Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_576

Experiment: methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_575 and Pf1N1B4_576 overlap by 6 nucleotidesPf1N1B4_576 and Pf1N1B4_577 are separated by 123 nucleotides Pf1N1B4_575 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 668,183 to 669,700 _575 Pf1N1B4_576 - hypothetical protein, at 669,695 to 669,835 _576 Pf1N1B4_577 - Lysophospholipase (EC 3.1.1.5); Monoglyceride lipase (EC 3.1.1.23); putative, at 669,959 to 670,903 _577 Position (kb) 669 670Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 668.809 kb on + strand, within Pf1N1B4_575at 668.809 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strandat 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.890 kb on - strand, within Pf1N1B4_575at 668.890 kb on - strand, within Pf1N1B4_575at 668.890 kb on - strand, within Pf1N1B4_575at 668.890 kb on - strand, within Pf1N1B4_575at 668.890 kb on - strand, within Pf1N1B4_575at 668.890 kb on - strandat 668.890 kb on - strand, within Pf1N1B4_575at 668.893 kb on + strand, within Pf1N1B4_575at 668.893 kb on + strand, within Pf1N1B4_575at 668.893 kb on + strand, within Pf1N1B4_575at 668.893 kb on + strand, within Pf1N1B4_575at 668.893 kb on + strand, within Pf1N1B4_575at 668.894 kb on - strand, within Pf1N1B4_575at 668.894 kb on - strand, within Pf1N1B4_575at 668.894 kb on - strand, within Pf1N1B4_575at 668.894 kb on - strandat 668.894 kb on - strand, within Pf1N1B4_575at 668.894 kb on - strand, within Pf1N1B4_575at 668.894 kb on - strand, within Pf1N1B4_575at 668.894 kb on - strand, within Pf1N1B4_575at 668.894 kb on - strand, within Pf1N1B4_575at 668.894 kb on - strand, within Pf1N1B4_575at 668.894 kb on - strand, within Pf1N1B4_575at 668.894 kb on - strand, within Pf1N1B4_575at 668.894 kb on - strand, within Pf1N1B4_575at 668.899 kb on - strand, within Pf1N1B4_575at 668.899 kb on - strand, within Pf1N1B4_575at 668.899 kb on - strand, within Pf1N1B4_575at 669.060 kb on + strand, within Pf1N1B4_575at 669.149 kb on - strand, within Pf1N1B4_575at 669.149 kb on - strand, within Pf1N1B4_575at 669.149 kb on - strand, within Pf1N1B4_575at 669.166 kb on - strand, within Pf1N1B4_575at 669.166 kb on - strand, within Pf1N1B4_575at 669.202 kb on + strand, within Pf1N1B4_575at 669.319 kb on - strand, within Pf1N1B4_575at 669.376 kb on - strand, within Pf1N1B4_575at 669.376 kb on - strand, within Pf1N1B4_575at 669.547 kb on - strand, within Pf1N1B4_575at 669.547 kb on - strand, within Pf1N1B4_575at 669.547 kb on - strandat 669.631 kb on + strandat 669.631 kb on + strandat 669.632 kb on - strandat 669.632 kb on - strandat 669.632 kb on - strandat 669.632 kb on - strandat 669.633 kb on + strandat 669.633 kb on + strandat 669.633 kb on + strandat 669.633 kb on + strandat 669.633 kb on + strandat 669.633 kb on + strandat 669.633 kb on + strandat 669.634 kb on - strandat 669.634 kb on - strandat 669.716 kb on + strandat 