Experiment: soil sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01075 and ABZR87_RS01080 are separated by 224 nucleotides ABZR87_RS01080 and ABZR87_RS01085 are separated by 94 nucleotides ABZR87_RS01085 and ABZR87_RS01090 overlap by 4 nucleotides
ABZR87_RS01075: ABZR87_RS01075 - MprA protease, GlyGly-CTERM protein-sorting domain-containing form, at 215,473 to 217,122
_RS01075
ABZR87_RS01080: ABZR87_RS01080 - S8 family serine peptidase, at 217,347 to 219,401
_RS01080
ABZR87_RS01085: ABZR87_RS01085 - rhombosortase, at 219,496 to 220,116
_RS01085
ABZR87_RS01090: ABZR87_RS01090 - bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase, at 220,113 to 222,956
_RS01090
Position (kb) 217
218
219
220 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 216.584 kb on - strand, within ABZR87_RS01075 at 216.747 kb on + strand, within ABZR87_RS01075 at 216.748 kb on - strand, within ABZR87_RS01075 at 216.937 kb on + strand, within ABZR87_RS01075 at 216.937 kb on + strand, within ABZR87_RS01075 at 216.937 kb on + strand, within ABZR87_RS01075 at 216.937 kb on + strand, within ABZR87_RS01075 at 216.938 kb on - strand, within ABZR87_RS01075 at 216.938 kb on - strand, within ABZR87_RS01075 at 216.938 kb on - strand, within ABZR87_RS01075 at 217.014 kb on + strand at 217.088 kb on + strand at 217.131 kb on + strand at 217.131 kb on + strand at 217.131 kb on + strand at 217.132 kb on - strand at 217.132 kb on - strand at 217.132 kb on - strand at 217.132 kb on - strand at 217.221 kb on + strand at 217.222 kb on - strand at 217.222 kb on - strand at 217.243 kb on + strand at 217.244 kb on - strand at 217.244 kb on - strand at 217.252 kb on + strand at 217.252 kb on + strand at 217.253 kb on - strand at 217.256 kb on + strand at 217.407 kb on + strand at 217.407 kb on + strand at 217.407 kb on + strand at 217.408 kb on - strand at 217.408 kb on - strand at 217.408 kb on - strand at 217.487 kb on + strand at 217.487 kb on + strand at 217.602 kb on + strand, within ABZR87_RS01080 at 217.602 kb on + strand, within ABZR87_RS01080 at 217.602 kb on + strand, within ABZR87_RS01080 at 217.602 kb on + strand, within ABZR87_RS01080 at 217.602 kb on + strand, within ABZR87_RS01080 at 217.603 kb on - strand, within ABZR87_RS01080 at 217.603 kb on - strand, within ABZR87_RS01080 at 217.646 kb on + strand, within ABZR87_RS01080 at 217.713 kb on + strand, within ABZR87_RS01080 at 217.713 kb on + strand, within ABZR87_RS01080 at 217.714 kb on - strand, within ABZR87_RS01080 at 217.714 kb on - strand, within ABZR87_RS01080 at 217.714 kb on - strand, within ABZR87_RS01080 at 217.714 kb on - strand, within ABZR87_RS01080 at 217.844 kb on + strand, within ABZR87_RS01080 at 217.845 kb on - strand, within ABZR87_RS01080 at 217.845 kb on - strand, within ABZR87_RS01080 at 217.862 kb on + strand, within ABZR87_RS01080 at 217.862 kb on + strand, within ABZR87_RS01080 at 217.862 kb on + strand, within ABZR87_RS01080 at 217.947 kb on - strand, within ABZR87_RS01080 at 217.984 kb on - strand, within ABZR87_RS01080 at 218.075 kb on + strand, within ABZR87_RS01080 at 218.075 kb on + strand, within ABZR87_RS01080 at 218.076 kb on - strand, within ABZR87_RS01080 at 218.076 kb on - strand, within ABZR87_RS01080 at 218.076 kb on - strand, within ABZR87_RS01080 at 218.125 kb on - strand, within ABZR87_RS01080 at 218.133 kb on + strand, within ABZR87_RS01080 at 218.134 