Experiment: soil sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01840 and ABZR87_RS01845 are separated by 259 nucleotides ABZR87_RS01845 and ABZR87_RS01850 are separated by 44 nucleotides
ABZR87_RS01840: ABZR87_RS01840 - HlyC/CorC family transporter, at 389,538 to 390,812
_RS01840
ABZR87_RS01845: ABZR87_RS01845 - type IV-A pilus assembly ATPase PilB, at 391,072 to 392,799
_RS01845
ABZR87_RS01850: ABZR87_RS01850 - type II secretion system F family protein, at 392,844 to 394,109
_RS01850
Position (kb) 391
392
393 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 390.243 kb on + strand, within ABZR87_RS01840 at 390.243 kb on + strand, within ABZR87_RS01840 at 390.243 kb on + strand, within ABZR87_RS01840 at 390.243 kb on + strand, within ABZR87_RS01840 at 390.244 kb on - strand, within ABZR87_RS01840 at 390.244 kb on - strand, within ABZR87_RS01840 at 390.244 kb on - strand, within ABZR87_RS01840 at 390.244 kb on - strand, within ABZR87_RS01840 at 390.341 kb on + strand, within ABZR87_RS01840 at 390.342 kb on - strand, within ABZR87_RS01840 at 390.342 kb on - strand, within ABZR87_RS01840 at 390.342 kb on - strand, within ABZR87_RS01840 at 390.342 kb on - strand, within ABZR87_RS01840 at 390.342 kb on - strand, within ABZR87_RS01840 at 390.379 kb on - strand, within ABZR87_RS01840 at 390.379 kb on - strand, within ABZR87_RS01840 at 390.379 kb on - strand, within ABZR87_RS01840 at 390.415 kb on + strand, within ABZR87_RS01840 at 390.415 kb on + strand, within ABZR87_RS01840 at 390.415 kb on + strand, within ABZR87_RS01840 at 390.415 kb on + strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.420 kb on + strand, within ABZR87_RS01840 at 390.420 kb on + strand, within ABZR87_RS01840 at 390.421 kb on - strand, within ABZR87_RS01840 at 390.421 kb on - strand, within ABZR87_RS01840 at 390.465 kb on + strand, within ABZR87_RS01840 at 390.465 kb on + strand, within ABZR87_RS01840 at 390.466 kb on - strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.580 kb on - strand, within ABZR87_RS01840 at 390.580 kb on - strand, within ABZR87_RS01840 at 390.580 kb on - strand, within ABZR87_RS01840 at 390.580 kb on - strand, within ABZR87_RS01840 at 390.740 kb on + strand at 390.775 kb on + strand at 390.806 kb on + strand at 390.806 kb on + strand at 390.807 kb on - strand at 390.807 kb on - strand at 390.807 kb on - strand at 390.807 kb on - strand at 390.807 kb on - strand at 390.807 kb on - strand at 390.807 kb on - strand at 390.807 kb on - strand at 390.861 kb on - strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 391.091 kb on + strand at 391.092 kb on - strand at 391.122 kb on - strand at 391.122 kb on - strand at 391.234 kb on + strand at 391.234 kb on + strand at 391.235 kb on - strand at 391.235 kb on - strand at 