Experiment: PYE with Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02120 and CCNA_02121 are separated by 142 nucleotides CCNA_02121 and CCNA_02122 overlap by 4 nucleotides
CCNA_02120: CCNA_02120 - tetratricopeptide repeat family protein, at 2,270,198 to 2,271,166
_02120
CCNA_02121: CCNA_02121 - ATP-dependent helicase, at 2,271,309 to 2,273,888
_02121
CCNA_02122: CCNA_02122 - DNA repair nuclease, ligase-associated (TIGR04123) (from data) , at 2,273,885 to 2,274,592
_02122
Position (kb)
2271
2272
2273
2274 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2270.329 kb on - strand, within CCNA_02120 at 2270.340 kb on - strand, within CCNA_02120 at 2270.349 kb on + strand, within CCNA_02120 at 2270.351 kb on + strand, within CCNA_02120 at 2270.368 kb on + strand, within CCNA_02120 at 2270.459 kb on + strand, within CCNA_02120 at 2270.459 kb on + strand, within CCNA_02120 at 2270.543 kb on - strand, within CCNA_02120 at 2270.545 kb on - strand, within CCNA_02120 at 2270.554 kb on + strand, within CCNA_02120 at 2270.609 kb on + strand, within CCNA_02120 at 2270.609 kb on + strand, within CCNA_02120 at 2270.617 kb on - strand, within CCNA_02120 at 2270.663 kb on + strand, within CCNA_02120 at 2270.686 kb on + strand, within CCNA_02120 at 2270.686 kb on + strand, within CCNA_02120 at 2270.717 kb on + strand, within CCNA_02120 at 2270.747 kb on + strand, within CCNA_02120 at 2270.747 kb on + strand, within CCNA_02120 at 2270.778 kb on - strand, within CCNA_02120 at 2270.783 kb on - strand, within CCNA_02120 at 2270.807 kb on - strand, within CCNA_02120 at 2270.822 kb on + strand, within CCNA_02120 at 2270.830 kb on - strand, within CCNA_02120 at 2270.846 kb on + strand, within CCNA_02120 at 2270.848 kb on + strand, within CCNA_02120 at 2270.865 kb on - strand, within CCNA_02120 at 2270.963 kb on - strand, within CCNA_02120 at 2271.032 kb on - strand, within CCNA_02120 at 2271.032 kb on - strand, within CCNA_02120 at 2271.100 kb on - strand at 2271.117 kb on + strand at 2271.117 kb on + strand at 2271.125 kb on - strand at 2271.125 kb on - strand at 2271.134 kb on + strand at 2271.169 kb on - strand at 2271.176 kb on - strand at 2271.182 kb on - strand at 2271.184 kb on - strand at 2271.185 kb on + strand at 2271.213 kb on - strand at 2271.219 kb on + strand at 2271.226 kb on + strand at 2271.248 kb on - strand at 2271.341 kb on - strand at 2271.344 kb on + strand at 2271.346 kb on - strand at 2271.393 kb on + strand at 2271.401 kb on - strand at 2271.412 kb on - strand at 2271.423 kb on + strand at 2271.431 kb on - strand at 2271.450 kb on + strand at 2271.450 kb on + strand at 2271.497 kb on + strand at 2271.504 kb on - strand at 2271.509 kb on + strand at 2271.526 kb on + strand at 2271.534 kb on - strand at 2271.534 kb on - strand at 2271.685 