Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3773

Experiment: methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3771 and Pf1N1B4_3772 are separated by 195 nucleotidesPf1N1B4_3772 and Pf1N1B4_3773 are separated by 102 nucleotidesPf1N1B4_3773 and Pf1N1B4_3774 are separated by 77 nucleotidesPf1N1B4_3774 and Pf1N1B4_3775 are separated by 75 nucleotides Pf1N1B4_3771 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 4,181,685 to 4,182,851 _3771 Pf1N1B4_3772 - Glutaredoxin, at 4,183,047 to 4,183,418 _3772 Pf1N1B4_3773 - GTP cyclohydrolase I (EC 3.5.4.16) type 1, at 4,183,521 to 4,184,066 _3773 Pf1N1B4_3774 - Smr domain protein, at 4,184,144 to 4,184,701 _3774 Pf1N1B4_3775 - FIG00956876: hypothetical protein, at 4,184,777 to 4,185,097 _3775 Position (kb) 4183 4184 4185Strain fitness (log2 ratio) -2 -1 0 1 2at 4182.869 kb on + strandat 4182.892 kb on - strandat 4182.982 kb on + strandat 4182.983 kb on - strandat 4182.983 kb on - strandat 4182.987 kb on + strandat 4182.988 kb on - strandat 4182.988 kb on - strandat 4182.988 kb on - strandat 4182.988 kb on - strandat 4183.099 kb on + strand, within Pf1N1B4_3772at 4183.099 kb on + strand, within Pf1N1B4_3772at 4183.099 kb on + strand, within Pf1N1B4_3772at 4183.099 kb on + strand, within Pf1N1B4_3772at 4183.100 kb on - strand, within Pf1N1B4_3772at 4183.100 kb on - strand, within Pf1N1B4_3772at 4183.100 kb on - strand, within Pf1N1B4_3772at 4183.100 kb on - strandat 4183.100 kb on - strand, within Pf1N1B4_3772at 4183.100 kb on - strand, within Pf1N1B4_3772at 4183.100 kb on - strand, within Pf1N1B4_3772at 4183.100 kb on - strand, within Pf1N1B4_3772at 4183.100 kb on - strand, within Pf1N1B4_3772at 4183.100 kb on - strand, within Pf1N1B4_3772at 4183.100 kb on - strand, within Pf1N1B4_3772at 4183.282 kb on + strand, within Pf1N1B4_3772at 4183.421 kb on + strandat 4183.421 kb on + strandat 4183.421 kb on + strandat 4183.421 kb on + strandat 4183.421 kb on + strandat 4183.421 kb on + strandat 4183.421 kb on + strandat 4183.421 kb on + strandat 4183.421 kb on + strandat 4183.421 kb on + strandat 4183.421 kb on + strandat 4183.422 kb on - strandat 4183.422 kb on - strandat 4183.422 kb on - strandat 4183.422 kb on - strandat 4183.422 kb on - strandat 4183.422 kb on - strandat 4183.422 kb on - strandat 4183.422 kb on - strandat 4183.423 kb on + strandat 4183.423 kb on + strandat 4183.423 kb on + strandat 4183.458 kb on - strandat 4183.459 kb on - strandat 4183.522 kb on + strandat 4184.187 kb on + strandat 4184.331 kb on - strand, within Pf1N1B4_3774at 4184.331 kb on - strand, within Pf1N1B4_3774at 4184.872 kb on - strand, within Pf1N1B4_3775at 4184.872 kb on - strand, within Pf1N1B4_3775at 4184.872 kb on - strand, within Pf1N1B4_3775

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.008 vol%
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4,182,869 + -1.0
4,182,892 - +1.0
4,182,982 + +0.2
4,182,983 - +1.6
4,182,983 - +0.7
4,182,987 + +0.2
4,182,988 - -0.2
4,182,988 - +0.1
4,182,988 - +0.8
4,182,988 - +1.4
4,183,099 + Pf1N1B4_3772 0.14 +0.0
4,183,099 + Pf1N1B4_3772 0.14 -2.3
4,183,099 + Pf1N1B4_3772 0.14 +0.1
4,183,099 + Pf1N1B4_3772 0.14 -0.8
4,183,100 - Pf1N1B4_3772 0.14 +1.0
4,183,100 - Pf1N1B4_3772 0.14 +2.4
4,183,100 - Pf1N1B4_3772 0.14 +1.4
4,183,100 - +0.8
4,183,100 - Pf1N1B4_3772 0.14 -1.8
4,183,100 - Pf1N1B4_3772 0.14 +0.2
4,183,100 - Pf1N1B4_3772 0.14 +0.8
4,183,100 - Pf1N1B4_3772 0.14 +0.6
4,183,100 - Pf1N1B4_3772 0.14 +1.2
4,183,100 - Pf1N1B4_3772 0.14 -0.2
4,183,100 - Pf1N1B4_3772 0.14 +0.5
4,183,282 + Pf1N1B4_3772 0.63 +0.4
4,183,421 + +0.0
4,183,421 + +1.1
4,183,421 + -0.0
4,183,421 + +1.0
4,183,421 + +1.1
4,183,421 + -2.0
4,183,421 + +0.8
4,183,421 + -0.5
4,183,421 + +0.6
4,183,421 + +0.6
4,183,421 + -0.8
4,183,422 - -0.4
4,183,422 - -1.8
4,183,422 - -0.7
4,183,422 - +0.8
4,183,422 - -0.5
4,183,422 - +0.0
4,183,422 - +0.2
4,183,422 - +1.4
4,183,423 + +0.0
4,183,423 + +0.6
4,183,423 + +0.8
4,183,458 - -0.5
4,183,459 - -0.8
4,183,522 + -1.8
4,184,187 + -1.2
4,184,331 - Pf1N1B4_3774 0.34 +1.0
4,184,331 - Pf1N1B4_3774 0.34 +0.4
4,184,872 - Pf1N1B4_3775 0.30 -1.8
4,184,872 - Pf1N1B4_3775 0.30 -0.5
4,184,872 - Pf1N1B4_3775 0.30 -0.4

Or see this region's nucleotide sequence