Experiment: PYE with Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02906 and CCNA_02907 are separated by 299 nucleotides CCNA_02907 and CCNA_02908 are separated by 20 nucleotides CCNA_02908 and CCNA_02909 are separated by 115 nucleotides
CCNA_02906: CCNA_02906 - acyltransferase family protein, at 3,061,621 to 3,062,715
_02906
CCNA_02907: CCNA_02907 - transposase, at 3,063,015 to 3,063,950
_02907
CCNA_02908: CCNA_02908 - HAD superfamily hydrolase, at 3,063,971 to 3,064,684
_02908
CCNA_02909: CCNA_02909 - tetratricopeptide repeat-containing 2OG-Fe(II) oxygenase, at 3,064,800 to 3,066,293
_02909
Position (kb)
3063
3064 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3062.031 kb on + strand, within CCNA_02906 at 3062.031 kb on + strand, within CCNA_02906 at 3062.031 kb on + strand, within CCNA_02906 at 3062.031 kb on + strand, within CCNA_02906 at 3062.039 kb on - strand, within CCNA_02906 at 3062.050 kb on + strand, within CCNA_02906 at 3062.159 kb on + strand, within CCNA_02906 at 3062.159 kb on + strand, within CCNA_02906 at 3062.164 kb on + strand, within CCNA_02906 at 3062.169 kb on + strand, within CCNA_02906 at 3062.169 kb on + strand, within CCNA_02906 at 3062.172 kb on - strand, within CCNA_02906 at 3062.180 kb on + strand, within CCNA_02906 at 3062.188 kb on - strand, within CCNA_02906 at 3062.188 kb on - strand, within CCNA_02906 at 3062.204 kb on + strand, within CCNA_02906 at 3062.232 kb on + strand, within CCNA_02906 at 3062.236 kb on - strand, within CCNA_02906 at 3062.254 kb on + strand, within CCNA_02906 at 3062.282 kb on + strand, within CCNA_02906 at 3062.282 kb on + strand, within CCNA_02906 at 3062.290 kb on - strand, within CCNA_02906 at 3062.290 kb on - strand, within CCNA_02906 at 3062.334 kb on - strand, within CCNA_02906 at 3062.334 kb on - strand, within CCNA_02906 at 3062.356 kb on - strand, within CCNA_02906 at 3062.370 kb on + strand, within CCNA_02906 at 3062.370 kb on + strand, within CCNA_02906 at 3062.378 kb on - strand, within CCNA_02906 at 3062.389 kb on + strand, within CCNA_02906 at 3062.418 kb on + strand, within CCNA_02906 at 3062.429 kb on - strand, within CCNA_02906 at 3062.439 kb on + strand, within CCNA_02906 at 3062.439 kb on + strand, within CCNA_02906 at 3062.501 kb on + strand, within CCNA_02906 at 3062.536 kb on + strand, within CCNA_02906 at 3062.536 kb on + strand, within CCNA_02906 at 3062.549 kb on - strand, within CCNA_02906 at 3062.551 kb on + strand, within CCNA_02906 at 3062.552 kb on + strand, within CCNA_02906 at 3062.554 kb on - strand, within CCNA_02906 at 3062.560 kb on - strand, within CCNA_02906 at 3062.601 kb on + strand, within CCNA_02906 at 3062.601 kb on + strand, within CCNA_02906 at 3062.601 kb on + strand, within CCNA_02906 at 3062.601 kb on + strand, within CCNA_02906 at 3062.609 kb on - strand at 3062.609 kb on - strand at 3062.609 kb on - strand at 3062.609 kb on - strand at 3062.609 kb on - strand at 3062.609 kb on - strand at 3062.667 kb on + strand at 3062.667 