Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_160

Experiment: methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_158 and Pf1N1B4_159 are separated by 26 nucleotidesPf1N1B4_159 and Pf1N1B4_160 are separated by 89 nucleotidesPf1N1B4_160 and Pf1N1B4_161 are separated by 198 nucleotidesPf1N1B4_161 and Pf1N1B4_162 are separated by 177 nucleotides Pf1N1B4_158 - FIG00456158: hypothetical protein, at 200,783 to 201,112 _158 Pf1N1B4_159 - Putative threonine efflux protein, at 201,139 to 201,768 _159 Pf1N1B4_160 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 201,858 to 203,183 _160 Pf1N1B4_161 - hypothetical protein, at 203,382 to 203,504 _161 Pf1N1B4_162 - Aha1 domain superfamily, at 203,682 to 204,170 _162 Position (kb) 201 202 203 204Strain fitness (log2 ratio) -2 -1 0 1 2at 200.935 kb on + strand, within Pf1N1B4_158at 200.935 kb on + strand, within Pf1N1B4_158at 200.956 kb on - strandat 200.959 kb on - strand, within Pf1N1B4_158at 200.959 kb on - strand, within Pf1N1B4_158at 200.959 kb on - strand, within Pf1N1B4_158at 201.090 kb on + strandat 201.091 kb on - strandat 201.095 kb on - strandat 201.108 kb on + strandat 201.108 kb on + strandat 201.108 kb on + strandat 201.108 kb on + strandat 201.108 kb on + strandat 201.109 kb on - strandat 201.109 kb on - strandat 201.231 kb on + strandat 201.255 kb on + strand, within Pf1N1B4_159at 201.256 kb on - strand, within Pf1N1B4_159at 201.392 kb on - strand, within Pf1N1B4_159at 201.665 kb on + strand, within Pf1N1B4_159at 201.666 kb on - strand, within Pf1N1B4_159at 201.797 kb on - strandat 201.797 kb on - strandat 201.801 kb on + strandat 201.801 kb on + strandat 201.840 kb on + strandat 202.002 kb on + strand, within Pf1N1B4_160at 202.003 kb on - strandat 202.168 kb on + strand, within Pf1N1B4_160at 202.169 kb on - strand, within Pf1N1B4_160at 202.280 kb on - strand, within Pf1N1B4_160at 202.280 kb on - strand, within Pf1N1B4_160at 202.407 kb on + strand, within Pf1N1B4_160at 202.534 kb on - strand, within Pf1N1B4_160at 202.647 kb on + strand, within Pf1N1B4_160at 202.648 kb on - strand, within Pf1N1B4_160at 202.685 kb on + strand, within Pf1N1B4_160at 202.685 kb on + strand, within Pf1N1B4_160at 202.686 kb on - strand, within Pf1N1B4_160at 202.686 kb on - strand, within Pf1N1B4_160at 202.710 kb on + strand, within Pf1N1B4_160at 202.710 kb on + strand, within Pf1N1B4_160at 202.711 kb on - strand, within Pf1N1B4_160at 202.711 kb on - strand, within Pf1N1B4_160at 202.711 kb on - strand, within Pf1N1B4_160at 202.711 kb on - strand, within Pf1N1B4_160at 202.711 kb on - strand, within Pf1N1B4_160at 202.711 kb on - strand, within Pf1N1B4_160at 202.711 kb on - strand, within Pf1N1B4_160at 202.711 kb on - strand, within Pf1N1B4_160at 202.711 kb on - strandat 202.711 kb on - strand, within Pf1N1B4_160at 202.711 kb on - strand, within Pf1N1B4_160at 202.713 