kb on - strand, within ABZR87_RS01080 at 218.134 kb on - strand, within ABZR87_RS01080 at 218.165 kb on + strand, within ABZR87_RS01080 at 218.165 kb on + strand, within ABZR87_RS01080 at 218.165 kb on + strand, within ABZR87_RS01080 at 218.165 kb on + strand, within ABZR87_RS01080 at 218.165 kb on + strand, within ABZR87_RS01080 at 218.166 kb on - strand, within ABZR87_RS01080 at 218.166 kb on - strand, within ABZR87_RS01080 at 218.166 kb on - strand, within ABZR87_RS01080 at 218.166 kb on - strand, within ABZR87_RS01080 at 218.166 kb on - strand, within ABZR87_RS01080 at 218.583 kb on + strand, within ABZR87_RS01080 at 218.603 kb on + strand, within ABZR87_RS01080 at 218.604 kb on - strand, within ABZR87_RS01080 at 218.604 kb on - strand, within ABZR87_RS01080 at 218.715 kb on + strand, within ABZR87_RS01080 at 218.715 kb on + strand, within ABZR87_RS01080 at 218.715 kb on + strand, within ABZR87_RS01080 at 218.715 kb on + strand, within ABZR87_RS01080 at 218.716 kb on - strand, within ABZR87_RS01080 at 218.716 kb on - strand, within ABZR87_RS01080 at 218.716 kb on - strand, within ABZR87_RS01080 at 218.716 kb on - strand, within ABZR87_RS01080 at 218.718 kb on + strand, within ABZR87_RS01080 at 218.718 kb on + strand, within ABZR87_RS01080 at 218.718 kb on + strand, within ABZR87_RS01080 at 218.718 kb on + strand, within ABZR87_RS01080 at 218.718 kb on + strand, within ABZR87_RS01080 at 218.719 kb on - strand, within ABZR87_RS01080 at 218.719 kb on - strand, within ABZR87_RS01080 at 218.719 kb on - strand, within ABZR87_RS01080 at 218.719 kb on - strand, within ABZR87_RS01080 at 218.859 kb on - strand, within ABZR87_RS01080 at 218.977 kb on + strand, within ABZR87_RS01080 at 218.999 kb on + strand, within ABZR87_RS01080 at 219.000 kb on - strand, within ABZR87_RS01080 at 219.026 kb on + strand, within ABZR87_RS01080 at 219.090 kb on - strand, within ABZR87_RS01080 at 219.117 kb on + strand, within ABZR87_RS01080 at 219.118 kb on - strand, within ABZR87_RS01080 at 219.118 kb on - strand, within ABZR87_RS01080 at 219.118 kb on - strand, within ABZR87_RS01080 at 219.118 kb on - strand, within ABZR87_RS01080 at 219.153 kb on + strand, within ABZR87_RS01080 at 219.153 kb on + strand, within ABZR87_RS01080 at 219.153 kb on + strand, within ABZR87_RS01080 at 219.154 kb on - strand, within ABZR87_RS01080 at 219.408 kb on - strand at 219.408 kb on - strand at 219.589 kb on + strand, within ABZR87_RS01085 at 219.589 kb on + strand, within ABZR87_RS01085 at 219.589 kb on + strand, within ABZR87_RS01085 at 219.590 kb on - strand, within ABZR87_RS01085 at 220.011 kb on - strand, within ABZR87_RS01085 at 220.011 kb on - strand, within ABZR87_RS01085 at 220.026 kb on - strand, within ABZR87_RS01085 at 220.178 kb on + strand at 220.178 kb on + strand at 220.179 kb on - strand at 220.179 kb on - strand at 220.250 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 6; outgrowth in LB remove 216,584 - ABZR87_RS01075 0.67 -0.5 216,747 + ABZR87_RS01075 0.77 +1.0 216,748 - ABZR87_RS01075 0.77 -0.7 216,937 + ABZR87_RS01075 0.89 +0.1 216,937 + ABZR87_RS01075 0.89 -0.1 216,937 + ABZR87_RS01075 0.89 +0.3 216,937 + ABZR87_RS01075 0.89 +0.4 216,938 - ABZR87_RS01075 0.89 -1.3 216,938 - ABZR87_RS01075 0.89 +0.7 216,938 - ABZR87_RS01075 0.89 -0.4 217,014 + -0.2 217,088 + +0.1 217,131 + +0.8 217,131 + -0.9 217,131 + -0.1 217,132 - -0.2 217,132 - +0.2 