Experiment: methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_819 and Pf1N1B4_820 are separated by 331 nucleotides Pf1N1B4_820 and Pf1N1B4_821 are separated by 212 nucleotides
Pf1N1B4_819 - Benzoate transport protein, at 936,605 to 937,810
_819
Pf1N1B4_820 - Glucose-selective porin OprB, at 938,142 to 939,479
_820
Pf1N1B4_821 - Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2), at 939,692 to 942,100
_821
Position (kb) 938
939
940 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 937.245 kb on + strand, within Pf1N1B4_819 at 937.249 kb on + strand, within Pf1N1B4_819 at 937.290 kb on - strand, within Pf1N1B4_819 at 937.290 kb on - strand, within Pf1N1B4_819 at 937.290 kb on - strand, within Pf1N1B4_819 at 937.326 kb on - strand at 937.372 kb on + strand, within Pf1N1B4_819 at 937.372 kb on + strand, within Pf1N1B4_819 at 937.372 kb on + strand, within Pf1N1B4_819 at 937.372 kb on + strand, within Pf1N1B4_819 at 937.373 kb on - strand, within Pf1N1B4_819 at 937.373 kb on - strand, within Pf1N1B4_819 at 937.472 kb on + strand, within Pf1N1B4_819 at 937.472 kb on + strand, within Pf1N1B4_819 at 937.472 kb on + strand, within Pf1N1B4_819 at 937.472 kb on + strand, within Pf1N1B4_819 at 937.472 kb on + strand, within Pf1N1B4_819 at 937.502 kb on + strand, within Pf1N1B4_819 at 937.502 kb on + strand, within Pf1N1B4_819 at 937.502 kb on + strand, within Pf1N1B4_819 at 937.502 kb on + strand, within Pf1N1B4_819 at 937.502 kb on + strand, within Pf1N1B4_819 at 937.502 kb on + strand, within Pf1N1B4_819 at 937.502 kb on + strand, within Pf1N1B4_819 at 937.502 kb on + strand, within Pf1N1B4_819 at 937.502 kb on + strand, within Pf1N1B4_819 at 937.503 kb on - strand, within Pf1N1B4_819 at 937.503 kb on - strand, within Pf1N1B4_819 at 937.503 kb on - strand, within Pf1N1B4_819 at 937.503 kb on - strand, within Pf1N1B4_819 at 937.503 kb on - strand, within Pf1N1B4_819 at 937.503 kb on - strand, within Pf1N1B4_819 at 937.760 kb on + strand at 937.760 kb on + strand at 937.760 kb on + strand at 937.760 kb on + strand at 937.760 kb on + strand at 937.760 kb on + strand at 937.760 kb on + strand at 937.760 kb on + strand at 937.760 kb on + strand at 937.761 kb on - strand at 937.761 kb on - strand at 937.761 kb on - strand at 937.761 kb on - strand at 937.837 kb on + strand at 937.837 kb on + strand at 937.838 kb on - strand at 937.838 kb on - strand at 937.865 kb on + strand at 937.865 kb on + strand at 937.865 kb on + strand at 937.866 kb on - strand at 937.866 kb on - strand at 937.968 kb on - strand at 937.968 kb on - strand at 937.968 kb on - strand at 937.999 kb on + strand at 938.096 kb on + strand at 938.096 kb on + strand at 938.310 kb on + strand, within Pf1N1B4_820 at 938.311 kb on - strand, within Pf1N1B4_820 at 938.335 kb on + strand, within Pf1N1B4_820 at 938.335 kb on + strand, within Pf1N1B4_820 at 938.335 kb on + strand, within