Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01210

Experiment: soil sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01200 and ABZR87_RS01205 overlap by 4 nucleotidesABZR87_RS01205 and ABZR87_RS01210 are separated by 8 nucleotidesABZR87_RS01210 and ABZR87_RS01215 are separated by 197 nucleotides ABZR87_RS01200: ABZR87_RS01200 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 249,360 to 249,962 _RS01200 ABZR87_RS01205: ABZR87_RS01205 - GspH/FimT family pseudopilin, at 249,959 to 250,432 _RS01205 ABZR87_RS01210: ABZR87_RS01210 - type IV pilin protein, at 250,441 to 250,878 _RS01210 ABZR87_RS01215: ABZR87_RS01215 - PilT/PilU family type 4a pilus ATPase, at 251,076 to 252,215 _RS01215 Position (kb) 250 251Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 249.499 kb on + strand, within ABZR87_RS01200at 249.500 kb on - strand, within ABZR87_RS01200at 249.591 kb on - strand, within ABZR87_RS01200at 249.724 kb on + strand, within ABZR87_RS01200at 249.724 kb on + strand, within ABZR87_RS01200at 249.724 kb on + strand, within ABZR87_RS01200at 249.725 kb on - strand, within ABZR87_RS01200at 249.725 kb on - strand, within ABZR87_RS01200at 249.725 kb on - strand, within ABZR87_RS01200at 249.725 kb on - strand, within ABZR87_RS01200at 249.802 kb on + strand, within ABZR87_RS01200at 250.143 kb on + strand, within ABZR87_RS01205at 250.563 kb on - strand, within ABZR87_RS01210at 250.563 kb on - strand, within ABZR87_RS01210at 250.601 kb on + strand, within ABZR87_RS01210at 250.601 kb on + strand, within ABZR87_RS01210at 250.602 kb on - strand, within ABZR87_RS01210at 250.602 kb on - strand, within ABZR87_RS01210at 250.602 kb on - strand, within ABZR87_RS01210at 250.664 kb on + strand, within ABZR87_RS01210at 250.665 kb on - strand, within ABZR87_RS01210at 250.754 kb on + strand, within ABZR87_RS01210at 250.754 kb on + strand, within ABZR87_RS01210at 250.754 kb on + strand, within ABZR87_RS01210at 250.755 kb on - strand, within ABZR87_RS01210at 250.755 kb on - strand, within ABZR87_RS01210at 250.755 kb on - strand, within ABZR87_RS01210at 250.755 kb on - strand, within ABZR87_RS01210at 250.763 kb on + strand, within ABZR87_RS01210at 250.764 kb on - strand, within ABZR87_RS01210at 250.764 kb on - strand, within ABZR87_RS01210at 250.764 kb on - strand, within ABZR87_RS01210at 250.772 kb on + strand, within ABZR87_RS01210at 250.773 kb on - strand, within ABZR87_RS01210at 250.830 kb on + strand, within ABZR87_RS01210at 250.861 kb on + strandat 250.862 kb on - strandat 250.894 kb on + strandat 250.895 kb on - strandat 250.895 kb on - strandat 250.917 kb on + strandat 250.960 kb on + strandat 250.961 kb on - strandat 250.961 kb on - strandat 251.046 kb on + strandat 251.046 kb on + strandat 251.047 kb on - strandat 251.047 kb on - strandat 251.047 kb on - strandat 251.060 kb on + strandat 251.061 kb on - strandat 251.197 kb on + strand, within ABZR87_RS01215at 251.197 kb on + strand, within ABZR87_RS01215at 251.197 kb on + strand, within ABZR87_RS01215at 251.197 kb on + strand, within ABZR87_RS01215at 251.197 kb on + strand, within ABZR87_RS01215at 251.198 kb on - strand, within ABZR87_RS01215at 251.198 kb on - strand, within ABZR87_RS01215at 251.198 kb on - strand, within ABZR87_RS01215at 251.218 kb on + strand, within ABZR87_RS01215at 251.218 kb on + strand, within ABZR87_RS01215at 251.218 kb on + strand, within ABZR87_RS01215at 251.219 kb on - strand, within ABZR87_RS01215at 251.542 kb on + strand, within ABZR87_RS01215at 251.542 kb on + strand, within ABZR87_RS01215at 251.542 kb on + strand, within ABZR87_RS01215at 251.542 kb on + strand, within ABZR87_RS01215at 251.554 kb on + strand, within ABZR87_RS01215at 251.555 kb on - strand, within ABZR87_RS01215at 251.701 kb on + strand, within ABZR87_RS01215at 251.701 kb on + strand, within ABZR87_RS01215at 251.701 kb on + strand, within ABZR87_RS01215at 251.702 kb on - strand, within ABZR87_RS01215at 251.702 kb on - strand, within ABZR87_RS01215at 251.702 kb on - strand, within ABZR87_RS01215at 251.702 kb on - strand, within ABZR87_RS01215at 251.702 kb on - strand, within ABZR87_RS01215at 251.702 kb on - strand, within ABZR87_RS01215at 251.737 kb on + strand, within ABZR87_RS01215