kb on + strand at 3062.684 kb on - strand at 3062.709 kb on + strand at 3062.709 kb on + strand at 3062.717 kb on - strand at 3062.717 kb on - strand at 3062.717 kb on - strand at 3062.717 kb on - strand at 3062.721 kb on + strand at 3062.721 kb on + strand at 3062.721 kb on + strand at 3062.729 kb on - strand at 3062.752 kb on - strand at 3062.752 kb on - strand at 3062.789 kb on - strand at 3063.970 kb on + strand at 3063.978 kb on - strand at 3063.978 kb on - strand at 3063.996 kb on + strand at 3064.015 kb on - strand at 3064.015 kb on - strand at 3064.018 kb on + strand at 3064.025 kb on - strand at 3064.033 kb on + strand at 3064.033 kb on + strand at 3064.033 kb on + strand at 3064.046 kb on - strand, within CCNA_02908 at 3064.052 kb on + strand, within CCNA_02908 at 3064.052 kb on + strand, within CCNA_02908 at 3064.052 kb on + strand, within CCNA_02908 at 3064.052 kb on + strand, within CCNA_02908 at 3064.052 kb on + strand, within CCNA_02908 at 3064.052 kb on + strand, within CCNA_02908 at 3064.052 kb on + strand, within CCNA_02908 at 3064.052 kb on + strand, within CCNA_02908 at 3064.052 kb on + strand, within CCNA_02908 at 3064.052 kb on + strand, within CCNA_02908 at 3064.052 kb on + strand, within CCNA_02908 at 3064.052 kb on + strand, within CCNA_02908 at 3064.052 kb on + strand, within CCNA_02908 at 3064.052 kb on + strand at 3064.052 kb on + strand, within CCNA_02908 at 3064.052 kb on + strand, within CCNA_02908 at 3064.052 kb on + strand, within CCNA_02908 at 3064.052 kb on + strand, within CCNA_02908 at 3064.060 kb on - strand, within CCNA_02908 at 3064.060 kb on - strand, within CCNA_02908 at 3064.060 kb on - strand, within CCNA_02908 at 3064.060 kb on - strand, within CCNA_02908 at 3064.060 kb on - strand, within CCNA_02908 at 3064.060 kb on - strand, within CCNA_02908 at 3064.060 kb on - strand, within CCNA_02908 at 3064.060 kb on - strand, within CCNA_02908 at 3064.060 kb on - strand, within CCNA_02908 at 3064.060 kb on - strand, within CCNA_02908 at 3064.060 kb on - strand, within CCNA_02908 at 3064.060 kb on - strand, within CCNA_02908 at 3064.060 kb on - strand, within CCNA_02908 at 3064.060 kb on - strand, within CCNA_02908 at 3064.060 kb on - strand, within CCNA_02908 at 3064.060 kb on - strand, within CCNA_02908 at 3064.060 kb on - strand, within CCNA_02908 at 3064.093 kb on - strand, within CCNA_02908 at 3064.141 kb on + strand, within CCNA_02908 at 3064.141 kb on + strand, within CCNA_02908 at 3064.149 kb on - strand, within CCNA_02908 at 3064.180 kb on - strand, within CCNA_02908 at 3064.273 kb on - strand, within CCNA_02908 at 3064.383 kb on - strand, within CCNA_02908 at 3064.383 kb on - strand, within CCNA_02908 at 3064.394 kb on + strand, within CCNA_02908 at 3064.415 kb on + strand, within CCNA_02908 at 3064.415 kb on + strand, within CCNA_02908 at 3064.447 kb on - strand, within CCNA_02908 at 3064.458 kb on - strand, within CCNA_02908 at 3064.458 kb on - strand, within CCNA_02908 at 3064.463 kb on + strand, within