Pf1N1B4_820 at 938.335 kb on + strand at 938.336 kb on - strand at 938.336 kb on - strand, within Pf1N1B4_820 at 938.336 kb on - strand, within Pf1N1B4_820 at 938.574 kb on + strand, within Pf1N1B4_820 at 938.575 kb on - strand, within Pf1N1B4_820 at 938.575 kb on - strand, within Pf1N1B4_820 at 938.718 kb on + strand, within Pf1N1B4_820 at 938.718 kb on + strand, within Pf1N1B4_820 at 938.719 kb on - strand, within Pf1N1B4_820 at 938.757 kb on + strand, within Pf1N1B4_820 at 938.757 kb on + strand, within Pf1N1B4_820 at 938.757 kb on + strand, within Pf1N1B4_820 at 938.757 kb on + strand, within Pf1N1B4_820 at 938.758 kb on - strand, within Pf1N1B4_820 at 938.758 kb on - strand, within Pf1N1B4_820 at 938.758 kb on - strand, within Pf1N1B4_820 at 938.797 kb on - strand, within Pf1N1B4_820 at 938.934 kb on + strand, within Pf1N1B4_820 at 938.935 kb on - strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.938 kb on - strand, within Pf1N1B4_820 at 938.940 kb on + strand, within Pf1N1B4_820 at 938.940 kb on + strand, within Pf1N1B4_820 at 938.940 kb on + strand, within Pf1N1B4_820 at 938.940 kb on + strand, within Pf1N1B4_820 at 938.941 kb on - strand, within Pf1N1B4_820 at 938.941 kb on - strand, within Pf1N1B4_820 at 938.967 kb on + strand, within Pf1N1B4_820 at 938.967 kb on + strand, within Pf1N1B4_820 at 938.967 kb on + strand, within Pf1N1B4_820 at 938.967 kb on + strand, within Pf1N1B4_820 at 938.968 kb on - strand, within Pf1N1B4_820 at 939.149 kb on + strand at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.174 kb on + strand, within Pf1N1B4_820 at 939.174 kb on + strand at 939.175 kb on - strand, within Pf1N1B4_820 at 939.352 kb on - strand at 939.354 kb on + strand at 939.402 kb on + strand at 939.402 kb on + strand at 939.402 kb on + strand at 939.402 kb on + strand at 939.402 kb on + strand at 939.403 kb on - strand at 939.403 kb on - strand at 939.403 kb on - strand at 939.477 kb on + strand at 939.477 kb on + strand at 939.478 kb on - strand at 939.478 kb on - strand at 939.478 kb on - strand at 939.527 kb on + strand at 939.613 kb on + strand at 939.613 kb on + strand at 939.613 kb on + strand at 939.614 kb on - strand at 939.614 kb on - strand at 939.614 kb on - strand at 939.643 kb on + strand at 939.643 kb on + strand at 939.643 kb on + strand at 939.643 kb on + strand at 939.643 kb on + strand at 939.644 kb on - strand at 939.644 kb on - strand at 939.644 kb on - strand at 939.644 kb on - strand at 939.664 kb on + strand at 939.668 kb on + strand at 939.668 kb on + strand at 939.668 kb on + strand at 939.668 kb on + strand at 939.669 kb on - strand at 939.669 kb on - strand at 939.669 kb on - strand at 939.669 kb on - strand at 939.669 kb on - strand at 939.691 kb on + strand at 939.691 kb on + strand at 939.691 kb on + strand at 939.691 kb on + strand at 939.691 kb on + strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.756 