,362 + ABZR87_RS02640 0.76 -1.1
562,362 + ABZR87_RS02640 0.76 +0.5
562,362 + ABZR87_RS02640 0.76 -3.1
562,363 - ABZR87_RS02640 0.76 -1.3
562,363 - ABZR87_RS02640 0.76 +0.7
562,371 + ABZR87_RS02640 0.77 -2.2
562,371 + ABZR87_RS02640 0.77 -2.6
562,371 + ABZR87_RS02640 0.77 -1.3
562,372 - ABZR87_RS02640 0.77 -1.0
562,372 - ABZR87_RS02640 0.77 -2.0
562,419 + ABZR87_RS02640 0.80 -2.2
562,420 - ABZR87_RS02640 0.81 -2.0
562,548 + -1.8
562,548 + +0.4
562,548 + -1.1
562,549 - -2.3
562,549 - -2.3
562,662 + -0.1
562,663 - -0.1
562,663 - +2.1
562,829 + ABZR87_RS02645 0.15 +0.8
562,876 + ABZR87_RS02645 0.22 -0.0
562,878 - ABZR87_RS02645 0.23 -0.3
562,878 - ABZR87_RS02645 0.23 +0.6
562,878 - ABZR87_RS02645 0.23 +0.9
562,907 + ABZR87_RS02645 0.27 -0.2
562,907 + ABZR87_RS02645 0.27 -0.2
562,908 - ABZR87_RS02645 0.27 +1.5
563,123 + ABZR87_RS02645 0.60 +0.2
563,124 - ABZR87_RS02645 0.60 -0.9
563,124 - ABZR87_RS02645 0.60 +0.6
563,124 - ABZR87_RS02645 0.60 +1.8
563,124 - ABZR87_RS02645 0.60 +0.1
563,405 - -0.7
563,424 + +1.1
563,424 + -0.5
563,425 - +1.1
563,425 - -0.5
563,446 - +0.4
563,574 + ABZR87_RS02650 0.18 +0.2
563,574 + ABZR87_RS02650 0.18 +1.5
563,574 + ABZR87_RS02650 0.18 +0.9
563,574 + ABZR87_RS02650 0.18 -0.2
563,574 + ABZR87_RS02650 0.18 +0.7
563,575 - ABZR87_RS02650 0.18 +0.4
563,583 + ABZR87_RS02650 0.19 -0.5
563,584 - ABZR87_RS02650 0.19 -0.5
563,673 + ABZR87_RS02650 0.28 +0.1
563,673 + ABZR87_RS02650 0.28 -0.8
563,673 + ABZR87_RS02650 0.28 -2.1
563,673 + ABZR87_RS02650 0.28 +0.7
563,673 + ABZR87_RS02650 0.28 -1.1
563,673 + ABZR87_RS02650 0.28 -0.8
563,674 - ABZR87_RS02650 0.28 +0.3
563,674 - ABZR87_RS02650 0.28 +0.2
563,674 - ABZR87_RS02650 0.28 +0.2
563,674 - ABZR87_RS02650 0.28 +0.1
563,674 - ABZR87_RS02650 0.28 -0.2
563,674 - ABZR87_RS02650 0.28 -0.1
563,674 - ABZR87_RS02650 0.28 -0.7
563,733 + ABZR87_RS02650 0.34 +0.2
563,796 + ABZR87_RS02650 0.40 +0.5
563,797 - ABZR87_RS02650 0.41 +1.2
563,797 - ABZR87_RS02650 0.41 -0.7
563,797 - ABZR87_RS02650 0.41 +0.3
563,868 + ABZR87_RS02650 0.48 -1.9
563,868 + ABZR87_RS02650 0.48 -0.7
563,868 + ABZR87_RS02650 0.48 +0.8
563,868 + ABZR87_RS02650 0.48 +0.7
563,869 - ABZR87_RS02650 0.48 +0.3
563,869 - ABZR87_RS02650 0.48 -1.8
563,869 - ABZR87_RS02650 0.48 -0.6
563,869 - ABZR87_RS02650 0.48 -0.9
563,869 - ABZR87_RS02650 0.48 -0.3
563,869 - ABZR87_RS02650 0.48 +1.1
563,869 - ABZR87_RS02650 0.48 -0.1
563,971 - ABZR87_RS02650 0.58 +1.0
564,019 - ABZR87_RS02650 0.63 -2.1
564,019 - ABZR87_RS02650 0.63 -0.4
564,019 - ABZR87_RS02650 0.63 -0.5
564,019 - ABZR87_RS02650 0.63 -0.6
564,019 - ABZR87_RS02650 0.63 +0.2
564,124 - ABZR87_RS02650 0.73 +0.6
564,124 - ABZR87_RS02650 0.73 -0.2
564,135 + ABZR87_RS02650 0.74 +0.1
564,135 + ABZR87_RS02650 0.74 +0.5
564,135 + ABZR87_RS02650 0.74 -0.7
564,136 - ABZR87_RS02650 0.75 -0.1
564,136 - ABZR87_RS02650 0.75 -0.1
564,136 - ABZR87_RS02650 0.75 +0.2
564,136 - ABZR87_RS02650 0.75 -0.1
564,136 - ABZR87_RS02650 0.75 +1.2
564,136 - ABZR87_RS02650 0.75 -0.9
564,136 - ABZR87_RS02650 0.75 -0.2
564,154 - ABZR87_RS02650 0.76 +0.4
564,154 - ABZR87_RS02650 0.76 +0.2
564,180 + ABZR87_RS02650 0.79 -0.1
564,181 - ABZR87_RS02650 0.79 -1.9

Or see this region's nucleotide sequence