Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01220

Experiment: soil sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01215 and ABZR87_RS01220 are separated by 66 nucleotidesABZR87_RS01220 and ABZR87_RS01225 are separated by 122 nucleotidesABZR87_RS01225 and ABZR87_RS01230 are separated by 30 nucleotides ABZR87_RS01215: ABZR87_RS01215 - PilT/PilU family type 4a pilus ATPase, at 251,076 to 252,215 _RS01215 ABZR87_RS01220: ABZR87_RS01220 - type IV pilus twitching motility protein PilT, at 252,282 to 253,325 _RS01220 ABZR87_RS01225: ABZR87_RS01225 - YggS family pyridoxal phosphate-dependent enzyme, at 253,448 to 254,164 _RS01225 ABZR87_RS01230: ABZR87_RS01230 - pyrroline-5-carboxylate reductase, at 254,195 to 255,019 _RS01230 Position (kb) 252 253 254Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 251.542 kb on + strand, within ABZR87_RS01215at 251.542 kb on + strand, within ABZR87_RS01215at 251.542 kb on + strand, within ABZR87_RS01215at 251.542 kb on + strand, within ABZR87_RS01215at 251.554 kb on + strand, within ABZR87_RS01215at 251.555 kb on - strand, within ABZR87_RS01215at 251.701 kb on + strand, within ABZR87_RS01215at 251.701 kb on + strand, within ABZR87_RS01215at 251.701 kb on + strand, within ABZR87_RS01215at 251.702 kb on - strand, within ABZR87_RS01215at 251.702 kb on - strand, within ABZR87_RS01215at 251.702 kb on - strand, within ABZR87_RS01215at 251.702 kb on - strand, within ABZR87_RS01215at 251.702 kb on - strand, within ABZR87_RS01215at 251.702 kb on - strand, within ABZR87_RS01215at 251.737 kb on + strand, within ABZR87_RS01215at 252.187 kb on + strandat 252.187 kb on + strandat 252.187 kb on + strandat 252.187 kb on + strandat 252.187 kb on + strandat 252.187 kb on + strandat 252.187 kb on + strandat 252.188 kb on - strandat 252.188 kb on - strandat 252.188 kb on - strandat 252.188 kb on - strandat 252.188 kb on - strandat 252.188 kb on - strandat 252.188 kb on - strandat 252.256 kb on + strandat 252.256 kb on + strandat 252.256 kb on + strandat 252.257 kb on - strandat 252.257 kb on - strandat 252.268 kb on + strandat 252.269 kb on - strandat 252.269 kb on - strandat 252.280 kb on + strandat 252.280 kb on + strandat 252.331 kb on + strandat 252.331 kb on + strandat 252.331 kb on + strandat 252.331 kb on + strandat 252.332 kb on - strandat 252.332 kb on - strandat 252.332 kb on - strandat 252.418 kb on + strand, within ABZR87_RS01220at 252.418 kb on + strand, within ABZR87_RS01220at 252.418 kb on + strand, within ABZR87_RS01220at 252.418 kb on + strand, within ABZR87_RS01220at 252.419 kb on - strand, within ABZR87_RS01220at 252.782 kb on + strand, within ABZR87_RS01220at 252.783 kb on - strand, within ABZR87_RS01220at 252.783 kb on - strand, within ABZR87_RS01220at 253.138 kb on + strand, within ABZR87_RS01220at 253.139 kb on - strand, within ABZR87_RS01220at 253.171 kb on + strand, within ABZR87_RS01220at 253.171 kb on + strand, within ABZR87_RS01220at 253.171 kb on + strand, within ABZR87_RS01220at 253.171 kb on + strand, within ABZR87_RS01220at 253.171 kb on + strand, within ABZR87_RS01220at 253.172 kb on - strand, within ABZR87_RS01220at 253.172 kb on - strand, within ABZR87_RS01220at 253.172 kb on - strand, within ABZR87_RS01220at 253.328 kb on + strandat 253.328 kb on + strandat 253.328 kb on + strandat 253.329 kb on - strandat 253.329 kb on - strandat 253.329 kb on - strandat 253.329 kb on - strandat 253.329 kb on - strandat 253.329 kb on - strandat 253.330 kb on + strandat 253.330 kb on + strandat 253.330 kb on + strandat 253.331 kb on - strandat 253.331 kb on - strandat 253.331 kb on - strandat 253.331 kb on - strandat 253.349 kb on + strandat 253.350 kb on - strandat 253.350 kb on - strandat 253.423 kb on + strandat 253.423 kb on + strandat 253.423 kb on + strandat 253.424 kb on - strandat 253.424 kb on - strandat 253.424 kb on - strandat 253.424 kb on - strandat 253.430 kb on - strandat 253.447 kb on + strandat 253.447 kb on + strandat 253.447 kb on + strandat 253.447 kb on + strandat 253.448 kb on - strandat 253.448 kb on - strandat 253.448 kb on - strandat 253.448 kb on - strandat 253.455 kb on + strandat 253.456 kb on - strandat 253.619 kb on + strand, within ABZR87_RS01225at 253.619 kb on + strand, within ABZR87_RS01225at 253.620 kb on - strand, within ABZR87_RS01225at 253.620 kb on - strand, within ABZR87_RS01225at 254.053 kb on + strand, within ABZR87_RS01225at 254.053 kb on + strand, within ABZR87_RS01225

