Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_806

Experiment: methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_805 and Pf1N1B4_806 are separated by 193 nucleotidesPf1N1B4_806 and Pf1N1B4_807 are separated by 214 nucleotidesPf1N1B4_807 and Pf1N1B4_808 are separated by 4 nucleotides Pf1N1B4_805 - hypothetical protein, at 921,245 to 922,516 _805 Pf1N1B4_806 - hypothetical protein, at 922,710 to 924,479 _806 Pf1N1B4_807 - hypothetical protein, at 924,694 to 925,332 _807 Pf1N1B4_808 - hypothetical protein, at 925,337 to 925,477 _808 Position (kb) 922 923 924 925Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 921.824 kb on + strand, within Pf1N1B4_805at 921.824 kb on + strand, within Pf1N1B4_805at 921.824 kb on + strand, within Pf1N1B4_805at 921.824 kb on + strand, within Pf1N1B4_805at 921.825 kb on - strand, within Pf1N1B4_805at 921.838 kb on + strand, within Pf1N1B4_805at 921.839 kb on - strand, within Pf1N1B4_805at 922.015 kb on + strand, within Pf1N1B4_805at 922.016 kb on - strand, within Pf1N1B4_805at 922.016 kb on - strand, within Pf1N1B4_805at 922.127 kb on - strand, within Pf1N1B4_805at 922.127 kb on - strand, within Pf1N1B4_805at 922.149 kb on + strand, within Pf1N1B4_805at 922.149 kb on + strand, within Pf1N1B4_805at 922.149 kb on + strand, within Pf1N1B4_805at 922.149 kb on + strand, within Pf1N1B4_805at 922.149 kb on + strand, within Pf1N1B4_805at 922.150 kb on - strand, within Pf1N1B4_805at 922.271 kb on + strand, within Pf1N1B4_805at 922.271 kb on + strand, within Pf1N1B4_805at 922.271 kb on + strand, within Pf1N1B4_805at 922.272 kb on - strand, within Pf1N1B4_805at 922.272 kb on - strand, within Pf1N1B4_805at 922.272 kb on - strand, within Pf1N1B4_805at 922.320 kb on - strand, within Pf1N1B4_805at 922.562 kb on - strandat 922.846 kb on + strandat 923.322 kb on - strand, within Pf1N1B4_806at 923.973 kb on + strand, within Pf1N1B4_806at 923.973 kb on + strand, within Pf1N1B4_806at 923.973 kb on + strandat 923.973 kb on + strand, within Pf1N1B4_806at 923.974 kb on - strandat 923.974 kb on - strand, within Pf1N1B4_806at 923.974 kb on - strand, within Pf1N1B4_806at 923.974 kb on - strand, within Pf1N1B4_806at 924.109 kb on - strand, within Pf1N1B4_806at 924.109 kb on - strand, within Pf1N1B4_806at 924.159 kb on + strand, within Pf1N1B4_806at 924.159 kb on + strand, within Pf1N1B4_806at 924.159 kb on + strand, within Pf1N1B4_806at 924.160 kb on - strand, within Pf1N1B4_806at 924.292 kb on - strand, within Pf1N1B4_806at 924.358 kb on + strandat 924.358 kb on + strandat 924.359 kb on - strandat 924.359 kb on - strandat 924.359 kb on - strandat 924.390 kb on + strandat 924.390 kb on + strandat 924.390 kb on + strandat 924.390 kb on + strandat 924.390 kb on + strandat 924.391 kb on - strandat 924.542 kb on - strandat 924.671 kb on - strandat 924.697 kb on + strandat 924.698 kb on - strandat 924.734 kb on + strandat 924.734 kb on + strandat 924.734 kb