kb on + strand at 939.756 kb on + strand at 939.757 kb on - strand at 939.757 kb on - strand at 939.757 kb on - strand at 939.757 kb on - strand at 939.759 kb on + strand at 939.760 kb on - strand at 939.818 kb on + strand at 939.818 kb on + strand at 939.818 kb on + strand at 939.819 kb on - strand at 939.819 kb on - strand at 939.819 kb on - strand at 939.821 kb on + strand at 939.821 kb on + strand at 939.919 kb on + strand at 940.244 kb on + strand, within Pf1N1B4_821 at 940.304 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.008 vol% remove 937,245 + Pf1N1B4_819 0.53 -0.1 937,249 + Pf1N1B4_819 0.53 -1.2 937,290 - Pf1N1B4_819 0.57 -1.0 937,290 - Pf1N1B4_819 0.57 -2.2 937,290 - Pf1N1B4_819 0.57 -0.9 937,326 - +0.4 937,372 + Pf1N1B4_819 0.64 -0.3 937,372 + Pf1N1B4_819 0.64 -0.9 937,372 + Pf1N1B4_819 0.64 -1.5 937,372 + Pf1N1B4_819 0.64 +0.7 937,373 - Pf1N1B4_819 0.64 -1.7 937,373 - Pf1N1B4_819 0.64 -1.9 937,472 + Pf1N1B4_819 0.72 -0.9 937,472 + Pf1N1B4_819 0.72 +0.3 937,472 + Pf1N1B4_819 0.72 +0.8 937,472 + Pf1N1B4_819 0.72 -0.5 937,472 + Pf1N1B4_819 0.72 -0.1 937,502 + Pf1N1B4_819 0.74 -2.7 937,502 + Pf1N1B4_819 0.74 +0.8 937,502 + Pf1N1B4_819 0.74 +1.8 937,502 + Pf1N1B4_819 0.74 +0.8 937,502 + Pf1N1B4_819 0.74 -1.5 937,502 + Pf1N1B4_819 0.74 +0.1 937,502 + Pf1N1B4_819 0.74 +0.4 937,502 + Pf1N1B4_819 0.74 -1.5 937,502 + Pf1N1B4_819 0.74 -0.6 937,503 - Pf1N1B4_819 0.74 +2.1 937,503 - Pf1N1B4_819 0.74 +2.1 937,503 - Pf1N1B4_819 0.74 +0.1 937,503 - Pf1N1B4_819 0.74 +0.5 937,503 - Pf1N1B4_819 0.74 +0.5 937,503 - Pf1N1B4_819 0.74 +1.1 937,760 + +1.1 937,760 + -0.5 937,760 + -0.2 937,760 + -1.2 937,760 + +0.5 937,760 + +0.5 937,760 + +0.4 937,760 + +0.5 937,760 + +1.6 937,761 - -0.5 937,761 - +0.6 937,761 - +1.3 937,761 - -0.6 937,837 + -1.2 937,837 + -0.0 937,838 - -0.5 937,838 - +1.6 937,865 + -1.2 937,865 + +0.5 937,865 + -0.9 937,866 - +0.4 937,866 - -0.9 937,968 - +0.3 937,968 - +0.6 937,968 - +0.5 937,999 + -0.9 938,096 + -2.6 938,096 + +1.1 938,310 + Pf1N1B4_820 0.13 +1.1 938,311 - Pf1N1B4_820 0.13 +1.5 938,335 + Pf1N1B4_820 0.14 -0.4 938,335 + Pf1N1B4_820 0.14 +0.4 938,335 + Pf1N1B4_820 0.14 -0.0 938,335 + +1.1 938,336 - +2.1 938,336 - Pf1N1B4_820 0.14 +0.9 938,336 - Pf1N1B4_820 0.14 +0.2 938,574 + Pf1N1B4_820 0.32 +1.0 938,575 - Pf1N1B4_820 0.32 +0.3 938,575 - Pf1N1B4_820 0.32 +0.7 938,718 + Pf1N1B4_820 0.43 +0.2 938,718 + Pf1N1B4_820 0.43 +0.9 938,719 - Pf1N1B4_820 0.43 +0.8 938,757 + Pf1N1B4_820 0.46 +1.4 938,757 + Pf1N1B4_820 0.46 +1.0 938,757 + Pf1N1B4_820 0.46 +0.0 938,757 + Pf1N1B4_820 0.46 -0.4 938,758 - Pf1N1B4_820 0.46 -0.3 938,758 - Pf1N1B4_820 0.46 +0.7 938,758 - Pf1N1B4_820 0.46 -0.3 938,797 - Pf1N1B4_820 0.49 +0.0 938,934 + Pf1N1B4_820 0.59 -1.5 938,935 - Pf1N1B4_820 0.59 +1.4 938,937 + Pf1N1B4_820 0.59 -1.7 938,937 + Pf1N1B4_820 0.59 +1.3 938,937 + Pf1N1B4_820 0.59 +0.7 938,937 + Pf1N1B4_820 