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 6; outgrowth in LB
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251,542 + ABZR87_RS01215 0.41 +4.3
251,542 + ABZR87_RS01215 0.41 +4.3
251,542 + ABZR87_RS01215 0.41 +3.0
251,542 + ABZR87_RS01215 0.41 +3.2
251,554 + ABZR87_RS01215 0.42 +3.1
251,555 - ABZR87_RS01215 0.42 +2.8
251,701 + ABZR87_RS01215 0.55 +3.4
251,701 + ABZR87_RS01215 0.55 +3.7
251,701 + ABZR87_RS01215 0.55 +3.9
251,702 - ABZR87_RS01215 0.55 +3.7
251,702 - ABZR87_RS01215 0.55 +4.2
251,702 - ABZR87_RS01215 0.55 +3.5
251,702 - ABZR87_RS01215 0.55 +4.4
251,702 - ABZR87_RS01215 0.55 +4.3
251,702 - ABZR87_RS01215 0.55 +4.1
251,737 + ABZR87_RS01215 0.58 +3.7
252,187 + +4.4
252,187 + +4.6
252,187 + +3.9
252,187 + +3.8
252,187 + +3.4
252,187 + +1.6
252,187 + +5.1
252,188 - +3.7
252,188 - +4.2
252,188 - +3.6
252,188 - +3.8
252,188 - +4.0
252,188 - +0.6
252,188 - +3.8
252,256 + +0.7
252,256 + -0.0
252,256 + +0.1
252,257 - -0.3
252,257 - +0.3
252,268 + +0.4
252,269 - -1.0
252,269 - -0.5
252,280 + -0.5
252,280 + -1.9
252,331 + +0.3
252,331 + +0.6
252,331 + +2.5
252,331 + +1.6
252,332 - +0.9
252,332 - -0.8
252,332 - -0.3
252,418 + ABZR87_RS01220 0.13 +1.8
252,418 + ABZR87_RS01220 0.13 +1.1
252,418 + ABZR87_RS01220 0.13 +0.8
252,418 + ABZR87_RS01220 0.13 +0.3
252,419 - ABZR87_RS01220 0.13 +1.1
252,782 + ABZR87_RS01220 0.48 +1.5
252,783 - ABZR87_RS01220 0.48 -0.5
252,783 - ABZR87_RS01220 0.48 +1.9
253,138 + ABZR87_RS01220 0.82 +1.5
253,139 - ABZR87_RS01220 0.82 +1.1
253,171 + ABZR87_RS01220 0.85 +1.1
253,171 + ABZR87_RS01220 0.85 +1.4
253,171 + ABZR87_RS01220 0.85 +0.3
253,171 + ABZR87_RS01220 0.85 +0.9
253,171 + ABZR87_RS01220 0.85 +1.2
253,172 - ABZR87_RS01220 0.85 +0.3
253,172 - ABZR87_RS01220 0.85 +0.3
253,172 - ABZR87_RS01220 0.85 +0.8
253,328 + +1.0
253,328 + +0.8
253,328 + +1.2
253,329 - -1.5
253,329 - -0.8
253,329 - +0.1
253,329 - -0.1
253,329 - -0.1
253,329 - +0.1
253,330 + +1.0
253,330 + +0.7
253,330 + +0.8
253,331 - -1.1
253,331 - +0.2
253,331 - +0.1
253,331 - +0.4
253,349 + -0.5
253,350 - -0.5
253,350 - -0.6
253,423 + +0.0
253,423 + +0.2
253,423 + +0.0
253,424 - -0.3
253,424 - -0.6
253,424 - -0.0
253,424 - -0.2
253,430 - +0.3
253,447 + -1.2
253,447 + -0.6
253,447 + +0.3
253,447 + +0.8
253,448 - -0.9
253,448 - -0.1
253,448 - +0.4
253,448 - -0.1
253,455 + -1.5
253,456 - -0.9
253,619 + ABZR87_RS01225 0.24 -1.6
253,619 + ABZR87_RS01225 0.24 -0.4
253,620 - ABZR87_RS01225 0.24 -2.2
253,620 - ABZR87_RS01225 0.24 -1.5
254,053 + ABZR87_RS01225 0.84 -1.3
254,053 + ABZR87_RS01225 0.84 -1.5

Or see this region's nucleotide sequence