Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3888

Experiment: methylglyoxal 0.008 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.008 vol%
4,316,183	-		Pf1N1B4_3887	0.24	+2.2
4,316,243	+		Pf1N1B4_3887	0.32	+0.2
4,316,243	+		Pf1N1B4_3887	0.32	-1.5
4,316,498	+		Pf1N1B4_3887	0.64	-0.8
4,316,499	-		Pf1N1B4_3887	0.64	-1.0
4,316,527	-		Pf1N1B4_3887	0.68	+0.5
4,316,625	-				+0.2
4,316,717	+				-0.2
4,316,717	+				-0.6
4,316,759	+				-0.3
4,316,759	+				+0.8
4,316,760	-				+0.1
4,316,760	-				-0.8
4,316,955	-				+0.7
4,316,955	-				+0.3
4,316,956	+				+3.6
4,316,956	+				+0.1
4,316,956	+				-2.2
4,316,957	-				+0.3
4,316,957	-				+0.2
4,316,957	-				-0.5
4,316,957	-				-0.4
4,316,957	-				+0.3
4,316,957	-				+1.5
4,316,957	-				+0.6
4,316,957	-				+1.5
4,316,957	-				+1.0
4,316,957	-				+0.8
4,316,964	+				-0.5
4,316,964	+				-0.8
4,316,964	+				+1.2
4,316,964	+				+1.4
4,316,964	+				+1.4
4,316,964	+				+1.5
4,316,964	+				-0.8
4,316,964	+				-0.8
4,316,965	-				+0.8
4,316,965	-				-0.6
4,316,965	-				+0.9
4,316,965	-				+0.1
4,316,965	-				+0.3
4,316,965	-				-0.6
4,316,965	-				+0.4
4,316,965	-				-1.8
4,316,965	-				+1.4
4,316,965	-				+0.9
4,316,965	-				+0.4
4,316,965	-				-1.4
4,316,965	-				+0.5
4,316,965	-				-0.5
4,316,965	-				+0.4
4,316,965	-				+0.3
4,316,967	-				+0.3
4,316,967	-				+1.4
4,316,974	-				+0.9
4,317,046	+				-0.2
4,317,046	+				-1.2
4,317,046	+				+0.6
4,317,046	+				+0.2
4,317,046	+				+0.2
4,317,047	-				+0.0
4,317,047	-				-0.1
4,317,047	-				-1.4
4,317,047	-				-0.3
4,317,047	-				-1.1
4,317,047	-				+0.0
4,317,047	-				+0.8
4,317,047	-				+0.8
4,317,073	+				-2.0
4,317,073	+				-0.2
4,317,074	-				-0.2
4,317,074	-				-1.2
4,317,074	-				+0.8
4,317,270	+				+1.4
4,317,270	+				+0.9
4,317,270	+				+0.2
4,317,270	+				+0.5
4,317,271	-				-0.2
4,317,388	+		Pf1N1B4_3888	0.13	-2.3
4,317,389	-		Pf1N1B4_3888	0.14	+0.4
4,317,451	+		Pf1N1B4_3888	0.16	-1.5
4,317,451	+		Pf1N1B4_3888	0.16	+0.4
4,317,452	-		Pf1N1B4_3888	0.16	-2.4
4,317,479	+		Pf1N1B4_3888	0.17	-1.3
4,317,479	+		Pf1N1B4_3888	0.17	+1.1
4,317,479	+				-0.2
4,317,479	+		Pf1N1B4_3888	0.17	+1.0
4,317,481	+		Pf1N1B4_3888	0.17	+1.1
4,317,482	-				-0.2
4,317,482	-				+2.4
4,317,482	-		Pf1N1B4_3888	0.17	+1.3
4,317,482	-		Pf1N1B4_3888	0.17	+0.4
4,317,482	-		Pf1N1B4_3888	0.17	+1.7
4,317,482	-		Pf1N1B4_3888	0.17	-1.1
4,317,482	-		Pf1N1B4_3888	0.17	+0.8
4,317,786	-		Pf1N1B4_3888	0.28	+0.8
4,317,787	+		Pf1N1B4_3888	0.28	-1.0
4,317,787	+		Pf1N1B4_3888	0.28	+0.0
4,317,787	+		Pf1N1B4_3888	0.28	+1.3
4,317,787	+				+2.4
4,317,787	+		Pf1N1B4_3888	0.28	+0.5
4,317,787	+		Pf1N1B4_3888	0.28	+0.5
4,317,787	+		Pf1N1B4_3888	0.28	-1.8
4,317,787	+		Pf1N1B4_3888	0.28	-1.5
4,317,787	+		Pf1N1B4_3888	0.28	-1.2
4,317,788	-				-0.2
4,317,788	-				+0.5
4,317,788	-		Pf1N1B4_3888	0.28	+1.1
4,317,788	-				+0.8
4,317,788	-		Pf1N1B4_3888	0.28	+0.8