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 6; outgrowth in LB
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249,499 + ABZR87_RS01200 0.23 +0.5
249,500 - ABZR87_RS01200 0.23 +0.6
249,591 - ABZR87_RS01200 0.38 +0.3
249,724 + ABZR87_RS01200 0.60 -0.6
249,724 + ABZR87_RS01200 0.60 +0.1
249,724 + ABZR87_RS01200 0.60 +0.1
249,725 - ABZR87_RS01200 0.61 -0.7
249,725 - ABZR87_RS01200 0.61 -2.6
249,725 - ABZR87_RS01200 0.61 -0.3
249,725 - ABZR87_RS01200 0.61 +0.6
249,802 + ABZR87_RS01200 0.73 -1.0
250,143 + ABZR87_RS01205 0.39 +1.4
250,563 - ABZR87_RS01210 0.28 +0.6
250,563 - ABZR87_RS01210 0.28 +0.7
250,601 + ABZR87_RS01210 0.37 -0.5
250,601 + ABZR87_RS01210 0.37 +0.5
250,602 - ABZR87_RS01210 0.37 +1.4
250,602 - ABZR87_RS01210 0.37 +0.2
250,602 - ABZR87_RS01210 0.37 -0.0
250,664 + ABZR87_RS01210 0.51 +0.3
250,665 - ABZR87_RS01210 0.51 -0.6
250,754 + ABZR87_RS01210 0.71 +0.6
250,754 + ABZR87_RS01210 0.71 -0.7
250,754 + ABZR87_RS01210 0.71 -0.8
250,755 - ABZR87_RS01210 0.72 -0.2
250,755 - ABZR87_RS01210 0.72 +0.3
250,755 - ABZR87_RS01210 0.72 +0.0
250,755 - ABZR87_RS01210 0.72 +0.1
250,763 + ABZR87_RS01210 0.74 -0.8
250,764 - ABZR87_RS01210 0.74 -0.5
250,764 - ABZR87_RS01210 0.74 +0.2
250,764 - ABZR87_RS01210 0.74 +0.6
250,772 + ABZR87_RS01210 0.76 +0.2
250,773 - ABZR87_RS01210 0.76 -0.4
250,830 + ABZR87_RS01210 0.89 +0.3
250,861 + -0.7
250,862 - -0.0
250,894 + +0.9
250,895 - -0.9
250,895 - +0.3
250,917 + -0.0
250,960 + -1.4
250,961 - +0.8
250,961 - +0.5
251,046 + +1.4
251,046 + -0.2
251,047 - +0.2
251,047 - +0.1
251,047 - +0.1
251,060 + +0.7
251,061 - -0.0
251,197 + ABZR87_RS01215 0.11 +4.8
251,197 + ABZR87_RS01215 0.11 +3.7
251,197 + ABZR87_RS01215 0.11 +3.7
251,197 + ABZR87_RS01215 0.11 +4.8
251,197 + ABZR87_RS01215 0.11 +3.7
251,198 - ABZR87_RS01215 0.11 +4.1
251,198 - ABZR87_RS01215 0.11 +3.9
251,198 - ABZR87_RS01215 0.11 +4.5
251,218 + ABZR87_RS01215 0.12 +3.8
251,218 + ABZR87_RS01215 0.12 +3.8
251,218 + ABZR87_RS01215 0.12 +3.9
251,219 - ABZR87_RS01215 0.13 +3.4
251,542 + ABZR87_RS01215 0.41 +4.3
251,542 + ABZR87_RS01215 0.41 +4.3
251,542 + ABZR87_RS01215 0.41 +3.0
251,542 + ABZR87_RS01215 0.41 +3.2
251,554 + ABZR87_RS01215 0.42 +3.1
251,555 - ABZR87_RS01215 0.42 +2.8
251,701 + ABZR87_RS01215 0.55 +3.4
251,701 + ABZR87_RS01215 0.55 +3.7
251,701 + ABZR87_RS01215 0.55 +3.9
251,702 - ABZR87_RS01215 0.55 +3.7
251,702 - ABZR87_RS01215 0.55 +4.2
251,702 - ABZR87_RS01215 0.55 +3.5
251,702 - ABZR87_RS01215 0.55 +4.4
251,702 - ABZR87_RS01215 0.55 +4.3
251,702 - ABZR87_RS01215 0.55 +4.1
251,737 + ABZR87_RS01215 0.58 +3.7

Or see this region's nucleotide sequence