kb on + strand, within CCNA_02121 at 2271.685 kb on + strand, within CCNA_02121 at 2271.690 kb on + strand, within CCNA_02121 at 2271.703 kb on - strand, within CCNA_02121 at 2271.719 kb on + strand, within CCNA_02121 at 2271.719 kb on + strand, within CCNA_02121 at 2271.724 kb on + strand, within CCNA_02121 at 2271.727 kb on - strand, within CCNA_02121 at 2271.756 kb on + strand, within CCNA_02121 at 2271.761 kb on + strand, within CCNA_02121 at 2271.894 kb on - strand, within CCNA_02121 at 2271.921 kb on + strand, within CCNA_02121 at 2271.961 kb on - strand, within CCNA_02121 at 2271.989 kb on - strand, within CCNA_02121 at 2272.004 kb on - strand, within CCNA_02121 at 2272.009 kb on - strand, within CCNA_02121 at 2272.032 kb on - strand, within CCNA_02121 at 2272.049 kb on + strand, within CCNA_02121 at 2272.049 kb on + strand, within CCNA_02121 at 2272.062 kb on - strand, within CCNA_02121 at 2272.104 kb on - strand, within CCNA_02121 at 2272.124 kb on - strand, within CCNA_02121 at 2272.134 kb on + strand, within CCNA_02121 at 2272.142 kb on - strand, within CCNA_02121 at 2272.142 kb on - strand, within CCNA_02121 at 2272.147 kb on - strand, within CCNA_02121 at 2272.266 kb on - strand, within CCNA_02121 at 2272.281 kb on + strand, within CCNA_02121 at 2272.281 kb on + strand, within CCNA_02121 at 2272.286 kb on + strand, within CCNA_02121 at 2272.293 kb on + strand, within CCNA_02121 at 2272.293 kb on + strand, within CCNA_02121 at 2272.328 kb on + strand, within CCNA_02121 at 2272.336 kb on - strand, within CCNA_02121 at 2272.373 kb on + strand, within CCNA_02121 at 2272.378 kb on + strand, within CCNA_02121 at 2272.381 kb on - strand, within CCNA_02121 at 2272.406 kb on - strand, within CCNA_02121 at 2272.406 kb on - strand, within CCNA_02121 at 2272.406 kb on - strand, within CCNA_02121 at 2272.472 kb on - strand, within CCNA_02121 at 2272.502 kb on + strand, within CCNA_02121 at 2272.553 kb on - strand, within CCNA_02121 at 2272.624 kb on + strand, within CCNA_02121 at 2272.637 kb on + strand, within CCNA_02121 at 2272.638 kb on + strand, within CCNA_02121 at 2272.649 kb on + strand, within CCNA_02121 at 2272.654 kb on + strand, within CCNA_02121 at 2272.706 kb on + strand, within CCNA_02121 at 2272.706 kb on + strand, within CCNA_02121 at 2272.706 kb on + strand, within CCNA_02121 at 2272.706 kb on + strand, within CCNA_02121 at 2272.706 kb on + strand, within CCNA_02121 at 2272.714 kb on - strand, within CCNA_02121 at 2272.714 kb on - strand, within CCNA_02121 at 2272.731 kb on + strand, within CCNA_02121 at 2272.754 kb on + strand, within CCNA_02121 at 2272.783 kb on + strand, within CCNA_02121 at 2272.823 kb on + strand, within CCNA_02121 at 2272.823 kb on + strand, within CCNA_02121 at 2272.823 kb on + strand, within CCNA_02121 