0.59 -0.2 938,937 + Pf1N1B4_820 0.59 +1.1 938,937 + Pf1N1B4_820 0.59 -0.5 938,938 - Pf1N1B4_820 0.59 -1.7 938,940 + Pf1N1B4_820 0.60 -1.2 938,940 + Pf1N1B4_820 0.60 +0.8 938,940 + Pf1N1B4_820 0.60 -0.0 938,940 + Pf1N1B4_820 0.60 +0.4 938,941 - Pf1N1B4_820 0.60 +0.1 938,941 - Pf1N1B4_820 0.60 +0.5 938,967 + Pf1N1B4_820 0.62 -0.5 938,967 + Pf1N1B4_820 0.62 +0.4 938,967 + Pf1N1B4_820 0.62 -1.2 938,967 + Pf1N1B4_820 0.62 +2.4 938,968 - Pf1N1B4_820 0.62 +1.0 939,149 + +0.1 939,153 + Pf1N1B4_820 0.76 -0.5 939,153 + Pf1N1B4_820 0.76 +0.6 939,153 + Pf1N1B4_820 0.76 +1.2 939,153 + Pf1N1B4_820 0.76 -0.8 939,153 + Pf1N1B4_820 0.76 +1.1 939,153 + Pf1N1B4_820 0.76 -1.0 939,153 + Pf1N1B4_820 0.76 +0.1 939,153 + Pf1N1B4_820 0.76 +1.7 939,153 + Pf1N1B4_820 0.76 -1.0 939,153 + Pf1N1B4_820 0.76 +3.7 939,153 + Pf1N1B4_820 0.76 -0.7 939,153 + Pf1N1B4_820 0.76 +0.4 939,153 + Pf1N1B4_820 0.76 -1.2 939,153 + Pf1N1B4_820 0.76 -0.5 939,154 - Pf1N1B4_820 0.76 +0.5 939,154 - Pf1N1B4_820 0.76 -1.5 939,154 - Pf1N1B4_820 0.76 +1.7 939,154 - Pf1N1B4_820 0.76 +1.0 939,154 - Pf1N1B4_820 0.76 +0.4 939,154 - Pf1N1B4_820 0.76 +0.1 939,154 - Pf1N1B4_820 0.76 -0.2 939,174 + Pf1N1B4_820 0.77 -0.0 939,174 + +0.1 939,175 - Pf1N1B4_820 0.77 +1.4 939,352 - +0.5 939,354 + -0.5 939,402 + -0.5 939,402 + +0.5 939,402 + -1.3 939,402 + +1.7 939,402 + +0.1 939,403 - -0.0 939,403 - +0.4 939,403 - +0.7 939,477 + +0.9 939,477 + +2.1 939,478 - -1.5 939,478 - +0.5 939,478 - +1.7 939,527 + -0.7 939,613 + -0.9 939,613 + +0.4 939,613 + -1.5 939,614 - +0.7 939,614 - +0.7 939,614 - -0.2 939,643 + -1.3 939,643 + +1.9 939,643 + -1.2 939,643 + -1.2 939,643 + +0.0 939,644 - +0.7 939,644 - +0.4 939,644 - +1.0 939,644 - +0.5 939,664 + -0.9 939,668 + +0.1 939,668 + -0.4 939,668 + +0.1 939,668 + -0.7 939,669 - +0.7 939,669 - +1.6 939,669 - -1.6 939,669 - -0.1 939,669 - -0.1 939,691 + -0.7 939,691 + +1.1 939,691 + -0.1 939,691 + +0.6 939,691 + -0.4 939,692 - +0.1 939,692 - +1.3 939,692 - +1.1 939,692 - +1.2 939,692 - -0.2 939,692 - +0.1 939,692 - +1.2 939,756 + -1.7 939,756 + -2.3 939,757 - +1.1 939,757 - -1.2 939,757 - +0.2 939,757 - +0.1 939,759 + +1.4 939,760 - +0.8 939,818 + -0.2 939,818 + -1.1 939,818 + +2.7 939,819 - -0.5 939,819 - +0.5 939,819 - +0.0 939,821 + +1.1 939,821 + +0.1 939,919 + +1.3 940,244 + Pf1N1B4_821 0.23 +0.4 940,304 + Pf1N1B4_821 0.25 +0.6 940,388 + Pf1N1B4_821 0.29 +1.1 940,388 + Pf1N1B4_821 0.29 +1.1 940,388 + Pf1N1B4_821 0.29 +0.5 940,388 + Pf1N1B4_821 0.29 +0.5 940,388 + Pf1N1B4_821 0.29 -1.7 940,388 + Pf1N1B4_821 0.29 +0.7 940,388 + Pf1N1B4_821 0.29 +0.5 940,388 + Pf1N1B4_821 0.29 +1.1 940,388 + Pf1N1B4_821 0.29 +1.1 940,389 - Pf1N1B4_821 0.29 +0.5 940,389 - Pf1N1B4_821 0.29 +1.8 940,389 - Pf1N1B4_821 0.29 +0.5 940,389 - Pf1N1B4_821 0.29 +0.5 940,389 - Pf1N1B4_821 0.29 -0.5 940,389 - Pf1N1B4_821 0.29 +1.1 940,389 - Pf1N1B4_821 0.29 +0.9
Or see this region's nucleotide sequence