4,317,788	-		Pf1N1B4_3888	0.28	+0.8
4,317,811	+		Pf1N1B4_3888	0.29	+0.2
4,317,811	+		Pf1N1B4_3888	0.29	+0.5
4,317,811	+		Pf1N1B4_3888	0.29	-1.4
4,317,811	+		Pf1N1B4_3888	0.29	-1.0
4,317,812	-		Pf1N1B4_3888	0.29	+0.0
4,317,812	-		Pf1N1B4_3888	0.29	+1.2
4,317,812	-		Pf1N1B4_3888	0.29	-0.0
4,317,812	-				-0.2
4,317,812	-		Pf1N1B4_3888	0.29	+0.8
4,317,945	-		Pf1N1B4_3888	0.34	+0.8
4,317,945	-		Pf1N1B4_3888	0.34	+2.8
4,317,945	-		Pf1N1B4_3888	0.34	-1.5
4,317,956	-		Pf1N1B4_3888	0.34	-0.0
4,318,240	+		Pf1N1B4_3888	0.45	+1.6
4,318,241	-		Pf1N1B4_3888	0.45	+0.8
4,318,264	+		Pf1N1B4_3888	0.45	-0.1
4,318,264	+		Pf1N1B4_3888	0.45	+0.8
4,318,264	+		Pf1N1B4_3888	0.45	-2.0
4,318,264	+				-0.2
4,318,267	+		Pf1N1B4_3888	0.46	+0.8
4,318,267	+		Pf1N1B4_3888	0.46	-1.2
4,318,268	-		Pf1N1B4_3888	0.46	-1.4
4,318,268	-		Pf1N1B4_3888	0.46	+0.0
4,318,268	-		Pf1N1B4_3888	0.46	-0.8
4,318,268	-		Pf1N1B4_3888	0.46	-1.8
4,318,444	+		Pf1N1B4_3888	0.52	+0.1
4,318,448	+		Pf1N1B4_3888	0.52	+0.1
4,318,448	+		Pf1N1B4_3888	0.52	-1.5
4,318,448	+		Pf1N1B4_3888	0.52	+0.4
4,318,448	+		Pf1N1B4_3888	0.52	+2.2
4,318,449	-		Pf1N1B4_3888	0.52	+1.5
4,318,449	-		Pf1N1B4_3888	0.52	+0.8
4,318,449	-		Pf1N1B4_3888	0.52	+0.8
4,318,449	-		Pf1N1B4_3888	0.52	-1.2
4,318,449	-		Pf1N1B4_3888	0.52	-2.0
4,318,449	-		Pf1N1B4_3888	0.52	-1.6
4,318,730	+		Pf1N1B4_3888	0.62	+1.2
4,318,730	+		Pf1N1B4_3888	0.62	+0.8
4,318,730	+				+0.8
4,318,731	-		Pf1N1B4_3888	0.62	-1.8
4,318,731	-		Pf1N1B4_3888	0.62	-0.2
4,318,732	+		Pf1N1B4_3888	0.63	+0.4
4,318,733	-		Pf1N1B4_3888	0.63	+0.2
4,318,733	-				+2.5
4,318,733	-		Pf1N1B4_3888	0.63	+0.2
4,318,784	-		Pf1N1B4_3888	0.64	+1.5
4,319,155	+		Pf1N1B4_3888	0.78	-0.4
4,319,155	+		Pf1N1B4_3888	0.78	+0.2
4,319,155	+		Pf1N1B4_3888	0.78	+0.8
4,319,155	+		Pf1N1B4_3888	0.78	+0.4
4,319,155	+		Pf1N1B4_3888	0.78	+1.9
4,319,155	+		Pf1N1B4_3888	0.78	+0.8
4,319,156	-		Pf1N1B4_3888	0.78	-0.1
4,319,156	-		Pf1N1B4_3888	0.78	-0.5
4,319,156	-		Pf1N1B4_3888	0.78	-0.5
4,319,156	-		Pf1N1B4_3888	0.78	-1.6
4,319,156	-		Pf1N1B4_3888	0.78	+0.2
4,319,156	-		Pf1N1B4_3888	0.78	-2.2
4,319,156	-		Pf1N1B4_3888	0.78	-2.7
4,319,201	-		Pf1N1B4_3888	0.80	+2.0
4,319,201	-		Pf1N1B4_3888	0.80	+0.8
4,319,259	-		Pf1N1B4_3888	0.82	-0.2
4,319,353	+				+0.8
4,319,353	+		Pf1N1B4_3888	0.85	+2.4
4,319,354	-		Pf1N1B4_3888	0.85	-1.0
4,319,354	-		Pf1N1B4_3888	0.85	-0.8
4,319,502	+				+0.2
4,319,701	+				-0.2
4,319,701	+				+1.5
4,319,701	+				+0.4
4,319,702	-				+1.9
4,319,721	+				+0.4
4,319,722	-				-0.8
4,319,774	+				+0.5
4,319,774	+				-2.4
4,319,774	+				-1.0
4,319,775	-				-1.0
4,319,816	-				-0.9
4,319,816	-				-0.2
4,319,831	+				+0.8
4,319,833	+				+0.3
4,319,833	+				+0.0
4,319,833	+				-1.7
4,319,834	-				-0.7
4,319,847	+		Pf1N1B4_3889	0.15	-0.2
4,319,859	-		Pf1N1B4_3889	0.21	-2.9
4,319,977	+		Pf1N1B4_3889	0.86	+1.4
4,319,977	+		Pf1N1B4_3889	0.86	-0.8
4,319,996	+				-1.8