CCNA_02908 at 3064.463 kb on + strand, within CCNA_02908 at 3064.463 kb on + strand, within CCNA_02908 at 3064.470 kb on - strand, within CCNA_02908 at 3064.471 kb on - strand, within CCNA_02908 at 3064.479 kb on + strand, within CCNA_02908 at 3064.479 kb on + strand, within CCNA_02908 at 3064.487 kb on - strand, within CCNA_02908 at 3064.489 kb on + strand, within CCNA_02908 at 3064.490 kb on + strand, within CCNA_02908 at 3064.497 kb on - strand, within CCNA_02908 at 3064.497 kb on - strand, within CCNA_02908 at 3064.498 kb on + strand, within CCNA_02908 at 3064.506 kb on - strand, within CCNA_02908 at 3064.511 kb on + strand, within CCNA_02908 at 3064.569 kb on + strand, within CCNA_02908 at 3064.599 kb on - strand, within CCNA_02908 at 3064.599 kb on - strand, within CCNA_02908 at 3064.615 kb on + strand at 3064.704 kb on + strand at 3064.704 kb on + strand at 3064.709 kb on + strand at 3064.750 kb on - strand at 3064.772 kb on - strand at 3064.777 kb on - strand at 3064.818 kb on + strand at 3064.818 kb on + strand at 3064.823 kb on + strand at 3064.831 kb on - strand at 3064.831 kb on - strand at 3064.833 kb on + strand at 3064.861 kb on + strand at 3064.861 kb on + strand at 3064.892 kb on + strand at 3064.927 kb on - strand at 3064.932 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.015 mg/ml remove 3,062,031 + CCNA_02906 0.37 -0.4 3,062,031 + CCNA_02906 0.37 +2.4 3,062,031 + CCNA_02906 0.37 -0.6 3,062,031 + CCNA_02906 0.37 +2.0 3,062,039 - CCNA_02906 0.38 +0.8 3,062,050 + CCNA_02906 0.39 +1.6 3,062,159 + CCNA_02906 0.49 +0.3 3,062,159 + CCNA_02906 0.49 +1.3 3,062,164 + CCNA_02906 0.50 +0.2 3,062,169 + CCNA_02906 0.50 +0.9 3,062,169 + CCNA_02906 0.50 -0.9 3,062,172 - CCNA_02906 0.50 +0.1 3,062,180 + CCNA_02906 0.51 +0.3 3,062,188 - CCNA_02906 0.52 +0.2 3,062,188 - CCNA_02906 0.52 -1.8 3,062,204 + CCNA_02906 0.53 +0.3 3,062,232 + CCNA_02906 0.56 +1.6 3,062,236 - CCNA_02906 0.56 +0.2 3,062,254 + CCNA_02906 0.58 +1.5 3,062,282 + CCNA_02906 0.60 +1.8 3,062,282 + CCNA_02906 0.60 +0.3 3,062,290 - CCNA_02906 0.61 -1.1 3,062,290 - CCNA_02906 0.61 -1.8 3,062,334 - CCNA_02906 0.65 +0.2 3,062,334 - CCNA_02906 0.65 -0.0 3,062,356 - CCNA_02906 0.67 +0.2 3,062,370 + CCNA_02906 0.68 +0.9 3,062,370 + CCNA_02906 0.68 +0.3 3,062,378 - CCNA_02906 0.69 +0.1 3,062,389 + CCNA_02906 0.70 +0.8 3,062,418 + CCNA_02906 0.73 +0.2 3,062,429 - CCNA_02906 0.74 -0.0 3,062,439 + CCNA_02906 0.75 +0.9 3,062,439 + CCNA_02906 0.75 +1.0 3,062,501 + CCNA_02906 0.80 -0.2 3,062,536 + CCNA_02906 0.84 -0.5 3,062,536 + CCNA_02906 0.84 -1.6 3,062,549 - CCNA_02906 0.85 -0.7 3,062,551 + CCNA_02906 0.85 -0.8 3,062,552 + CCNA_02906 0.85 -0.9 3,062,554 - CCNA_02906 0.85 -0.5 3,062,560 - CCNA_02906 0.86 -0.5 3,062,601 + CCNA_02906 0.89 -0.8 3,062,601 + CCNA_02906 0.89 -2.7 3,062,601 + CCNA_02906 0.89 -1.6 3,062,601 + CCNA_02906 0.89 -2.8 3,062,609 - +1.0 3,062,609 - +0.0 3,062,609 - -0.8 3,062,609 - -1.7 3,062,609 - -0.8 3,062,609 - -1.5 3,062,667 + +1.1 3,062,667 + +1.4 