Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01375

Experiment: soil sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01370 and ABZR87_RS01375 are separated by 7 nucleotidesABZR87_RS01375 and ABZR87_RS01380 are separated by 82 nucleotides ABZR87_RS01370: ABZR87_RS01370 - ATP-binding protein, at 286,283 to 287,611 _RS01370 ABZR87_RS01375: ABZR87_RS01375 - two-component system hybrid sensor histidine kinase/response regulator PhcR, at 287,619 to 288,725 _RS01375 ABZR87_RS01380: ABZR87_RS01380 - response regulator, at 288,808 to 289,815 _RS01380 Position (kb) 287 288 289Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8 9at 286.625 kb on + strand, within ABZR87_RS01370at 286.625 kb on + strand, within ABZR87_RS01370at 286.626 kb on - strand, within ABZR87_RS01370at 286.626 kb on - strand, within ABZR87_RS01370at 286.688 kb on + strand, within ABZR87_RS01370at 286.688 kb on + strand, within ABZR87_RS01370at 286.688 kb on + strand, within ABZR87_RS01370at 286.688 kb on + strand, within ABZR87_RS01370at 286.688 kb on + strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.799 kb on + strand, within ABZR87_RS01370at 286.799 kb on + strand, within ABZR87_RS01370at 286.799 kb on + strand, within ABZR87_RS01370at 286.799 kb on + strand, within ABZR87_RS01370at 286.805 kb on + strand, within ABZR87_RS01370at 286.805 kb on + strand, within ABZR87_RS01370at 286.805 kb on + strand, within ABZR87_RS01370at 286.805 kb on + strand, within ABZR87_RS01370at 286.806 kb on - strand, within ABZR87_RS01370at 286.806 kb on - strand, within ABZR87_RS01370at 286.806 kb on - strand, within ABZR87_RS01370at 286.806 kb on - strand, within ABZR87_RS01370at 286.806 kb on - strand, within ABZR87_RS01370at 286.806 kb on - strand, within ABZR87_RS01370at 286.806 kb on - strand, within ABZR87_RS01370at 287.132 kb on + strand, within ABZR87_RS01370at 287.133 kb on - strand, within ABZR87_RS01370at 287.295 kb on + strand, within ABZR87_RS01370at 287.296 kb on - strand, within ABZR87_RS01370at 287.517 kb on - strandat 287.652 kb on + strandat 287.653 kb on - strandat 287.653 kb on - strandat 287.709 kb on + strandat 287.883 kb on + strand, within ABZR87_RS01375at 287.883 kb on + strand, within ABZR87_RS01375at 287.884 kb on - strand, within ABZR87_RS01375at 287.884 kb on - strand, within ABZR87_RS01375at 287.884 kb on - strand, within ABZR87_RS01375at 287.884 kb on - strand, within ABZR87_RS01375at 287.952 kb on + strand, within ABZR87_RS01375at 287.953 kb on - strand, within ABZR87_RS01375at 288.205 kb on - strand, within ABZR87_RS01375at 288.205 kb on - strand, within ABZR87_RS01375at 288.253 kb on - strand, within ABZR87_RS01375at 288.253 kb on - strand, within ABZR87_RS01375at 288.321 kb on + strand, within ABZR87_RS01375at 288.321 kb on + strand, within