at 2272.823 kb on + strand, within CCNA_02121 at 2272.823 kb on + strand, within CCNA_02121 at 2272.823 kb on + strand, within CCNA_02121 at 2272.831 kb on - strand, within CCNA_02121 at 2272.831 kb on - strand, within CCNA_02121 at 2272.906 kb on - strand, within CCNA_02121 at 2273.015 kb on + strand at 2273.018 kb on - strand, within CCNA_02121 at 2273.023 kb on - strand, within CCNA_02121 at 2273.101 kb on + strand, within CCNA_02121 at 2273.117 kb on + strand, within CCNA_02121 at 2273.160 kb on - strand, within CCNA_02121 at 2273.178 kb on - strand, within CCNA_02121 at 2273.190 kb on + strand, within CCNA_02121 at 2273.190 kb on + strand, within CCNA_02121 at 2273.190 kb on + strand, within CCNA_02121 at 2273.190 kb on + strand, within CCNA_02121 at 2273.252 kb on + strand, within CCNA_02121 at 2273.260 kb on - strand, within CCNA_02121 at 2273.260 kb on - strand, within CCNA_02121 at 2273.277 kb on + strand at 2273.311 kb on + strand, within CCNA_02121 at 2273.320 kb on + strand, within CCNA_02121 at 2273.333 kb on - strand, within CCNA_02121 at 2273.337 kb on + strand, within CCNA_02121 at 2273.345 kb on - strand, within CCNA_02121 at 2273.373 kb on - strand, within CCNA_02121 at 2273.425 kb on + strand, within CCNA_02121 at 2273.434 kb on + strand, within CCNA_02121 at 2273.479 kb on + strand, within CCNA_02121 at 2273.488 kb on - strand, within CCNA_02121 at 2273.496 kb on + strand, within CCNA_02121 at 2273.561 kb on + strand, within CCNA_02121 at 2273.615 kb on + strand, within CCNA_02121 at 2273.618 kb on - strand, within CCNA_02121 at 2273.623 kb on - strand, within CCNA_02121 at 2273.623 kb on - strand, within CCNA_02121 at 2273.637 kb on + strand at 2273.759 kb on + strand at 2273.759 kb on + strand at 2273.762 kb on - strand at 2273.765 kb on + strand at 2273.780 kb on - strand at 2273.974 kb on + strand, within CCNA_02122 at 2273.974 kb on + strand, within CCNA_02122 at 2273.995 kb on + strand, within CCNA_02122 at 2274.061 kb on - strand, within CCNA_02122 at 2274.089 kb on - strand, within CCNA_02122 at 2274.183 kb on + strand, within CCNA_02122 at 2274.207 kb on + strand, within CCNA_02122 at 2274.219 kb on + strand, within CCNA_02122 at 2274.229 kb on + strand, within CCNA_02122 at 2274.237 kb on - strand, within CCNA_02122 at 2274.237 kb on - strand, within CCNA_02122 at 2274.269 kb on - strand, within CCNA_02122 at 2274.270 kb on - strand, within CCNA_02122 at 2274.280 kb on - strand, within CCNA_02122 at 2274.367 kb on + strand, within CCNA_02122 at 2274.367 kb on + strand, within CCNA_02122 at 2274.375 kb on - strand, within CCNA_02122 at 2274.380 kb on + strand, within CCNA_02122 at 2274.453 kb on - strand, within CCNA_02122 at 2274.532 kb on - strand at 2274.556 kb on - strand at 2274.