391.264 kb on + strand, within ABZR87_RS01845 at 391.264 kb on + strand, within ABZR87_RS01845 at 391.265 kb on - strand, within ABZR87_RS01845 at 391.265 kb on - strand, within ABZR87_RS01845 at 391.265 kb on - strand, within ABZR87_RS01845 at 391.540 kb on + strand, within ABZR87_RS01845 at 391.541 kb on - strand, within ABZR87_RS01845 at 391.541 kb on - strand, within ABZR87_RS01845 at 391.629 kb on + strand, within ABZR87_RS01845 at 391.687 kb on + strand, within ABZR87_RS01845 at 391.687 kb on + strand, within ABZR87_RS01845 at 392.101 kb on + strand, within ABZR87_RS01845 at 392.101 kb on + strand, within ABZR87_RS01845 at 392.101 kb on + strand, within ABZR87_RS01845 at 392.101 kb on + strand, within ABZR87_RS01845 at 392.102 kb on - strand, within ABZR87_RS01845 at 392.102 kb on - strand, within ABZR87_RS01845 at 392.102 kb on - strand, within ABZR87_RS01845 at 392.102 kb on - strand, within ABZR87_RS01845 at 392.304 kb on + strand, within ABZR87_RS01845 at 392.304 kb on + strand, within ABZR87_RS01845 at 392.305 kb on - strand, within ABZR87_RS01845 at 392.560 kb on + strand, within ABZR87_RS01845 at 392.560 kb on + strand, within ABZR87_RS01845 at 392.561 kb on - strand, within ABZR87_RS01845 at 392.561 kb on - strand, within ABZR87_RS01845 at 392.599 kb on + strand, within ABZR87_RS01845 at 392.599 kb on + strand, within ABZR87_RS01845 at 392.600 kb on - strand, within ABZR87_RS01845 at 392.600 kb on - strand, within ABZR87_RS01845 at 392.600 kb on - strand, within ABZR87_RS01845 at 392.620 kb on + strand, within ABZR87_RS01845 at 392.620 kb on + strand, within ABZR87_RS01845 at 392.620 kb on + strand, within ABZR87_RS01845 at 392.620 kb on + strand, within ABZR87_RS01845 at 392.620 kb on + strand, within ABZR87_RS01845 at 392.621 kb on - strand, within ABZR87_RS01845 at 392.621 kb on - strand, within ABZR87_RS01845 at 392.621 kb on - strand, within ABZR87_RS01845 at 392.621 kb on - strand, within ABZR87_RS01845 at 392.621 kb on - strand, within ABZR87_RS01845 at 392.621 kb on - strand, within ABZR87_RS01845 at 392.797 kb on + strand at 392.798 kb on - strand at 392.832 kb on + strand at 392.833 kb on - strand at 392.833 kb on - strand at 392.925 kb on + strand at 392.925 kb on + strand at 392.925 kb on + strand at 392.925 kb on + strand at 392.925 kb on + strand at 392.926 kb on - strand at 392.926 kb on - strand at 392.926 kb on - strand at 392.926 kb on - strand at 392.926 kb on - strand at 393.099 kb on + strand, within ABZR87_RS01850 at 393.099 kb on + strand, within ABZR87_RS01850 at 393.099 kb on + strand, within ABZR87_RS01850 at 393.099 kb on + strand, within ABZR87_RS01850 at 393.099 kb on + strand, within ABZR87_RS01850 at 393.099 kb on + strand, within ABZR87_RS01850 at 393.099 kb on + strand, within