ABZR87_RS01375at 288.321 kb on + strand, within ABZR87_RS01375at 288.321 kb on + strand, within ABZR87_RS01375at 288.322 kb on - strand, within ABZR87_RS01375at 288.322 kb on - strand, within ABZR87_RS01375at 288.357 kb on + strand, within ABZR87_RS01375at 288.741 kb on + strandat 288.741 kb on + strandat 288.742 kb on - strandat 288.742 kb on - strandat 288.742 kb on - strandat 288.793 kb on + strandat 288.793 kb on + strandat 288.794 kb on - strandat 288.844 kb on + strandat 288.844 kb on + strandat 288.844 kb on + strandat 288.845 kb on - strandat 288.874 kb on + strandat 288.874 kb on + strandat 288.874 kb on + strandat 288.874 kb on + strandat 288.875 kb on - strandat 289.028 kb on - strand, within ABZR87_RS01380at 289.076 kb on - strand, within ABZR87_RS01380at 289.076 kb on - strand, within ABZR87_RS01380at 289.129 kb on + strand, within ABZR87_RS01380at 289.129 kb on + strand, within ABZR87_RS01380at 289.129 kb on + strand, within ABZR87_RS01380at 289.130 kb on - strand, within ABZR87_RS01380at 289.130 kb on - strand, within ABZR87_RS01380at 289.130 kb on - strand, within ABZR87_RS01380at 289.131 kb on + strand, within ABZR87_RS01380at 289.132 kb on - strand, within ABZR87_RS01380at 289.132 kb on - strand, within ABZR87_RS01380at 289.132 kb on - strand, within ABZR87_RS01380at 289.132 kb on - strand, within ABZR87_RS01380at 289.132 kb on - strand, within ABZR87_RS01380at 289.132 kb on - strand, within ABZR87_RS01380at 289.132 kb on - strand, within ABZR87_RS01380at 289.292 kb on - strand, within ABZR87_RS01380at 289.292 kb on - strand, within ABZR87_RS01380at 289.337 kb on - strand, within ABZR87_RS01380at 289.337 kb on - strand, within ABZR87_RS01380at 289.337 kb on - strand, within ABZR87_RS01380at 289.403 kb on - strand, within ABZR87_RS01380at 289.403 kb on - strand, within ABZR87_RS01380at 289.468 kb on + strand, within ABZR87_RS01380at 289.469 kb on - strand, within ABZR87_RS01380at 289.469 kb on - strand, within ABZR87_RS01380at 289.469 kb on - strand, within ABZR87_RS01380at 289.469 kb on - strand, within ABZR87_RS01380

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 6; outgrowth in LB
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286,625 + ABZR87_RS01370 0.26 +1.1
286,625 + ABZR87_RS01370 0.26 +4.6
286,626 - ABZR87_RS01370 0.26 +7.2
286,626 - ABZR87_RS01370 0.26 +6.9
286,688 + ABZR87_RS01370 0.30 +2.8
286,688 + ABZR87_RS01370 0.30 +1.6
286,688 + ABZR87_RS01370 0.30 +0.4
286,688 + ABZR87_RS01370 0.30 +0.9
286,688 + ABZR87_RS01370 0.30 +1.3
286,689 - ABZR87_RS01370 0.31 +7.2
286,689 - ABZR87_RS01370 0.31 +7.1
286,689 - ABZR87_RS01370 0.31 +6.3
286,689 - ABZR87_RS01370 0.31 +7.3
286,689 - ABZR87_RS01370 0.31 +7.4
286,689 - ABZR87_RS01370 0.31 +6.3
286,689 - ABZR87_RS01370 0.31 +7.1
286,689 - ABZR87_RS01370 0.31 +6.6
