Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03578

Experiment: PYE with Paraquat dichloride 0.015 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Paraquat dichloride 0.015 mg/ml
3,734,077	-		CCNA_03577	0.72	+1.0
3,734,117	+		CCNA_03577	0.73	+0.4
3,734,170	+		CCNA_03577	0.75	+1.1
3,734,195	-		CCNA_03577	0.76	+1.4
3,734,285	+		CCNA_03577	0.79	+1.6
3,734,287	-		CCNA_03577	0.79	+2.3
3,734,358	+		CCNA_03577	0.82	-1.4
3,734,408	+		CCNA_03577	0.84	+2.4
3,734,592	+		CCNA_03577	0.90	-0.3
3,734,592	+		CCNA_03577	0.90	+0.3
3,734,592	+		CCNA_03577	0.90	+1.5
3,734,592	+		CCNA_03577	0.90	+1.0
3,734,592	+		CCNA_03577	0.90	+1.8
3,734,592	+		CCNA_03577	0.90	+2.2
3,734,592	+		CCNA_03577	0.90	+1.2
3,734,592	+		CCNA_03577	0.90	+2.0
3,734,592	+		CCNA_03577	0.90	+1.6
3,734,592	+		CCNA_03577	0.90	+0.8
3,734,592	+		CCNA_03577	0.90	+0.1
3,734,592	+		CCNA_03577	0.90	+0.9
3,734,592	+		CCNA_03577	0.90	+3.2
3,734,592	+		CCNA_03577	0.90	+1.8
3,734,592	+		CCNA_03577	0.90	+0.3
3,734,592	+		CCNA_03577	0.90	+1.0
3,734,592	+		CCNA_03577	0.90	-0.7
3,734,592	+		CCNA_03577	0.90	-0.3
3,734,592	+		CCNA_03577	0.90	+0.1
3,734,592	+		CCNA_03577	0.90	+2.8
3,734,600	-				+0.4
3,734,600	-				+2.7
3,734,600	-				+1.1
3,734,600	-				+0.4
3,734,600	-				+2.4
3,734,600	-				+2.7
3,734,600	-				+1.5
3,734,600	-				+2.0
3,734,600	-				+1.7
3,734,600	-				+2.1
3,734,600	-				+1.0
3,734,600	-				+1.4
3,734,600	-				+2.2
3,734,600	-				+1.2
3,734,600	-				+2.2
3,734,600	-				+2.0
3,734,600	-				+1.0
3,734,600	-				+1.5
3,734,600	-				+1.2
3,734,600	-				+1.6
3,734,638	+				-1.6
3,734,648	-				+1.5
3,734,704	-				+2.2
3,734,714	+				+1.0
3,734,714	+				+0.1
3,734,714	+				+0.3
3,734,714	+				+0.7
3,734,714	+				-0.0
3,734,722	-				+1.8
3,734,722	-				+0.6
3,734,786	+				-0.9
3,734,786	-				+1.8
3,734,840	-				-0.6
3,734,840	-				-0.9
3,734,840	-				-0.2
3,734,842	+				+1.5
3,734,842	+				+1.0
3,734,842	+				+0.9
3,734,850	-				+1.7
3,734,850	-				+1.7
3,734,850	-				+2.2
3,734,921	+				+0.9
3,734,921	-				-2.1
3,734,960	+				+0.6
3,734,960	+				-2.7
3,734,997	-				+0.2
3,735,005	+				-0.9
3,735,005	+				-2.0
3,735,033	-				-0.2
3,735,050	+				-1.8
3,735,050	+				+0.9
3,735,050	+				-2.9
3,735,050	+				-0.1
3,735,058	-				-1.5
3,735,071	-				-1.6
3,735,079	+				+1.4
3,735,079	+				-0.6
3,735,087	-				-0.4
3,735,094	+				-0.1
3,735,113	+				+1.4
3,735,177	-				-0.7
3,735,198	-		CCNA_03578	0.10	-1.3