3,062,684 - +1.2 3,062,709 + +0.9 3,062,709 + +0.6 3,062,717 - +0.3 3,062,717 - -0.3 3,062,717 - -2.2 3,062,717 - +0.6 3,062,721 + +0.9 3,062,721 + +0.9 3,062,721 + +1.0 3,062,729 - -1.3 3,062,752 - +0.2 3,062,752 - +1.5 3,062,789 - +0.2 3,063,970 + -0.3 3,063,978 - -0.4 3,063,978 - -1.6 3,063,996 + +0.6 3,064,015 - -1.0 3,064,015 - +2.4 3,064,018 + -0.7 3,064,025 - +0.2 3,064,033 + +0.5 3,064,033 + -1.3 3,064,033 + +2.4 3,064,046 - CCNA_02908 0.11 +0.8 3,064,052 + CCNA_02908 0.11 -1.2 3,064,052 + CCNA_02908 0.11 -0.1 3,064,052 + CCNA_02908 0.11 +0.4 3,064,052 + CCNA_02908 0.11 -0.1 3,064,052 + CCNA_02908 0.11 +0.5 3,064,052 + CCNA_02908 0.11 -2.0 3,064,052 + CCNA_02908 0.11 -0.2 3,064,052 + CCNA_02908 0.11 -2.0 3,064,052 + CCNA_02908 0.11 +2.1 3,064,052 + CCNA_02908 0.11 +0.5 3,064,052 + CCNA_02908 0.11 +0.3 3,064,052 + CCNA_02908 0.11 +2.4 3,064,052 + CCNA_02908 0.11 +0.8 3,064,052 + +0.9 3,064,052 + CCNA_02908 0.11 +1.3 3,064,052 + CCNA_02908 0.11 +0.2 3,064,052 + CCNA_02908 0.11 +1.4 3,064,052 + CCNA_02908 0.11 +1.9 3,064,060 - CCNA_02908 0.12 +2.2 3,064,060 - CCNA_02908 0.12 +0.1 3,064,060 - CCNA_02908 0.12 -1.8 3,064,060 - CCNA_02908 0.12 -0.2 3,064,060 - CCNA_02908 0.12 +2.4 3,064,060 - CCNA_02908 0.12 +0.7 3,064,060 - CCNA_02908 0.12 +0.5 3,064,060 - CCNA_02908 0.12 +1.6 3,064,060 - CCNA_02908 0.12 +1.2 3,064,060 - CCNA_02908 0.12 -1.3 3,064,060 - CCNA_02908 0.12 -2.8 3,064,060 - CCNA_02908 0.12 +0.0 3,064,060 - CCNA_02908 0.12 +2.2 3,064,060 - CCNA_02908 0.12 -0.2 3,064,060 - CCNA_02908 0.12 +1.2 3,064,060 - CCNA_02908 0.12 +0.4 3,064,060 - CCNA_02908 0.12 -0.2 3,064,093 - CCNA_02908 0.17 +1.6 3,064,141 + CCNA_02908 0.24 +1.0 3,064,141 + CCNA_02908 0.24 +1.0 3,064,149 - CCNA_02908 0.25 +2.4 3,064,180 - CCNA_02908 0.29 +0.4 3,064,273 - CCNA_02908 0.42 -0.7 3,064,383 - CCNA_02908 0.58 -1.2 3,064,383 - CCNA_02908 0.58 +1.3 3,064,394 + CCNA_02908 0.59 -0.9 3,064,415 + CCNA_02908 0.62 -0.8 3,064,415 + CCNA_02908 0.62 -0.1 3,064,447 - CCNA_02908 0.67 +1.0 3,064,458 - CCNA_02908 0.68 +0.8 3,064,458 - CCNA_02908 0.68 +1.9 3,064,463 + CCNA_02908 0.69 -1.0 3,064,463 + CCNA_02908 0.69 +0.0 3,064,463 + CCNA_02908 0.69 -1.2 3,064,470 - CCNA_02908 0.70 -0.6 3,064,471 - CCNA_02908 0.70 +0.8 3,064,479 + CCNA_02908 0.71 +1.1 3,064,479 + CCNA_02908 0.71 -0.3 3,064,487 - CCNA_02908 0.72 +0.1 3,064,489 + CCNA_02908 0.73 +1.6 3,064,490 + CCNA_02908 0.73 +0.1 3,064,497 - CCNA_02908 0.74 +0.1 3,064,497 - CCNA_02908 0.74 +3.1 3,064,498 + CCNA_02908 0.74 -1.3 3,064,506 - CCNA_02908 0.75 +0.9 3,064,511 + CCNA_02908 0.76 +0.0 3,064,569 + CCNA_02908 0.84 -0.7 3,064,599 - CCNA_02908 0.88 +1.6 3,064,599 - CCNA_02908 0.88 -1.4 3,064,615 + -0.5 3,064,704 + +1.1 3,064,704 + +2.0 3,064,709 + +0.3 3,064,750 - -0.1 3,064,772 - +1.5 3,064,777 - -1.3 3,064,818 + +0.1 3,064,818 + +1.3 3,064,823 + -0.1 3,064,831 - -0.8 3,064,831 - +1.1 3,064,833 + +1.5 3,064,861 + +1.0 3,064,861 + -0.0 3,064,892 + -1.5 3,064,927 - +0.4 3,064,932 - +0.8
Or see this region's nucleotide sequence