286,689 - ABZR87_RS01370 0.31 +7.5
286,689 - ABZR87_RS01370 0.31 +7.2
286,799 + ABZR87_RS01370 0.39 -1.1
286,799 + ABZR87_RS01370 0.39 -1.2
286,799 + ABZR87_RS01370 0.39 -0.1
286,799 + ABZR87_RS01370 0.39 -0.1
286,805 + ABZR87_RS01370 0.39 -0.1
286,805 + ABZR87_RS01370 0.39 +0.4
286,805 + ABZR87_RS01370 0.39 +0.5
286,805 + ABZR87_RS01370 0.39 +0.5
286,806 - ABZR87_RS01370 0.39 +7.0
286,806 - ABZR87_RS01370 0.39 +8.2
286,806 - ABZR87_RS01370 0.39 +7.8
286,806 - ABZR87_RS01370 0.39 +7.5
286,806 - ABZR87_RS01370 0.39 +8.0
286,806 - ABZR87_RS01370 0.39 +7.3
286,806 - ABZR87_RS01370 0.39 +7.7
287,132 + ABZR87_RS01370 0.64 +0.2
287,133 - ABZR87_RS01370 0.64 +5.8
287,295 + ABZR87_RS01370 0.76 -0.5
287,296 - ABZR87_RS01370 0.76 +1.2
287,517 - +2.4
287,652 + +8.2
287,653 - +8.0
287,653 - +7.6
287,709 + +8.0
287,883 + ABZR87_RS01375 0.24 +7.5
287,883 + ABZR87_RS01375 0.24 +8.1
287,884 - ABZR87_RS01375 0.24 +8.0
287,884 - ABZR87_RS01375 0.24 +8.2
287,884 - ABZR87_RS01375 0.24 +7.8
287,884 - ABZR87_RS01375 0.24 +7.8
287,952 + ABZR87_RS01375 0.30 +8.4
287,953 - ABZR87_RS01375 0.30 +7.2
288,205 - ABZR87_RS01375 0.53 +8.3
288,205 - ABZR87_RS01375 0.53 +8.0
288,253 - ABZR87_RS01375 0.57 +8.3
288,253 - ABZR87_RS01375 0.57 +7.6
288,321 + ABZR87_RS01375 0.63 +7.6
288,321 + ABZR87_RS01375 0.63 +8.1
288,321 + ABZR87_RS01375 0.63 +8.1
288,321 + ABZR87_RS01375 0.63 +9.0
288,322 - ABZR87_RS01375 0.64 +8.6
288,322 - ABZR87_RS01375 0.64 +7.8
288,357 + ABZR87_RS01375 0.67 +7.5
288,741 + -0.0
288,741 + +1.0
288,742 - +0.1
288,742 - -0.4
288,742 - -0.5
288,793 + -0.2
288,793 + +0.3
288,794 - +0.1
288,844 + +0.9
288,844 + -1.1
288,844 + +0.9
288,845 - +0.4
288,874 + -0.6
288,874 + -0.5
288,874 + -0.0
288,874 + -0.4
288,875 - -0.2
289,028 - ABZR87_RS01380 0.22 +0.5
289,076 - ABZR87_RS01380 0.27 -0.7
289,076 - ABZR87_RS01380 0.27 +0.5
289,129 + ABZR87_RS01380 0.32 +0.5
289,129 + ABZR87_RS01380 0.32 -0.5
289,129 + ABZR87_RS01380 0.32 +0.7
289,130 - ABZR87_RS01380 0.32 -0.6
289,130 - ABZR87_RS01380 0.32 +0.7
289,130 - ABZR87_RS01380 0.32 -0.7
289,131 + ABZR87_RS01380 0.32 -0.9
289,132 - ABZR87_RS01380 0.32 +0.6
289,132 - ABZR87_RS01380 0.32 -1.1
289,132 - ABZR87_RS01380 0.32 -0.5
289,132 - ABZR87_RS01380 0.32 +0.6
289,132 - ABZR87_RS01380 0.32 -0.1
289,132 - ABZR87_RS01380 0.32 +0.2
289,132 - ABZR87_RS01380 0.32 -0.3
289,292 - ABZR87_RS01380 0.48 -0.3
289,292 - ABZR87_RS01380 0.48 +0.7
289,337 - ABZR87_RS01380 0.52 -0.7
289,337 - ABZR87_RS01380 0.52 -0.9
289,337 - ABZR87_RS01380 0.52 +0.8
289,403 - ABZR87_RS01380 0.59 +1.6
289,403 - ABZR87_RS01380 0.59 +0.8
289,468 + ABZR87_RS01380 0.65 +0.5
289,469 - ABZR87_RS01380 0.66 +0.4
289,469 - ABZR87_RS01380 0.66 -0.5
289,469 - ABZR87_RS01380 0.66 -0.4
289,469 - ABZR87_RS01380 0.66 -0.7

Or see this region's nucleotide sequence