217,132 - +0.1 217,132 - +0.3 217,221 + -2.4 217,222 - +0.8 217,222 - -0.4 217,243 + +0.3 217,244 - -0.7 217,244 - +0.0 217,252 + +1.1 217,252 + +0.8 217,253 - -0.3 217,256 + +0.3 217,407 + +1.5 217,407 + +0.2 217,407 + +0.6 217,408 - -3.0 217,408 - -0.9 217,408 - +0.5 217,487 + -0.7 217,487 + -0.3 217,602 + ABZR87_RS01080 0.12 +1.5 217,602 + ABZR87_RS01080 0.12 +0.3 217,602 + ABZR87_RS01080 0.12 -0.7 217,602 + ABZR87_RS01080 0.12 -1.7 217,602 + ABZR87_RS01080 0.12 +0.4 217,603 - ABZR87_RS01080 0.12 -1.2 217,603 - ABZR87_RS01080 0.12 +0.8 217,646 + ABZR87_RS01080 0.15 +2.3 217,713 + ABZR87_RS01080 0.18 -0.2 217,713 + ABZR87_RS01080 0.18 -0.6 217,714 - ABZR87_RS01080 0.18 -0.9 217,714 - ABZR87_RS01080 0.18 -1.6 217,714 - ABZR87_RS01080 0.18 -1.8 217,714 - ABZR87_RS01080 0.18 +0.9 217,844 + ABZR87_RS01080 0.24 +0.8 217,845 - ABZR87_RS01080 0.24 -0.3 217,845 - ABZR87_RS01080 0.24 -1.3 217,862 + ABZR87_RS01080 0.25 +0.2 217,862 + ABZR87_RS01080 0.25 -0.4 217,862 + ABZR87_RS01080 0.25 -0.6 217,947 - ABZR87_RS01080 0.29 +0.1 217,984 - ABZR87_RS01080 0.31 -0.6 218,075 + ABZR87_RS01080 0.35 -1.6 218,075 + ABZR87_RS01080 0.35 -0.6 218,076 - ABZR87_RS01080 0.35 +1.3 218,076 - ABZR87_RS01080 0.35 +0.4 218,076 - ABZR87_RS01080 0.35 -1.0 218,125 - ABZR87_RS01080 0.38 -0.0 218,133 + ABZR87_RS01080 0.38 -0.8 218,134 - ABZR87_RS01080 0.38 -0.0 218,134 - ABZR87_RS01080 0.38 -1.1 218,165 + ABZR87_RS01080 0.40 -1.0 218,165 + ABZR87_RS01080 0.40 +0.6 218,165 + ABZR87_RS01080 0.40 -1.9 218,165 + ABZR87_RS01080 0.40 -0.4 218,165 + ABZR87_RS01080 0.40 -0.9 218,166 - ABZR87_RS01080 0.40 -0.9 218,166 - ABZR87_RS01080 0.40 -1.7 218,166 - ABZR87_RS01080 0.40 -1.7 218,166 - ABZR87_RS01080 0.40 -1.6 218,166 - ABZR87_RS01080 0.40 -0.8 218,583 + ABZR87_RS01080 0.60 -0.4 218,603 + ABZR87_RS01080 0.61 +0.8 218,604 - ABZR87_RS01080 0.61 -0.6 218,604 - ABZR87_RS01080 0.61 -1.1 218,715 + ABZR87_RS01080 0.67 -0.2 218,715 + ABZR87_RS01080 0.67 -0.4 218,715 + ABZR87_RS01080 0.67 -0.5 218,715 + ABZR87_RS01080 0.67 -0.3 218,716 - ABZR87_RS01080 0.67 +0.5 218,716 - ABZR87_RS01080 0.67 +0.4 218,716 - ABZR87_RS01080 0.67 -1.1 218,716 - ABZR87_RS01080 0.67 +0.7 218,718 + ABZR87_RS01080 0.67 -0.2 218,718 + ABZR87_RS01080 0.67 -1.6 218,718 + ABZR87_RS01080 0.67 -0.3 218,718 + ABZR87_RS01080 0.67 -1.0 218,718 + ABZR87_RS01080 0.67 -1.5 218,719 - ABZR87_RS01080 0.67 +0.3 218,719 - ABZR87_RS01080 0.67 +0.6 218,719 - ABZR87_RS01080 0.67 -0.8 218,719 - ABZR87_RS01080 0.67 -0.1 218,859 - ABZR87_RS01080 0.74 -0.6 218,977 + ABZR87_RS01080 0.79 -1.5 218,999 + ABZR87_RS01080 0.80 +0.1 219,000 - ABZR87_RS01080 0.80 -0.7 219,026 + ABZR87_RS01080 0.82 -1.1 219,090 - ABZR87_RS01080 0.85 -0.0 219,117 + ABZR87_RS01080 0.86 +0.3 219,118 - ABZR87_RS01080 0.86 -1.1 219,118 - ABZR87_RS01080 0.86 -0.3 219,118 - ABZR87_RS01080 0.86 -0.4 219,118 - ABZR87_RS01080 0.86 -0.2 219,153 + ABZR87_RS01080 0.88 +1.0 219,153 + ABZR87_RS01080 0.88 -1.1 219,153 + ABZR87_RS01080 0.88 +1.1 219,154 - ABZR87_RS01080 0.88 -0.6 219,408 - -0.4 219,408 - +1.1 219,589 + ABZR87_RS01085 0.15 -1.8 219,589 + ABZR87_RS01085 0.15 -1.6 219,589 + ABZR87_RS01085 0.15 -0.7 219,590 - ABZR87_RS01085 0.15 -0.3 220,011 - ABZR87_RS01085 0.83 -2.3 220,011 - ABZR87_RS01085 0.83 -2.4 220,026 - ABZR87_RS01085 0.85 -1.4 220,178 + -2.1 220,178 + -0.6 220,179 - -0.6 220,179 - +0.1 220,250 - -1.8
Or see this region's nucleotide sequence