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.015 mg/ml remove 2,270,329 - CCNA_02120 0.14 -0.2 2,270,340 - CCNA_02120 0.15 -0.4 2,270,349 + CCNA_02120 0.16 -0.4 2,270,351 + CCNA_02120 0.16 -0.5 2,270,368 + CCNA_02120 0.18 -2.2 2,270,459 + CCNA_02120 0.27 -1.3 2,270,459 + CCNA_02120 0.27 -0.9 2,270,543 - CCNA_02120 0.36 -0.6 2,270,545 - CCNA_02120 0.36 +0.9 2,270,554 + CCNA_02120 0.37 -2.9 2,270,609 + CCNA_02120 0.42 -1.7 2,270,609 + CCNA_02120 0.42 -0.1 2,270,617 - CCNA_02120 0.43 +0.8 2,270,663 + CCNA_02120 0.48 -0.8 2,270,686 + CCNA_02120 0.50 -0.1 2,270,686 + CCNA_02120 0.50 +1.8 2,270,717 + CCNA_02120 0.54 -1.8 2,270,747 + CCNA_02120 0.57 -0.2 2,270,747 + CCNA_02120 0.57 -0.9 2,270,778 - CCNA_02120 0.60 -2.1 2,270,783 - CCNA_02120 0.60 -1.9 2,270,807 - CCNA_02120 0.63 -0.9 2,270,822 + CCNA_02120 0.64 -1.3 2,270,830 - CCNA_02120 0.65 -2.6 2,270,846 + CCNA_02120 0.67 -1.5 2,270,848 + CCNA_02120 0.67 -0.8 2,270,865 - CCNA_02120 0.69 +2.5 2,270,963 - CCNA_02120 0.79 -2.9 2,271,032 - CCNA_02120 0.86 -0.7 2,271,032 - CCNA_02120 0.86 -0.8 2,271,100 - -1.5 2,271,117 + -0.1 2,271,117 + -0.4 2,271,125 - -2.7 2,271,125 - -0.3 2,271,134 + +1.0 2,271,169 - +0.2 2,271,176 - +0.3 2,271,182 - +0.5 2,271,184 - -1.1 2,271,185 + +1.1 2,271,213 - +1.0 2,271,219 + +0.0 2,271,226 + +0.2 2,271,248 - +0.0 2,271,341 - -0.6 2,271,344 + -0.6 2,271,346 - +0.2 2,271,393 + -1.9 2,271,401 - -1.2 2,271,412 - -0.6 2,271,423 + +1.0 2,271,431 - -0.9 2,271,450 + +0.3 2,271,450 + +0.5 2,271,497 + +0.0 2,271,504 - +1.1 2,271,509 + -2.6 2,271,526 + -0.7 2,271,534 - -1.8 2,271,534 - -0.2 2,271,685 + CCNA_02121 0.15 -1.4 2,271,685 + CCNA_02121 0.15 -1.7 2,271,690 + CCNA_02121 0.15 -1.4 2,271,703 - CCNA_02121 0.15 +1.2 2,271,719 + CCNA_02121 0.16 -1.1 2,271,719 + CCNA_02121 0.16 +1.1 2,271,724 + CCNA_02121 0.16 +0.4 2,271,727 - CCNA_02121 0.16 -2.9 2,271,756 + CCNA_02121 0.17 -0.8 2,271,761 + CCNA_02121 0.18 -2.3 2,271,894 - CCNA_02121 0.23 -0.6 2,271,921 + CCNA_02121 0.24 +1.3 2,271,961 - CCNA_02121 0.25 +1.3 2,271,989 - CCNA_02121 0.26 -0.4 2,272,004 - CCNA_02121 0.27 -1.1 2,272,009 - CCNA_02121 0.27 -0.2 2,272,032 - CCNA_02121 0.28 -0.5 2,272,049 + CCNA_02121 0.29 +0.3 2,272,049 + CCNA_02121 0.29 +0.1 2,272,062 - CCNA_02121 0.29 -1.4 2,272,104 - CCNA_02121 0.31 -0.3 2,272,124 - CCNA_02121 0.32 -1.3 2,272,134 + CCNA_02121 0.32 -0.7 2,272,142 - CCNA_02121 0.32 -1.9 2,272,142 - CCNA_02121 0.32 -0.3 2,272,147 - CCNA_02121 0.32 +0.2 2,272,266 - CCNA_02121 0.37 -0.5 2,272,281 + CCNA_02121 0.38 -1.3 2,272,281 + CCNA_02121 0.38 +0.5 2,272,286 + CCNA_02121 0.38 -2.7 2,272,293 + CCNA_02121 0.38 +0.0 2,272,293 + CCNA_02121 0.38 -1.0 2,272,328 + CCNA_02121 0.39 -2.9 2,272,336 - CCNA_02121 0.40 -0.1 2,272,373 + CCNA_02121 0.41 +0.1 2,272,378 + CCNA_02121 0.41 +0.3 2,272,381 - CCNA_02121 0.42 -1.2 2,272,406 - CCNA_02121 0.43 -1.3 2,272,406 - CCNA_02121 0.43 -2.2 2,272,406 - CCNA_02121 0.43 -1.0 2,272,472 - CCNA_02121 0.45 +1.3 2,272,502 + CCNA_02121 0.46 -0.1 2,272,553 - CCNA_02121 0.48 -3.2 2,272,624 + CCNA_02121 0.51 -0.1 2,272,637 + CCNA_02121 0.51 -2.8 2,272,638 + CCNA_02121 0.52 +0.6 2,272,649 + CCNA_02121 0.52 -1.3 2,272,654 + CCNA_02121 0.52 -0.1 2,272,706 + CCNA_02121 0.54 +0.5 2,272,706 + CCNA_02121 0.54 -0.4 2,272,706 + CCNA_02121 0.54 -2.5 2,272,706 + CCNA_02121 0.54 +0.7 2,272,706 + CCNA_02121 0.54 +1.8 2,272,714 - CCNA_02121 0.54 -0.1 2,272,714 - CCNA_02121 0.54 +1.3 2,272,731 + CCNA_02121 0.55 -2.6 2,272,754 + CCNA_02121 0.56 -1.1 2,272,783 + CCNA_02121 0.57 -0.5 2,272,823 + CCNA_02121 0.59 +1.0 2,272,823 + CCNA_02121 0.59 -2.8 2,272,823 + CCNA_02121 0.59 -0.7 2,272,823 + CCNA_02121 0.59 -0.7 2,272,823 + CCNA_02121 0.59 -2.4 2,272,823 + CCNA_02121 0.59 +0.5 2,272,831 - CCNA_02121 0.59 +0.4 2,272,831 - CCNA_02121 0.59 -0.7 2,272,906 - CCNA_02121 0.62 -2.5 2,273,015 + +0.2 2,273,018 - CCNA_02121 0.66 -0.1 2,273,023 - CCNA_02121 0.66 +1.3 2,273,101 + CCNA_02121 0.69 -2.0 2,273,117 + CCNA_02121 0.70 -0.4 2,273,160 - CCNA_02121 0.72 -1.6 2,273,178 - CCNA_02121 0.72 -0.2 2,273,190 + CCNA_02121 0.73 -1.6 2,273,190 + CCNA_02121 0.73 -0.5 2,273,190 + CCNA_02121 0.73 -1.3 2,273,190 + CCNA_02121 0.73 -1.7 2,273,252 + CCNA_02121 0.75 -0.8 2,273,260 - CCNA_02121 0.76 -1.7 2,273,260 - CCNA_02121 0.76 -2.0 2,273,277 + +1.8 2,273,311 + CCNA_02121 0.78 -1.4 2,273,320 + CCNA_02121 0.78 +0.3 2,273,333 - CCNA_02121 0.78 -1.5 2,273,337 + CCNA_02121 0.79 -0.5 2,273,345 - CCNA_02121 0.79 -1.7 2,273,373 - CCNA_02121 0.80 -0.2 2,273,425 + CCNA_02121 0.82 -1.7 2,273,434 + CCNA_02121 0.82 +0.9 2,273,479 + CCNA_02121 0.84 -2.0 2,273,488 - CCNA_02121 0.84 -0.5 2,273,496 + CCNA_02121 0.85 -1.4 2,273,561 + CCNA_02121 0.87 +0.4 2,273,615 + CCNA_02121 0.89 +0.5 2,273,618 - CCNA_02121 0.89 -1.7 2,273,623 - CCNA_02121 0.90 +0.8 2,273,623 - CCNA_02121 0.90 -0.8 2,273,637 + +0.8 2,273,759 + -1.8 2,273,759 + +0.8 2,273,762 - -0.2 2,273,765 + -1.0 2,273,780 - -3.5 2,273,974 + CCNA_02122 0.13 +0.2 2,273,974 + CCNA_02122 0.13 -0.2 2,273,995 + CCNA_02122 0.16 -1.7 2,274,061 - CCNA_02122 0.25 -0.1 2,274,089 - CCNA_02122 0.29 -1.4 2,274,183 + CCNA_02122 0.42 +1.2 2,274,207 + CCNA_02122 0.45 -2.7 2,274,219 + CCNA_02122 0.47 -0.0 2,274,229 + CCNA_02122 0.49 -1.7 2,274,237 - CCNA_02122 0.50 -2.5 2,274,237 - CCNA_02122 0.50 -0.7 2,274,269 - CCNA_02122 0.54 -1.5 2,274,270 - CCNA_02122 0.54 -0.1 2,274,280 - CCNA_02122 0.56 -1.4 2,274,367 + CCNA_02122 0.68 -2.2 2,274,367 + CCNA_02122 0.68 +0.3 2,274,375 - CCNA_02122 0.69 +0.3 2,274,380 + CCNA_02122 0.70 -1.8 2,274,453 - CCNA_02122 0.80 -1.5 2,274,532 - -1.1 2,274,556 - +0.0 2,274,576 - -0.7
Or see this region's nucleotide sequence