669.716 kb on + strand, within Pf1N1B4_576at 669.790 kb on + strand, within Pf1N1B4_576at 669.797 kb on + strand, within Pf1N1B4_576at 669.797 kb on + strand, within Pf1N1B4_576at 669.797 kb on + strand, within Pf1N1B4_576at 669.798 kb on - strand, within Pf1N1B4_576at 669.798 kb on - strand, within Pf1N1B4_576at 669.798 kb on - strand, within Pf1N1B4_576at 669.815 kb on + strand, within Pf1N1B4_576at 669.815 kb on + strand, within Pf1N1B4_576at 669.816 kb on - strand, within Pf1N1B4_576at 669.816 kb on - strand, within Pf1N1B4_576at 669.816 kb on - strand, within Pf1N1B4_576at 669.878 kb on - strandat 669.896 kb on + strandat 669.896 kb on + strandat 669.896 kb on + strandat 669.896 kb on + strandat 669.896 kb on + strandat 669.896 kb on + strandat 669.896 kb on + strandat 669.896 kb on + strandat 669.896 kb on + strandat 669.896 kb on + strandat 669.897 kb on - strandat 669.897 kb on - strandat 669.897 kb on - strandat 669.897 kb on - strandat 669.897 kb on - strandat 669.897 kb on - strandat 670.125 kb on - strand, within Pf1N1B4_577at 670.133 kb on + strand, within Pf1N1B4_577at 670.133 kb on + strand, within Pf1N1B4_577at 670.133 kb on + strand, within Pf1N1B4_577at 670.146 kb on + strand, within Pf1N1B4_577at 670.146 kb on + strand, within Pf1N1B4_577at 670.147 kb on - strandat 670.147 kb on - strand, within Pf1N1B4_577at 670.147 kb on - strand, within Pf1N1B4_577at 670.282 kb on - strand, within Pf1N1B4_577at 670.282 kb on - strand, within Pf1N1B4_577at 670.307 kb on + strand, within Pf1N1B4_577at 670.307 kb on + strand, within Pf1N1B4_577at 670.308 kb on - strand, within Pf1N1B4_577at 670.308 kb on - strand, within Pf1N1B4_577at 670.322 kb on + strand, within Pf1N1B4_577at 670.322 kb on + strand, within Pf1N1B4_577at 670.322 kb on + strand, within Pf1N1B4_577at 670.323 kb on - strandat 670.323 kb on - strand, within Pf1N1B4_577at 670.559 kb on + strand, within Pf1N1B4_577at 670.559 kb on + strand, within Pf1N1B4_577at 670.559 kb on + strand, within Pf1N1B4_577at 670.560 kb on - strand, within Pf1N1B4_577at 670.783 kb on + strand, within Pf1N1B4_577at 670.783 kb on + strand, within Pf1N1B4_577at 670.783 kb on + strand, within Pf1N1B4_577

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.008 vol%
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668,809 + Pf1N1B4_575 0.41 +1.1
668,809 + Pf1N1B4_575 0.41 +0.0
668,889 + -0.6
668,889 + Pf1N1B4_575 0.47 -1.0
668,889 + Pf1N1B4_575 0.47 -0.8
668,889 + Pf1N1B4_575 0.47 +1.4
668,889 + Pf1N1B4_575 0.47 +3.0
668,889 + Pf1N1B4_575 0.47 -0.6
668,889 + Pf1N1B4_575 0.47 +0.0
668,889 + Pf1N1B4_575 0.47 +0.0
668,889 + Pf1N1B4_575 0.47 +0.0
668,889 + Pf1N1B4_575 0.47 +0.5
668,889 + Pf1N1B4_575 0.47 -0.6
668,889 + Pf1N1B4_575 0.47 +0.3
668,889 + Pf1N1B4_575 0.47 +0.4
668,889 + Pf1N1B4_575 0.47 -1.3
668,889 + Pf1N1B4_575 0.47 +1.0
668,890 - Pf1N1B4_575 0.47 -1.7
668,890 - Pf1N1B4_575 0.47 +2.0
668,890 - Pf1N1B4_575 0.47 +0.4
