Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01085

Experiment: soil sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01080 and ABZR87_RS01085 are separated by 94 nucleotidesABZR87_RS01085 and ABZR87_RS01090 overlap by 4 nucleotides ABZR87_RS01080: ABZR87_RS01080 - S8 family serine peptidase, at 217,347 to 219,401 _RS01080 ABZR87_RS01085: ABZR87_RS01085 - rhombosortase, at 219,496 to 220,116 _RS01085 ABZR87_RS01090: ABZR87_RS01090 - bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase, at 220,113 to 222,956 _RS01090 Position (kb) 219 220 221Strain fitness (log2 ratio) -2 -1 0 1at 218.583 kb on + strand, within ABZR87_RS01080at 218.603 kb on + strand, within ABZR87_RS01080at 218.604 kb on - strand, within ABZR87_RS01080at 218.604 kb on - strand, within ABZR87_RS01080at 218.715 kb on + strand, within ABZR87_RS01080at 218.715 kb on + strand, within ABZR87_RS01080at 218.715 kb on + strand, within ABZR87_RS01080at 218.715 kb on + strand, within ABZR87_RS01080at 218.716 kb on - strand, within ABZR87_RS01080at 218.716 kb on - strand, within ABZR87_RS01080at 218.716 kb on - strand, within ABZR87_RS01080at 218.716 kb on - strand, within ABZR87_RS01080at 218.718 kb on + strand, within ABZR87_RS01080at 218.718 kb on + strand, within ABZR87_RS01080at 218.718 kb on + strand, within ABZR87_RS01080at 218.718 kb on + strand, within ABZR87_RS01080at 218.718 kb on + strand, within ABZR87_RS01080at 218.719 kb on - strand, within ABZR87_RS01080at 218.719 kb on - strand, within ABZR87_RS01080at 218.719 kb on - strand, within ABZR87_RS01080at 218.719 kb on - strand, within ABZR87_RS01080at 218.859 kb on - strand, within ABZR87_RS01080at 218.977 kb on + strand, within ABZR87_RS01080at 218.999 kb on + strand, within ABZR87_RS01080at 219.000 kb on - strand, within ABZR87_RS01080at 219.026 kb on + strand, within ABZR87_RS01080at 219.090 kb on - strand, within ABZR87_RS01080at 219.117 kb on + strand, within ABZR87_RS01080at 219.118 kb on - strand, within ABZR87_RS01080at 219.118 kb on - strand, within ABZR87_RS01080at 219.118 kb on - strand, within ABZR87_RS01080at 219.118 kb on - strand, within ABZR87_RS01080at 219.153 kb on + strand, within ABZR87_RS01080at 219.153 kb on + strand, within ABZR87_RS01080at 219.153 kb on + strand, within ABZR87_RS01080at 219.154 kb on - strand, within ABZR87_RS01080at 219.408 kb on - strandat 219.408 kb on - strandat 219.589 kb on + strand, within ABZR87_RS01085at 219.589 kb on + strand, within ABZR87_RS01085at 219.589 kb on + strand, within ABZR87_RS01085at 219.590 kb on - strand, within ABZR87_RS01085at 220.011 kb on - strand, within ABZR87_RS01085at 220.011 kb on - strand, within ABZR87_RS01085at 220.026 kb on - strand, within ABZR87_RS01085at 220.178 kb on + strandat 220.178 kb on + strandat 220.179 kb on - strandat 220.179 kb on - strandat 220.250 kb on - strandat 220.535 kb on + strand, within ABZR87_RS01090at 220.742 kb on + strand, within ABZR87_RS01090at 220.786 kb on + strand, within ABZR87_RS01090at 220.786 kb on + strand, within ABZR87_RS01090at 220.787 kb on - strand, within ABZR87_RS01090at 220.787 kb on - strand, within ABZR87_RS01090at 220.820 kb on - strand, within ABZR87_RS01090at 220.850 kb on - strand, within ABZR87_RS01090at 220.879 kb on + strand, within ABZR87_RS01090at 220.880 kb on - strand, within ABZR87_RS01090

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 6; outgrowth in LB
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218,583 + ABZR87_RS01080 0.60 -0.4
218,603 + ABZR87_RS01080 0.61 +0.8
218,604 - ABZR87_RS01080 0.61 -0.6
218,604 - ABZR87_RS01080 0.61 -1.1
218,715 + ABZR87_RS01080 0.67 -0.2
218,715 + ABZR87_RS01080 0.67 -0.4
218,715 + ABZR87_RS01080 0.67 -0.5
218,715 + ABZR87_RS01080 0.67 -0.3
218,716 - ABZR87_RS01080 0.67 +0.5
218,716 - ABZR87_RS01080 0.67 +0.4
218,716 - ABZR87_RS01080 0.67 -1.1
218,716 - ABZR87_RS01080 0.67 +0.7
218,718 + ABZR87_RS01080 0.67 -0.2
218,718 + ABZR87_RS01080 0.67 -1.6
218,718 + ABZR87_RS01080 0.67 -0.3
218,718 + ABZR87_RS01080 0.67 -1.0
218,718 + ABZR87_RS01080 0.67 -1.5
218,719 - ABZR87_RS01080 0.67 +0.3
218,719 - ABZR87_RS01080 0.67 +0.6
218,719 - ABZR87_RS01080 0.67 -0.8
218,719 - ABZR87_RS01080 0.67 -0.1
218,859 - ABZR87_RS01080 0.74 -0.6
218,977 + ABZR87_RS01080 0.79 -1.5
218,999 + ABZR87_RS01080 0.80 +0.1
219,000 - ABZR87_RS01080 0.80 -0.7
219,026 + ABZR87_RS01080 0.82 -1.1
219,090 - ABZR87_RS01080 0.85 -0.0
219,117 + ABZR87_RS01080 0.86 +0.3
219,118 - ABZR87_RS01080 0.86 -1.1
219,118 - ABZR87_RS01080 0.86 -0.3
219,118 - ABZR87_RS01080 0.86 -0.4
219,118 - ABZR87_RS01080 0.86 -0.2
219,153 + ABZR87_RS01080 0.88 +1.0
219,153 + ABZR87_RS01080 0.88 -1.1
219,153 + ABZR87_RS01080 0.88 +1.1
219,154 - ABZR87_RS01080 0.88 -0.6
219,408 - -0.4
219,408 - +1.1
219,589 + ABZR87_RS01085 0.15 -1.8
219,589 + ABZR87_RS01085 0.15 -1.6
219,589 + ABZR87_RS01085 0.15 -0.7
219,590 - ABZR87_RS01085 0.15 -0.3
220,011 - ABZR87_RS01085 0.83 -2.3
220,011 - ABZR87_RS01085 0.83 -2.4
220,026 - ABZR87_RS01085 0.85 -1.4
220,178 + -2.1
220,178 + -0.6
220,179 - -0.6
220,179 - +0.1
220,250 - -1.8
220,535 + ABZR87_RS01090 0.15 -2.0
220,742 + ABZR87_RS01090 0.22 -0.1
220,786 + ABZR87_RS01090 0.24 -1.4
220,786 + ABZR87_RS01090 0.24 +1.3
220,787 - ABZR87_RS01090 0.24 +0.9
220,787 - ABZR87_RS01090 0.24 -0.4
220,820 - ABZR87_RS01090 0.25 -1.6
220,850 - ABZR87_RS01090 0.26 -1.7
220,879 + ABZR87_RS01090 0.27 -1.0
220,880 - ABZR87_RS01090 0.27 -0.4

Or see this region's nucleotide sequence