3,735,200	+		CCNA_03578	0.11	+2.6
3,735,205	+		CCNA_03578	0.11	+1.1
3,735,206	+		CCNA_03578	0.11	+0.2
3,735,211	+		CCNA_03578	0.11	-0.7
3,735,237	+		CCNA_03578	0.13	+1.7
3,735,247	+		CCNA_03578	0.13	+1.0
3,735,255	-		CCNA_03578	0.14	-1.9
3,735,255	-		CCNA_03578	0.14	-1.6
3,735,347	-		CCNA_03578	0.19	-1.3
3,735,388	+		CCNA_03578	0.21	-1.4
3,735,390	+		CCNA_03578	0.21	-1.6
3,735,419	+		CCNA_03578	0.22	+0.1
3,735,453	+		CCNA_03578	0.24	-2.5
3,735,453	+		CCNA_03578	0.24	-1.8
3,735,461	-		CCNA_03578	0.25	-1.2
3,735,517	+		CCNA_03578	0.28	-0.6
3,735,517	-		CCNA_03578	0.28	-0.4
3,735,585	-		CCNA_03578	0.31	+0.1
3,735,651	+		CCNA_03578	0.35	+1.4
3,735,656	+		CCNA_03578	0.35	+0.8
3,735,664	-		CCNA_03578	0.36	-1.0
3,735,674	+		CCNA_03578	0.36	+0.2
3,735,722	+		CCNA_03578	0.39	-1.4
3,735,725	-		CCNA_03578	0.39	-0.9
3,735,730	-		CCNA_03578	0.39	-1.0
3,735,772	+		CCNA_03578	0.42	-0.1
3,735,780	-		CCNA_03578	0.42	-2.0
3,735,780	-		CCNA_03578	0.42	-0.1
3,735,799	+		CCNA_03578	0.43	+1.0
3,735,812	+		CCNA_03578	0.44	+0.3
3,735,815	+		CCNA_03578	0.44	+0.2
3,735,817	+		CCNA_03578	0.44	+0.1
3,735,825	-		CCNA_03578	0.44	-1.0
3,735,825	-		CCNA_03578	0.44	-1.4
3,735,874	+		CCNA_03578	0.47	-0.0
3,735,902	+		CCNA_03578	0.49	+0.9
3,735,907	+		CCNA_03578	0.49	+0.6
3,735,920	-		CCNA_03578	0.50	-3.0
3,735,920	-		CCNA_03578	0.50	+0.1
3,735,927	+		CCNA_03578	0.50	+1.0
3,736,022	+		CCNA_03578	0.55	+0.3
3,736,022	+		CCNA_03578	0.55	+0.4
3,736,042	+		CCNA_03578	0.56	+1.4
3,736,042	+		CCNA_03578	0.56	-0.1
3,736,042	+		CCNA_03578	0.56	-0.3
3,736,042	+		CCNA_03578	0.56	+0.8
3,736,050	-		CCNA_03578	0.57	-1.8
3,736,050	-		CCNA_03578	0.57	+2.0
3,736,050	-		CCNA_03578	0.57	+0.9
3,736,087	+		CCNA_03578	0.59	-1.3
3,736,087	+		CCNA_03578	0.59	-0.4
3,736,087	+		CCNA_03578	0.59	-1.4
3,736,095	-		CCNA_03578	0.59	-0.7
3,736,100	-		CCNA_03578	0.59	-1.6
3,736,104	+		CCNA_03578	0.59	-0.6
3,736,120	+		CCNA_03578	0.60	-0.5
3,736,120	+		CCNA_03578	0.60	-0.7
3,736,120	+		CCNA_03578	0.60	-0.0
3,736,120	+		CCNA_03578	0.60	-0.7
3,736,120	+		CCNA_03578	0.60	-0.9
3,736,128	-		CCNA_03578	0.61	+0.3
3,736,128	-		CCNA_03578	0.61	-1.3
3,736,130	+		CCNA_03578	0.61	+0.7
3,736,197	+		CCNA_03578	0.65	-0.3
3,736,336	+		CCNA_03578	0.72	-0.4
3,736,344	-		CCNA_03578	0.72	+0.6
3,736,382	-		CCNA_03578	0.75	-1.2
3,736,503	-		CCNA_03578	0.81	-0.2
3,736,536	-		CCNA_03578	0.83	-2.3
3,736,543	+		CCNA_03578	0.83	-0.1
