Experiment: soil sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01890 and ABZR87_RS01895 are separated by 251 nucleotides ABZR87_RS01895 and ABZR87_RS01900 are separated by 69 nucleotides ABZR87_RS01900 and ABZR87_RS01905 are separated by 49 nucleotides
ABZR87_RS01890: ABZR87_RS01890 - preprotein translocase subunit SecA, at 399,359 to 402,163
_RS01890
ABZR87_RS01895: ABZR87_RS01895 - M23 family metallopeptidase, at 402,415 to 403,377
_RS01895
ABZR87_RS01900: ABZR87_RS01900 - DciA family protein, at 403,447 to 403,968
_RS01900
ABZR87_RS01905: ABZR87_RS01905 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 404,018 to 404,935
_RS01905
Position (kb) 402
403
404 Strain fitness (log2 ratio) -2
-1
0
1 at 402.266 kb on + strand at 402.266 kb on + strand at 402.267 kb on - strand at 402.267 kb on - strand at 402.267 kb on - strand at 402.267 kb on - strand at 402.267 kb on - strand at 402.267 kb on - strand at 402.665 kb on + strand, within ABZR87_RS01895 at 402.665 kb on + strand, within ABZR87_RS01895 at 402.666 kb on - strand, within ABZR87_RS01895 at 402.666 kb on - strand, within ABZR87_RS01895 at 402.666 kb on - strand, within ABZR87_RS01895 at 402.703 kb on - strand, within ABZR87_RS01895 at 402.713 kb on + strand, within ABZR87_RS01895 at 402.713 kb on + strand, within ABZR87_RS01895 at 402.761 kb on - strand, within ABZR87_RS01895 at 402.761 kb on - strand, within ABZR87_RS01895 at 402.860 kb on + strand, within ABZR87_RS01895 at 402.945 kb on - strand, within ABZR87_RS01895 at 403.260 kb on + strand, within ABZR87_RS01895 at 403.260 kb on + strand, within ABZR87_RS01895 at 403.260 kb on + strand, within ABZR87_RS01895 at 403.261 kb on - strand, within ABZR87_RS01895 at 403.261 kb on - strand, within ABZR87_RS01895 at 403.261 kb on - strand, within ABZR87_RS01895 at 403.368 kb on + strand at 403.368 kb on + strand at 403.369 kb on - strand at 403.369 kb on - strand at 403.369 kb on - strand at 403.435 kb on + strand at 403.435 kb on + strand at 403.435 kb on + strand at 403.435 kb on + strand at 403.435 kb on + strand at 403.435 kb on + strand at 403.435 kb on + strand at 403.435 kb on + strand at 403.435 kb on + strand at 403.436 kb on - strand at 403.436 kb on - strand at 403.436 kb on - strand at 403.966 kb on + strand at 403.967 kb on - strand at 403.997 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 6; outgrowth in LB remove 402,266 + -1.5 402,266 + -1.2 402,267 - +1.4 402,267 - -0.8 402,267 - +0.4 402,267 - +0.3 402,267 - +0.4 402,267 - +0.8 402,665 + ABZR87_RS01895 0.26 -0.5 402,665 + ABZR87_RS01895 0.26 +0.5 402,666 - ABZR87_RS01895 0.26 +0.8 402,666 - ABZR87_RS01895 0.26 +0.7 402,666 - ABZR87_RS01895 0.26 -0.3 402,703 - ABZR87_RS01895 0.30 +0.2 402,713 + ABZR87_RS01895 0.31 -0.3 402,713 + ABZR87_RS01895 0.31 -0.3 402,761 - ABZR87_RS01895 0.36 +0.8 402,761 - ABZR87_RS01895 0.36 +0.6 402,860 + ABZR87_RS01895 0.46 +1.2 402,945 - ABZR87_RS01895 0.55 +0.5 403,260 + ABZR87_RS01895 0.88 +0.8 403,260 + ABZR87_RS01895 0.88 +1.1 403,260 + ABZR87_RS01895 0.88 +0.5 403,261 - ABZR87_RS01895 0.88 -0.4 403,261 - ABZR87_RS01895 0.88 -0.2 403,261 - ABZR87_RS01895 0.88 +0.3 403,368 + -1.0 403,368 + +0.2 403,369 - -0.5 403,369 - -2.5 403,369 - +0.4 403,435 + +0.9 403,435 + -0.3 403,435 + -0.2 403,435 + -0.1 403,435 + -0.4 403,435 + +0.9 403,435 + -0.4 403,435 + -0.1 403,435 + -0.6 403,436 - -2.6 403,436 - -0.4 403,436 - -0.3 403,966 + -0.7 403,967 - +0.2 403,997 - -1.4
Or see this region's nucleotide sequence