668,890 - Pf1N1B4_575 0.47 +0.2
668,890 - Pf1N1B4_575 0.47 +0.2
668,890 - -0.6
668,890 - Pf1N1B4_575 0.47 +1.3
668,893 + Pf1N1B4_575 0.47 -2.0
668,893 + Pf1N1B4_575 0.47 -0.3
668,893 + Pf1N1B4_575 0.47 -0.6
668,893 + Pf1N1B4_575 0.47 -0.7
668,893 + Pf1N1B4_575 0.47 +0.2
668,894 - Pf1N1B4_575 0.47 +0.6
668,894 - Pf1N1B4_575 0.47 -0.6
668,894 - Pf1N1B4_575 0.47 -0.2
668,894 - +1.0
668,894 - Pf1N1B4_575 0.47 -1.8
668,894 - Pf1N1B4_575 0.47 +0.6
668,894 - Pf1N1B4_575 0.47 -1.6
668,894 - Pf1N1B4_575 0.47 +0.6
668,894 - Pf1N1B4_575 0.47 -0.2
668,894 - Pf1N1B4_575 0.47 -0.2
668,894 - Pf1N1B4_575 0.47 +0.3
668,894 - Pf1N1B4_575 0.47 -0.2
668,894 - Pf1N1B4_575 0.47 -1.0
668,899 - Pf1N1B4_575 0.47 +0.5
668,899 - Pf1N1B4_575 0.47 -0.3
668,899 - Pf1N1B4_575 0.47 -1.0
669,060 + Pf1N1B4_575 0.58 +0.5
669,149 - Pf1N1B4_575 0.64 -1.8
669,149 - Pf1N1B4_575 0.64 +1.6
669,149 - Pf1N1B4_575 0.64 +0.2
669,166 - Pf1N1B4_575 0.65 -0.3
669,166 - Pf1N1B4_575 0.65 -0.9
669,202 + Pf1N1B4_575 0.67 -0.6
669,319 - Pf1N1B4_575 0.75 +1.0
669,376 - Pf1N1B4_575 0.79 -1.3
669,376 - Pf1N1B4_575 0.79 -0.6
669,547 - Pf1N1B4_575 0.90 +2.5
669,547 - Pf1N1B4_575 0.90 +1.3
669,547 - +1.0
669,631 + +0.6
669,631 + -0.7
669,632 - +0.7
669,632 - +1.4
669,632 - +1.2
669,632 - +0.0
669,633 + +0.3
669,633 + +0.5
669,633 + -1.6
669,633 + -1.0
669,633 + -1.0
669,633 + +0.3
669,633 + -1.6
669,634 - +1.0
669,634 - +1.3
669,716 + +1.0
669,716 + Pf1N1B4_576 0.15 +0.3
669,790 + Pf1N1B4_576 0.67 -0.5
669,797 + Pf1N1B4_576 0.72 -0.7
669,797 + Pf1N1B4_576 0.72 +0.4
669,797 + Pf1N1B4_576 0.72 -1.8
669,798 - Pf1N1B4_576 0.73 -1.1
669,798 - Pf1N1B4_576 0.73 -1.0
669,798 - Pf1N1B4_576 0.73 -2.6
669,815 + Pf1N1B4_576 0.85 +1.4
669,815 + Pf1N1B4_576 0.85 -2.3
669,816 - Pf1N1B4_576 0.86 +0.0
669,816 - Pf1N1B4_576 0.86 -1.8
669,816 - Pf1N1B4_576 0.86 +0.4
669,878 - +1.7
669,896 + +1.0
669,896 + +0.4
669,896 + +0.0
669,896 + +0.2
669,896 + -1.0
669,896 + +0.6
669,896 + -0.6
669,896 + -1.2
669,896 + -2.2
669,896 + -1.3
669,897 - +0.0
669,897 - +1.0
669,897 - -1.3
669,897 - +0.0
669,897 - +0.4
669,897 - +0.5
670,125 - Pf1N1B4_577 0.18 +0.0
670,133 + Pf1N1B4_577 0.18 -1.6
670,133 + Pf1N1B4_577 0.18 +0.0
670,133 + Pf1N1B4_577 0.18 -0.6
670,146 + Pf1N1B4_577 0.20 +1.0
670,146 + Pf1N1B4_577 0.20 -1.3
670,147 - +0.6
670,147 - Pf1N1B4_577 0.20 -1.0
670,147 - Pf1N1B4_577 0.20 +1.0
670,282 - Pf1N1B4_577 0.34 -2.0
670,282 - Pf1N1B4_577 0.34 -2.3
670,307 + Pf1N1B4_577 0.37 +0.4
670,307 + Pf1N1B4_577 0.37 +0.3
670,308 - Pf1N1B4_577 0.37 -0.6
670,308 - Pf1N1B4_577 0.37 -1.6
670,322 + Pf1N1B4_577 0.38 +0.4
670,322 + Pf1N1B4_577 0.38 -0.8
670,322 + Pf1N1B4_577 0.38 -2.9
670,323 - +0.0
670,323 - Pf1N1B4_577 0.39 +0.7
670,559 + Pf1N1B4_577 0.63 -0.8
670,559 + Pf1N1B4_577 0.63 -1.3
670,559 + Pf1N1B4_577 0.63 -1.3
670,560 - Pf1N1B4_577 0.64 +1.7
670,783 + Pf1N1B4_577 0.87 +1.0
670,783 + Pf1N1B4_577 0.87 -1.0
670,783 + Pf1N1B4_577 0.87 -2.2

Or see this region's nucleotide sequence