on + strandat 924.735 kb on - strandat 924.764 kb on + strandat 924.764 kb on + strand, within Pf1N1B4_807at 924.764 kb on + strand, within Pf1N1B4_807at 924.765 kb on - strand, within Pf1N1B4_807at 924.765 kb on - strand, within Pf1N1B4_807at 924.765 kb on - strand, within Pf1N1B4_807at 924.765 kb on - strand, within Pf1N1B4_807at 924.765 kb on - strand, within Pf1N1B4_807at 924.765 kb on - strand, within Pf1N1B4_807at 924.765 kb on - strand, within Pf1N1B4_807at 924.765 kb on - strand, within Pf1N1B4_807at 924.773 kb on + strandat 924.773 kb on + strand, within Pf1N1B4_807at 924.773 kb on + strand, within Pf1N1B4_807at 924.774 kb on - strand, within Pf1N1B4_807at 924.774 kb on - strand, within Pf1N1B4_807at 924.799 kb on + strand, within Pf1N1B4_807at 924.799 kb on + strand, within Pf1N1B4_807at 924.800 kb on - strandat 924.821 kb on + strand, within Pf1N1B4_807at 924.822 kb on - strand, within Pf1N1B4_807at 924.822 kb on - strand, within Pf1N1B4_807at 924.837 kb on - strand, within Pf1N1B4_807at 924.865 kb on + strand, within Pf1N1B4_807at 924.866 kb on - strand, within Pf1N1B4_807at 924.866 kb on - strand, within Pf1N1B4_807at 924.983 kb on + strand, within Pf1N1B4_807at 925.039 kb on - strand, within Pf1N1B4_807at 925.039 kb on - strand, within Pf1N1B4_807at 925.039 kb on - strand, within Pf1N1B4_807at 925.128 kb on + strandat 925.129 kb on - strand, within Pf1N1B4_807at 925.129 kb on - strand, within Pf1N1B4_807at 925.129 kb on - strand, within Pf1N1B4_807at 925.147 kb on - strand, within Pf1N1B4_807at 925.161 kb on + strand, within Pf1N1B4_807at 925.162 kb on - strand, within Pf1N1B4_807at 925.162 kb on - strand, within Pf1N1B4_807at 925.162 kb on - strand, within Pf1N1B4_807at 925.162 kb on - strand, within Pf1N1B4_807at 925.256 kb on + strand, within Pf1N1B4_807at 925.256 kb on + strand, within Pf1N1B4_807at 925.273 kb on - strandat 925.319 kb on + strandat 925.341 kb on - strandat 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strand, within Pf1N1B4_808at 925.433 kb on + strandat 925.434 kb on - strand, within Pf1N1B4_808at 925.434 kb on - strand, within Pf1N1B4_808at 925.434 kb on - strand, within Pf1N1B4_808at 925.434 kb on - strand, within Pf1N1B4_808at 925.434 kb on - strand, within Pf1N1B4_808

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.008 vol%
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921,824 + Pf1N1B4_805 0.46 +0.3
921,824 + Pf1N1B4_805 0.46 -1.2
921,824 + Pf1N1B4_805 0.46 +0.1
921,824 + Pf1N1B4_805 0.46 -1.2
921,825 - Pf1N1B4_805 0.46 +0.4
921,838 + Pf1N1B4_805 0.47 -1.3
921,839 - Pf1N1B4_805 0.47 +1.1
922,015 + Pf1N1B4_805 0.61 +0.1
922,016 - Pf1N1B4_805 0.61 -1.2
922,016 - Pf1N1B4_805 0.61 +2.1
922,127 - Pf1N1B4_805 0.69 -1.2
922,127 - Pf1N1B4_805 0.69 -0.5
922,149 + Pf1N1B4_805 0.71 +0.3
922,149 + Pf1N1B4_805 0.71 -0.3
922,149 + Pf1N1B4_805 0.71 -0.9
922,149 + Pf1N1B4_805 0.71 -0.5
922,149 + Pf1N1B4_805 0.71 +1.1