3,736,543	+		CCNA_03578	0.83	-2.6
3,736,543	+		CCNA_03578	0.83	-1.4
3,736,645	-		CCNA_03578	0.89	+1.7
3,736,676	+				+1.2
3,736,684	-				-1.8
3,736,689	-				-1.5
3,736,714	+				-0.9
3,736,727	+				-2.5
3,736,730	-				+1.0
3,736,755	+				-0.7
3,736,774	+				-0.2
3,736,774	+				-1.5
3,736,782	-				-1.9
3,736,793	+				-2.0
3,736,798	+				-0.9
3,736,806	-				-0.4
3,736,828	+				+0.1
3,736,846	+				+0.5
3,736,884	-				-0.9
3,736,894	+				-0.7
3,736,902	-				-0.8
3,736,902	-				+0.2
3,736,903	-				+1.6
3,736,912	+				-2.2
3,736,921	-				-3.4
3,737,029	+		CCNA_03579	0.43	+0.5
3,737,032	+		CCNA_03579	0.44	-1.4
3,737,039	+		CCNA_03579	0.46	-0.3
3,737,040	-		CCNA_03579	0.46	-2.3
3,737,056	+		CCNA_03579	0.51	+0.9
3,737,056	+		CCNA_03579	0.51	-1.0
3,737,056	+		CCNA_03579	0.51	-0.7
3,737,064	-		CCNA_03579	0.54	-0.0
3,737,077	+		CCNA_03579	0.58	-0.3
3,737,077	+		CCNA_03579	0.58	-1.3
3,737,084	-		CCNA_03579	0.61	-0.6
3,737,085	-		CCNA_03579	0.61	+0.9
3,737,085	-		CCNA_03579	0.61	-2.4
3,737,085	-		CCNA_03579	0.61	-2.4
3,737,094	+		CCNA_03579	0.64	-2.0
3,737,094	+		CCNA_03579	0.64	-0.5
3,737,212	+				+0.4
3,737,234	+				-1.4
3,737,242	-				+0.4
3,737,303	-				-1.9
3,737,305	+				-0.8
3,737,305	+				-1.4
3,737,311	+				-0.5
3,737,315	-				+0.6
3,737,333	-				-1.7
3,737,351	+				-0.4
3,737,390	+				-0.7
3,737,390	+				-2.3
3,737,390	+				-1.1
3,737,390	+				-0.7
3,737,390	+				-1.3
3,737,398	-				+0.1
3,737,398	-				+1.0
3,737,398	-				-0.8
3,737,398	-				+0.3
3,737,398	-				+0.2
3,737,398	-				+0.2
3,737,398	-				-0.5
3,737,398	-				-0.4
3,737,434	-				-1.9
3,737,441	+				+1.3
3,737,508	+		CCNA_03580	0.14	-1.2
3,737,508	+		CCNA_03580	0.14	+1.5
3,737,515	+		CCNA_03580	0.16	-2.3
3,737,516	-		CCNA_03580	0.16	-1.6
3,737,516	-		CCNA_03580	0.16	-1.6
3,737,516	-		CCNA_03580	0.16	+1.3
3,737,516	-		CCNA_03580	0.16	-0.6
3,737,516	-		CCNA_03580	0.16	-0.6
3,737,516	-		CCNA_03580	0.16	+1.0
3,737,516	-		CCNA_03580	0.16	+0.4
3,737,516	-		CCNA_03580	0.16	+0.4
3,737,523	-		CCNA_03580	0.18	-0.9
3,737,621	+		CCNA_03580	0.39	-0.5
3,737,631	+		CCNA_03580	0.41	+0.5
3,737,656	+		CCNA_03580	0.47	+0.8
3,737,664	-		CCNA_03580	0.48	-3.4
3,737,664	-		CCNA_03580	0.48	-1.1
3,737,677	+		CCNA_03580	0.51	+0.4
3,737,756	-		CCNA_03580	0.68	+0.8
3,737,770	-		CCNA_03580	0.71	-0.9
3,737,800	-		CCNA_03580	0.78	+0.7
3,737,806	+		CCNA_03580	0.79	-2.0
3,737,806	+		CCNA_03580	0.79	-0.9