kb on - strand, within Pf1N1B4_160at 202.772 kb on + strand, within Pf1N1B4_160at 202.773 kb on - strand, within Pf1N1B4_160at 202.773 kb on - strand, within Pf1N1B4_160at 202.773 kb on - strand, within Pf1N1B4_160at 202.773 kb on - strand, within Pf1N1B4_160at 202.977 kb on + strand, within Pf1N1B4_160at 202.978 kb on - strand, within Pf1N1B4_160at 202.978 kb on - strand, within Pf1N1B4_160at 202.980 kb on + strand, within Pf1N1B4_160at 202.980 kb on + strand, within Pf1N1B4_160at 202.980 kb on + strand, within Pf1N1B4_160at 202.980 kb on + strand, within Pf1N1B4_160at 202.981 kb on - strand, within Pf1N1B4_160at 202.981 kb on - strand, within Pf1N1B4_160at 203.008 kb on + strandat 203.043 kb on - strand, within Pf1N1B4_160at 203.269 kb on + strandat 203.327 kb on + strandat 203.328 kb on - strandat 203.328 kb on - strandat 203.359 kb on + strandat 203.359 kb on + strandat 203.360 kb on - strandat 203.360 kb on - strandat 203.360 kb on - strandat 203.369 kb on + strandat 203.370 kb on - strandat 203.375 kb on + strandat 203.375 kb on + strandat 203.376 kb on - strandat 203.487 kb on - strand, within Pf1N1B4_161at 203.540 kb on + strandat 203.540 kb on + strandat 203.541 kb on - strandat 203.541 kb on - strandat 203.541 kb on - strandat 203.541 kb on - strandat 203.541 kb on - strandat 203.541 kb on - strandat 203.577 kb on + strandat 203.578 kb on - strandat 203.578 kb on - strandat 203.578 kb on - strandat 203.578 kb on - strandat 203.578 kb on - strandat 203.578 kb on - strandat 203.578 kb on - strandat 203.578 kb on - strandat 203.578 kb on - strandat 203.578 kb on - strandat 203.578 kb on - strandat 203.578 kb on - strandat 203.578 kb on - strandat 203.578 kb on - strandat 203.578 kb on - strandat 203.578 kb on - strandat 203.578 kb on - strandat 203.581 kb on + strandat 203.582 kb on - strandat 203.582 kb on - strandat 203.582 kb on - strandat 203.582 kb on - strandat 203.582 kb on - strandat 203.582 kb on - strandat 203.593 kb on + strandat 203.594 kb on - strandat 203.594 kb on - strandat 203.607 kb on + strandat 203.635 kb on + strandat 203.636 kb on - strandat 203.636 kb on - strandat 203.985 kb on + strand, within Pf1N1B4_162at 203.986 kb on - strand, within Pf1N1B4_162at 203.986 kb on - strand, within Pf1N1B4_162at 204.047 kb on + strand, within Pf1N1B4_162at 204.170 kb on + strandat 204.170 kb on + strandat 204.170 kb on + strandat 204.170 kb on + strandat 204.170 kb on + strandat 204.171 kb on - strandat 204.171 kb on - strandat 204.171 kb on - strandat 204.171 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.008 vol%
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200,935 + Pf1N1B4_158 0.46 -0.6
200,935 + Pf1N1B4_158 0.46 -1.0
200,956 - +1.7
200,959 - Pf1N1B4_158 0.53 +0.6
200,959 - Pf1N1B4_158 0.53 +1.2
200,959 - Pf1N1B4_158 0.53 -0.1
201,090 + +0.0
201,091 - +0.6
201,095 - +0.7