ABZR87_RS01850 at 393.099 kb on + strand, within ABZR87_RS01850 at 393.099 kb on + strand, within ABZR87_RS01850 at 393.100 kb on - strand, within ABZR87_RS01850 at 393.100 kb on - strand, within ABZR87_RS01850 at 393.273 kb on + strand, within ABZR87_RS01850 at 393.288 kb on + strand, within ABZR87_RS01850 at 393.288 kb on + strand, within ABZR87_RS01850 at 393.288 kb on + strand, within ABZR87_RS01850 at 393.288 kb on + strand, within ABZR87_RS01850 at 393.288 kb on + strand, within ABZR87_RS01850 at 393.289 kb on - strand, within ABZR87_RS01850 at 393.289 kb on - strand, within ABZR87_RS01850 at 393.289 kb on - strand, within ABZR87_RS01850 at 393.357 kb on + strand, within ABZR87_RS01850 at 393.357 kb on + strand, within ABZR87_RS01850 at 393.357 kb on + strand, within ABZR87_RS01850 at 393.358 kb on - strand, within ABZR87_RS01850 at 393.358 kb on - strand, within ABZR87_RS01850 at 393.358 kb on - strand, within ABZR87_RS01850 at 393.358 kb on - strand, within ABZR87_RS01850 at 393.408 kb on + strand, within ABZR87_RS01850 at 393.409 kb on - strand, within ABZR87_RS01850 at 393.409 kb on - strand, within ABZR87_RS01850 at 393.480 kb on - strand, within ABZR87_RS01850 at 393.480 kb on - strand, within ABZR87_RS01850 at 393.480 kb on - strand, within ABZR87_RS01850 at 393.567 kb on + strand, within ABZR87_RS01850 at 393.567 kb on + strand, within ABZR87_RS01850 at 393.567 kb on + strand, within ABZR87_RS01850 at 393.567 kb on + strand, within ABZR87_RS01850 at 393.567 kb on + strand, within ABZR87_RS01850 at 393.567 kb on + strand, within ABZR87_RS01850 at 393.567 kb on + strand, within ABZR87_RS01850 at 393.567 kb on + strand, within ABZR87_RS01850 at 393.568 kb on - strand, within ABZR87_RS01850 at 393.568 kb on - strand, within ABZR87_RS01850 at 393.568 kb on - strand, within ABZR87_RS01850 at 393.568 kb on - strand, within ABZR87_RS01850 at 393.568 kb on - strand, within ABZR87_RS01850 at 393.722 kb on + strand, within ABZR87_RS01850 at 393.722 kb on + strand, within ABZR87_RS01850 at 393.723 kb on - strand, within ABZR87_RS01850 at 393.723 kb on - strand, within ABZR87_RS01850 at 393.795 kb on - strand, within ABZR87_RS01850
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 6; outgrowth in LB remove 390,243 + ABZR87_RS01840 0.55 -0.4 390,243 + ABZR87_RS01840 0.55 -0.5 390,243 + ABZR87_RS01840 0.55 -2.2 390,243 + ABZR87_RS01840 0.55 -0.2 390,244 - ABZR87_RS01840 0.55 +0.3 390,244 - ABZR87_RS01840 0.55 +0.5 390,244 - ABZR87_RS01840 0.55 -1.3 390,244 - ABZR87_RS01840 0.55 +0.7 390,341 + ABZR87_RS01840 0.63 +0.3 390,342 - ABZR87_RS01840 0.63 +0.6 390,342 - ABZR87_RS01840 0.63 +0.8 390,342 - ABZR87_RS01840 0.63 +0.2 390,342 - ABZR87_RS01840 0.63 -1.0 390,342 - ABZR87_RS01840 0.63 -0.7 390,379 - ABZR87_RS01840 0.66 -0.6 390,379 - ABZR87_RS01840 0.66 -0.2 390,379 - ABZR87_RS01840 0.66 +0.1 390,415 + ABZR87_RS01840 0.69 -1.4 390,415 + ABZR87_RS01840 0.69 -0.6 390,415 + ABZR87_RS01840 0.69 +0.1 390,415 + ABZR87_RS01840 0.69 +1.1 390,416 - ABZR87_RS01840 0.69 -0.9 390,416 - ABZR87_RS01840 0.69 -0.3 390,416 - ABZR87_RS01840 0.69 +0.2 390,416 - ABZR87_RS01840 0.69 -0.8 390,416 - ABZR87_RS01840 0.69 -0.3 390,416 - ABZR87_RS01840 0.69 -0.5 390,416 - ABZR87_RS01840 0.69 +0.9 390,416 - ABZR87_RS01840 0.69 -0.9 390,416 - ABZR87_RS01840 0.69 -0.1 390,420 + ABZR87_RS01840 0.69 -0.1 390,420 + ABZR87_RS01840 0.69 +0.1 390,421 - ABZR87_RS01840 0.69 -0.5 390,421 - ABZR87_RS01840 0.69 +0.1 390,465 + ABZR87_RS01840 0.73 +1.5 390,465 + ABZR87_RS01840 0.73 -1.1 390,466 - ABZR87_RS01840 0.73 -1.1 390,579 + ABZR87_RS01840 0.82 +0.6 390,579 + ABZR87_RS01840 0.82 +0.0 390,579 + ABZR87_RS01840 0.82 -0.7 390,579 + ABZR87_RS01840 0.82 +0.4 390,579 + ABZR87_RS01840 0.82 -1.7 390,579 + ABZR87_RS01840 0.82 -0.7 390,579 + ABZR87_RS01840 0.82 -0.1 390,579 + ABZR87_RS01840 0.82 -0.1 390,579 + ABZR87_RS01840 0.82 +0.9 390,579 + ABZR87_RS01840 0.82 -0.5 390,580 - ABZR87_RS01840 0.82 -0.4 390,580 - ABZR87_RS01840 0.82 -0.6 390,580 - ABZR87_RS01840 0.82 -1.2 390,580 - ABZR87_RS01840 0.82 -0.4 390,740 + -0.3 390,775 + -0.1 390,806 + -0.7 390,806 + +0.2 390,807 - +1.2 390,807 - +0.1 390,807 - -0.4 390,807 - -0.4 390,807 - +0.6 390,807 - -0.6 390,807 - -0.6 390,807 - +0.1 390,861 - -0.3 390,979 + +0.3 390,979 + -0.2 390,979 + -0.0 390,979 + +0.4 390,979 + +0.2 390,979 + +0.8 390,979 + +2.0 390,979 + -0.3 390,979 + -3.5 390,979 + -1.7 390,979 + -0.3 390,979 + +0.8 390,979 + -0.1 390,979 + +0.1 390,979 + -0.2 390,979 + +1.4 390,980 - +0.1 390,980 - -0.7 390,980 - -1.1 390,980 - -0.9 390,980 - +0.3 390,980 - -1.2 390,980 - +0.3 390,980 - +0.6 390,980 - -0.9 390,980 - -1.3 390,980 - -0.3 390,980 - -1.3 390,980 - -0.0 390,980 - -0.7 390,980 - -2.0 391,091 + +0.7 391,092 - -0.6 391,122 - -0.6 391,122 - -0.2 391,234 + -0.1 391,234 + +0.5 391,235 - -0.8 391,235 - +0.3 391,264 + ABZR87_RS01845 0.11 +0.8 391,264 + ABZR87_RS01845 0.11 +0.2 391,265 - ABZR87_RS01845 0.11 +0.2 391,265 - ABZR87_RS01845 0.11 -0.7 391,265 - ABZR87_RS01845 0.11 -1.1 391,540 + ABZR87_RS01845 0.27 -1.2 391,541 - ABZR87_RS01845 0.27 -1.7 391,541 - ABZR87_RS01845 0.27 -0.9 391,629 + ABZR87_RS01845 0.32 -0.3 391,687 + ABZR87_RS01845 0.36 -1.6 391,687 + ABZR87_RS01845 0.36 +0.6 392,101 + ABZR87_RS01845 0.60 -0.2 392,101 + ABZR87_RS01845 0.60 -0.7 392,101 + ABZR87_RS01845 0.60 +0.3 392,101 + ABZR87_RS01845 0.60 -0.8 392,102 - ABZR87_RS01845 0.60 +0.1 392,102 - ABZR87_RS01845 0.60 -0.3 392,102 - ABZR87_RS01845 0.60 -0.4 392,102 - ABZR87_RS01845 0.60 -0.5 392,304 + ABZR87_RS01845 0.71 -0.4 392,304 + ABZR87_RS01845 0.71 -0.7 392,305 - ABZR87_RS01845 0.71 -1.0 392,560 + ABZR87_RS01845 0.86 -0.2 392,560 + ABZR87_RS01845 0.86 -0.2 392,561 - ABZR87_RS01845 0.86 -0.0 392,561 - ABZR87_RS01845 0.86 -1.0 392,599 + ABZR87_RS01845 0.88 +2.3 392,599 + ABZR87_RS01845 0.88 -0.6 392,600 - ABZR87_RS01845 0.88 -0.2 392,600 - ABZR87_RS01845 0.88 -0.3 392,600 - ABZR87_RS01845 0.88 -0.3 392,620 + ABZR87_RS01845 0.90 +0.6 392,620 + ABZR87_RS01845 0.90 +0.4 392,620 + ABZR87_RS01845 0.90 -0.6 392,620 + ABZR87_RS01845 0.90 -0.3 392,620 + ABZR87_RS01845 0.90 -0.8 392,621 - ABZR87_RS01845 0.90 -0.5 392,621 - ABZR87_RS01845 0.90 -1.3 392,621 - ABZR87_RS01845 0.90 -1.0 392,621 - ABZR87_RS01845 0.90 +0.2 392,621 - ABZR87_RS01845 0.90 -1.3 392,621 - ABZR87_RS01845 0.90 +1.7 392,797 + -0.0 392,798 - +0.2 392,832 + +0.8 392,833 - +1.7 392,833 - -0.0 392,925 + -0.5 392,925 + +1.5 392,925 + -0.3 392,925 + -0.6 392,925 + +0.1 392,926 - -1.0 392,926 - +0.7 392,926 - -1.9 392,926 - -1.3 392,926 - +1.0 393,099 + ABZR87_RS01850 0.20 +0.4 393,099 + ABZR87_RS01850 0.20 -0.4 393,099 + ABZR87_RS01850 0.20 -1.9 393,099 + ABZR87_RS01850 0.20 +0.9 393,099 + ABZR87_RS01850 0.20 -1.0 393,099 + ABZR87_RS01850 0.20 -0.0 393,099 + ABZR87_RS01850 0.20 +0.1 393,099 + ABZR87_RS01850 0.20 -1.0 393,099 + ABZR87_RS01850 0.20 +0.4 393,100 - ABZR87_RS01850 0.20 +0.5 393,100 - ABZR87_RS01850 0.20 -2.1 393,273 + ABZR87_RS01850 0.34 -0.3 393,288 + ABZR87_RS01850 0.35 +0.3 393,288 + ABZR87_RS01850 0.35 -0.8 393,288 + ABZR87_RS01850 0.35 -0.4 393,288 + ABZR87_RS01850 0.35 -0.2 393,288 + ABZR87_RS01850 0.35 -0.4 393,289 - ABZR87_RS01850 0.35 -0.2 393,289 - ABZR87_RS01850 0.35 -1.0 393,289 - ABZR87_RS01850 0.35 -0.4 393,357 + ABZR87_RS01850 0.41 -0.7 393,357 + ABZR87_RS01850 0.41 -2.1 393,357 + ABZR87_RS01850 0.41 -0.5 393,358 - ABZR87_RS01850 0.41 +1.3 393,358 - ABZR87_RS01850 0.41 -1.1 393,358 - ABZR87_RS01850 0.41 -0.6 393,358 - ABZR87_RS01850 0.41 -0.2 393,408 + ABZR87_RS01850 0.45 +0.6 393,409 - ABZR87_RS01850 0.45 -0.3 393,409 - ABZR87_RS01850 0.45 -0.6 393,480 - ABZR87_RS01850 0.50 -0.6 393,480 - ABZR87_RS01850 0.50 -2.5 393,480 - ABZR87_RS01850 0.50 +0.2 393,567 + ABZR87_RS01850 0.57 -0.4 393,567 + ABZR87_RS01850 0.57 -0.5 393,567 + ABZR87_RS01850 0.57 -1.7 393,567 + ABZR87_RS01850 0.57 -1.3 393,567 + ABZR87_RS01850 0.57 +0.9 393,567 + ABZR87_RS01850 0.57 +0.7 393,567 + ABZR87_RS01850 0.57 -1.9 393,567 + ABZR87_RS01850 0.57 -0.9 393,568 - ABZR87_RS01850 0.57 -2.0 393,568 - ABZR87_RS01850 0.57 -0.2 393,568 - ABZR87_RS01850 0.57 +1.0 393,568 - ABZR87_RS01850 0.57 -1.9 393,568 - ABZR87_RS01850 0.57 +0.1 393,722 + ABZR87_RS01850 0.69 -0.9 393,722 + ABZR87_RS01850 0.69 +0.5 393,723 - ABZR87_RS01850 0.69 -1.8 393,723 - ABZR87_RS01850 0.69 -0.5 393,795 - ABZR87_RS01850 0.75 -1.7
Or see this region's nucleotide sequence