922,150 - Pf1N1B4_805 0.71 +1.1
922,271 + Pf1N1B4_805 0.81 +0.5
922,271 + Pf1N1B4_805 0.81 +0.7
922,271 + Pf1N1B4_805 0.81 -0.6
922,272 - Pf1N1B4_805 0.81 -1.2
922,272 - Pf1N1B4_805 0.81 -0.2
922,272 - Pf1N1B4_805 0.81 +0.3
922,320 - Pf1N1B4_805 0.85 +0.9
922,562 - -2.2
922,846 + -0.3
923,322 - Pf1N1B4_806 0.35 -0.5
923,973 + Pf1N1B4_806 0.71 -1.1
923,973 + Pf1N1B4_806 0.71 +0.5
923,973 + +1.1
923,973 + Pf1N1B4_806 0.71 -1.7
923,974 - +0.5
923,974 - Pf1N1B4_806 0.71 -0.3
923,974 - Pf1N1B4_806 0.71 -0.2
923,974 - Pf1N1B4_806 0.71 -1.5
924,109 - Pf1N1B4_806 0.79 -0.5
924,109 - Pf1N1B4_806 0.79 -1.7
924,159 + Pf1N1B4_806 0.82 +1.1
924,159 + Pf1N1B4_806 0.82 -0.3
924,159 + Pf1N1B4_806 0.82 -1.1
924,160 - Pf1N1B4_806 0.82 -0.5
924,292 - Pf1N1B4_806 0.89 -0.7
924,358 + +1.7
924,358 + +0.1
924,359 - -0.5
924,359 - +1.4
924,359 - -0.5
924,390 + +0.4
924,390 + +1.1
924,390 + -0.5
924,390 + +1.1
924,390 + -0.5
924,391 - +2.1
924,542 - +0.9
924,671 - +0.1
924,697 + +0.5
924,698 - +0.2
924,734 + +0.4
924,734 + -1.1
924,734 + -0.9
924,735 - +1.3
924,764 + +0.1
924,764 + Pf1N1B4_807 0.11 -0.6
924,764 + Pf1N1B4_807 0.11 +3.7
924,765 - Pf1N1B4_807 0.11 -0.3
924,765 - Pf1N1B4_807 0.11 +0.8
924,765 - Pf1N1B4_807 0.11 +0.4
924,765 - Pf1N1B4_807 0.11 +1.1
924,765 - Pf1N1B4_807 0.11 +2.0
924,765 - Pf1N1B4_807 0.11 -2.8
924,765 - Pf1N1B4_807 0.11 -0.9
924,765 - Pf1N1B4_807 0.11 -1.6
924,773 + +2.4
924,773 + Pf1N1B4_807 0.12 +1.1
924,773 + Pf1N1B4_807 0.12 -0.1
924,774 - Pf1N1B4_807 0.13 -1.5
924,774 - Pf1N1B4_807 0.13 -0.5
924,799 + Pf1N1B4_807 0.16 -1.5
924,799 + Pf1N1B4_807 0.16 -1.7
924,800 - +1.1
924,821 + Pf1N1B4_807 0.20 +0.1
924,822 - Pf1N1B4_807 0.20 +0.0
924,822 - Pf1N1B4_807 0.20 -0.9
924,837 - Pf1N1B4_807 0.22 +0.5
924,865 + Pf1N1B4_807 0.27 +2.4
924,866 - Pf1N1B4_807 0.27 +1.9
924,866 - Pf1N1B4_807 0.27 +2.0
924,983 + Pf1N1B4_807 0.45 +0.1
925,039 - Pf1N1B4_807 0.54 +2.1
925,039 - Pf1N1B4_807 0.54 -2.3
925,039 - Pf1N1B4_807 0.54 +0.1
925,128 + -0.9
925,129 - Pf1N1B4_807 0.68 +1.7
925,129 - Pf1N1B4_807 0.68 -0.0
925,129 - Pf1N1B4_807 0.68 +1.1
925,147 - Pf1N1B4_807 0.71 -1.1
925,161 + Pf1N1B4_807 0.73 -0.9
925,162 - Pf1N1B4_807 0.73 +0.1
925,162 - Pf1N1B4_807 0.73 -2.0
925,162 - Pf1N1B4_807 0.73 +0.3
925,162 - Pf1N1B4_807 0.73 -0.9
925,256 + Pf1N1B4_807 0.88 +2.1
925,256 + Pf1N1B4_807 0.88 +0.5
925,273 - -2.3
925,319 + +0.8
925,341 - -0.6
925,433 + Pf1N1B4_808 0.68 -2.2
925,433 + Pf1N1B4_808 0.68 +0.0
925,433 + Pf1N1B4_808 0.68 +0.1
925,433 + Pf1N1B4_808 0.68 +0.4
925,433 + Pf1N1B4_808 0.68 -1.5
925,433 + Pf1N1B4_808 0.68 -0.3
925,433 + Pf1N1B4_808 0.68 +0.7
925,433 + Pf1N1B4_808 0.68 -0.7
925,433 + Pf1N1B4_808 0.68 +0.1
925,433 + Pf1N1B4_808 0.68 +0.5
925,433 + Pf1N1B4_808 0.68 +0.4
925,433 + -1.5
925,434 - Pf1N1B4_808 0.69 +0.5
925,434 - Pf1N1B4_808 0.69 +0.1
925,434 - Pf1N1B4_808 0.69 -1.2
925,434 - Pf1N1B4_808 0.69 +0.1
925,434 - Pf1N1B4_808 0.69 +1.1

Or see this region's nucleotide sequence