201,108 + -1.3
201,108 + -2.6
201,108 + -0.4
201,108 + -2.4
201,108 + +0.8
201,109 - +0.7
201,109 - -0.1
201,231 + -1.3
201,255 + Pf1N1B4_159 0.18 -0.5
201,256 - Pf1N1B4_159 0.19 +0.7
201,392 - Pf1N1B4_159 0.40 -0.3
201,665 + Pf1N1B4_159 0.83 +0.5
201,666 - Pf1N1B4_159 0.84 -0.3
201,797 - -0.3
201,797 - +0.5
201,801 + -0.6
201,801 + +0.3
201,840 + +1.7
202,002 + Pf1N1B4_160 0.11 -0.2
202,003 - +2.0
202,168 + Pf1N1B4_160 0.23 +0.9
202,169 - Pf1N1B4_160 0.23 +1.0
202,280 - Pf1N1B4_160 0.32 -0.6
202,280 - Pf1N1B4_160 0.32 +0.9
202,407 + Pf1N1B4_160 0.41 -0.5
202,534 - Pf1N1B4_160 0.51 -0.8
202,647 + Pf1N1B4_160 0.60 +0.0
202,648 - Pf1N1B4_160 0.60 -0.6
202,685 + Pf1N1B4_160 0.62 -1.3
202,685 + Pf1N1B4_160 0.62 -1.8
202,686 - Pf1N1B4_160 0.62 -1.2
202,686 - Pf1N1B4_160 0.62 -0.7
202,710 + Pf1N1B4_160 0.64 +0.3
202,710 + Pf1N1B4_160 0.64 +1.1
202,711 - Pf1N1B4_160 0.64 +1.2
202,711 - Pf1N1B4_160 0.64 -2.6
202,711 - Pf1N1B4_160 0.64 -1.6
202,711 - Pf1N1B4_160 0.64 -1.3
202,711 - Pf1N1B4_160 0.64 +0.2
202,711 - Pf1N1B4_160 0.64 +0.1
202,711 - Pf1N1B4_160 0.64 +0.7
202,711 - Pf1N1B4_160 0.64 -0.6
202,711 - +0.2
202,711 - Pf1N1B4_160 0.64 +0.3
202,711 - Pf1N1B4_160 0.64 +0.2
202,713 - Pf1N1B4_160 0.64 +0.6
202,772 + Pf1N1B4_160 0.69 +0.3
202,773 - Pf1N1B4_160 0.69 +0.1
202,773 - Pf1N1B4_160 0.69 +2.3
202,773 - Pf1N1B4_160 0.69 +0.3
202,773 - Pf1N1B4_160 0.69 -0.3
202,977 + Pf1N1B4_160 0.84 +0.0
202,978 - Pf1N1B4_160 0.84 +0.4
202,978 - Pf1N1B4_160 0.84 -0.7
202,980 + Pf1N1B4_160 0.85 -0.6
202,980 + Pf1N1B4_160 0.85 +0.7
202,980 + Pf1N1B4_160 0.85 -2.1
202,980 + Pf1N1B4_160 0.85 +0.7
202,981 - Pf1N1B4_160 0.85 -2.6
202,981 - Pf1N1B4_160 0.85 +1.5
203,008 + -0.3
203,043 - Pf1N1B4_160 0.89 +1.9
203,269 + +0.2
203,327 + -0.7
203,328 - +1.7
203,328 - -1.8
203,359 + +1.3
203,359 + +0.7
203,360 - -1.4
203,360 - +0.3
203,360 - -0.8
203,369 + -0.4
203,370 - -1.4
203,375 + +0.7
203,375 + -0.3
203,376 - +0.3
203,487 - Pf1N1B4_161 0.85 -2.7
203,540 + +0.7
203,540 + +2.1
203,541 - -0.3
203,541 - +0.7
203,541 - -2.3
203,541 - -0.3
203,541 - -1.3
203,541 - -0.8
203,577 + +0.5
203,578 - +0.0
203,578 - +0.2
203,578 - -0.3
203,578 - -2.1
203,578 - -1.3
203,578 - +0.2
203,578 - -0.6
203,578 - +0.2
203,578 - -1.6
203,578 - +1.9
203,578 - +0.7
203,578 - +0.7
203,578 - +0.6
203,578 - +0.3
203,578 - -0.6
203,578 - -1.3
203,578 - +1.1
203,581 + -0.3
203,582 - -0.8
203,582 - -1.3
203,582 - -0.4
203,582 - -1.8
203,582 - -0.2
203,582 - +0.4
203,593 + +2.2
203,594 - -0.1
203,594 - +1.8
203,607 + +0.0
203,635 + +1.2
203,636 - -0.0
203,636 - +0.1
203,985 + Pf1N1B4_162 0.62 +0.2
203,986 - Pf1N1B4_162 0.62 -0.6
203,986 - Pf1N1B4_162 0.62 +0.4
204,047 + Pf1N1B4_162 0.75 -0.8
204,170 + +0.0
204,170 + -1.7
204,170 + +1.6
204,170 + -0.8
204,170 + -0.1
204,171 - +1.2
204,171 - -0.9
204,171 - -0.3
204,171 - +0.3

Or see this region's nucleotide sequence