Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01030

Experiment: PYE with Paraquat dichloride 0.015 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Paraquat dichloride 0.015 mg/ml
1,117,884	-		CCNA_01029	0.70	-1.9
1,117,903	+		CCNA_01029	0.70	-0.5
1,117,903	+		CCNA_01029	0.70	-0.1
1,117,906	-		CCNA_01029	0.70	-1.4
1,117,911	-		CCNA_01029	0.71	+1.1
1,117,911	-		CCNA_01029	0.71	+0.5
1,117,944	-		CCNA_01029	0.72	-1.9
1,117,948	-		CCNA_01029	0.72	-0.6
1,118,030	+		CCNA_01029	0.74	+0.0
1,118,031	-		CCNA_01029	0.75	+1.1
1,118,066	-		CCNA_01029	0.76	-0.5
1,118,072	+		CCNA_01029	0.76	+1.5
1,118,072	+		CCNA_01029	0.76	-0.4
1,118,138	-		CCNA_01029	0.78	+1.2
1,118,138	-		CCNA_01029	0.78	+1.9
1,118,157	-		CCNA_01029	0.79	+1.4
1,118,167	+		CCNA_01029	0.79	-0.1
1,118,167	+		CCNA_01029	0.79	-0.5
1,118,167	+		CCNA_01029	0.79	-2.3
1,118,167	+		CCNA_01029	0.79	-0.8
1,118,167	+		CCNA_01029	0.79	-0.7
1,118,167	+		CCNA_01029	0.79	-1.1
1,118,167	+		CCNA_01029	0.79	+2.7
1,118,175	-		CCNA_01029	0.79	-1.7
1,118,175	-		CCNA_01029	0.79	-1.1
1,118,203	+		CCNA_01029	0.80	-1.4
1,118,203	+		CCNA_01029	0.80	-0.9
1,118,203	+		CCNA_01029	0.80	+0.8
1,118,203	+		CCNA_01029	0.80	-0.3
1,118,203	+		CCNA_01029	0.80	-1.8
1,118,211	-		CCNA_01029	0.80	-1.6
1,118,211	-		CCNA_01029	0.80	+1.1
1,118,211	-		CCNA_01029	0.80	+0.1
1,118,211	-		CCNA_01029	0.80	-1.7
1,118,211	-		CCNA_01029	0.80	+0.9
1,118,213	+		CCNA_01029	0.80	-1.2
1,118,296	-		CCNA_01029	0.83	-0.4
1,118,301	-		CCNA_01029	0.83	-1.5
1,118,307	+		CCNA_01029	0.83	-0.2
1,118,308	+		CCNA_01029	0.83	-0.1
1,118,317	-		CCNA_01029	0.84	-0.1
1,118,393	+		CCNA_01029	0.86	-1.4
1,118,476	+		CCNA_01029	0.89	-1.0
1,118,479	-		CCNA_01029	0.89	-0.6
1,118,486	+		CCNA_01029	0.89	-0.8
1,118,499	-		CCNA_01029	0.90	-0.6
1,118,536	+				-0.7
1,118,536	+				-1.1
1,118,536	+				+0.2
1,118,536	+				-1.0
1,118,536	+				-0.9
1,118,544	-				+1.6
1,118,544	-				-1.1
1,118,544	-				-0.1
1,118,544	-				-0.9
1,118,544	-				-1.2
1,118,544	-				+0.7
1,118,544	-				+1.1
1,118,561	-				+0.5
1,118,569	-				-1.5
1,118,619	+				-0.9
1,118,627	-				+0.5
1,118,663	-				+0.8
1,118,683	+				+0.1
1,118,689	+				+0.1
1,118,697	+				-1.6
1,118,705	-				-1.7
1,118,736	+				-1.2
1,118,744	-				-1.2
1,118,744	-				-1.1
1,118,744	-				-1.0
1,118,757	-				+1.0
1,118,784	+				-0.1
1,118,817	+				-1.9
1,118,842	-				-0.8
1,118,869	-				+0.5
1,118,876	-				+1.1
1,118,883	+				+0.4
1,118,890	-				+2.1
1,118,906	+				-0.2
1,118,995	+		CCNA_01030	0.18	+0.4
1,118,995	+		CCNA_01030	0.18	-0.9
1,118,995	+		CCNA_01030	0.18	-2.4
1,118,995	+		CCNA_01030	0.18	-0.8
1,118,995	+		CCNA_01030	0.18	-0.9
1,119,003	-		CCNA_01030	0.19	-0.1
1,119,003	-		CCNA_01030	0.19	-0.7
1,119,003	-		CCNA_01030	0.19	-0.5
1,119,003	-		CCNA_01030	0.19	-1.8
1,119,003	-		CCNA_01030	0.19	+0.6
1,119,016	+		CCNA_01030	0.21	-1.9
1,119,026	+		CCNA_01030	0.23	+0.7
1,119,026	+				+2.5
1,119,026	+		CCNA_01030	0.23	+0.3
1,119,026	+		CCNA_01030	0.23	+0.2
1,119,026	+		CCNA_01030	0.23	-0.5
1,119,031	+		CCNA_01030	0.24	+1.4
1,119,031	+		CCNA_01030	0.24	-1.4
1,119,031	+		CCNA_01030	0.24	-1.0
1,119,031	+		CCNA_01030	0.24	+0.9
1,119,031	+		CCNA_01030	0.24	-2.0
1,119,031	+		CCNA_01030	0.24	-1.0
1,119,031	+		CCNA_01030	0.24	-1.6
1,119,031	+		CCNA_01030	0.24	-0.9
1,119,031	+		CCNA_01030	0.24	+0.2
1,119,031	+		CCNA_01030	0.24	-2.0
1,119,034	-		CCNA_01030	0.24	-1.7
1,119,034	-		CCNA_01030	0.24	-1.2
1,119,034	-		CCNA_01030	0.24	+0.2
1,119,039	-		CCNA_01030	0.25	+1.2
1,119,039	-		CCNA_01030	0.25	-2.2
1,119,039	-		CCNA_01030	0.25	+1.3
1,119,039	-		CCNA_01030	0.25	-2.1
1,119,039	-		CCNA_01030	0.25	-0.3
1,119,039	-		CCNA_01030	0.25	-1.8
1,119,039	-		CCNA_01030	0.25	+0.6
1,119,039	-		CCNA_01030	0.25	+0.7
1,119,039	-		CCNA_01030	0.25	+0.3
1,119,039	-		CCNA_01030	0.25	-0.5
1,119,039	-		CCNA_01030	0.25	-1.0
1,119,039	-		CCNA_01030	0.25	-1.9
1,119,039	-		CCNA_01030	0.25	-0.2
1,119,039	-		CCNA_01030	0.25	+2.0
1,119,039	-		CCNA_01030	0.25	-0.3
1,119,039	-		CCNA_01030	0.25	-0.9
1,119,039	-		CCNA_01030	0.25	-0.2
1,119,051	+		CCNA_01030	0.27	-0.1
1,119,068	+		CCNA_01030	0.30	-2.4
1,119,068	+		CCNA_01030	0.30	-1.5
1,119,075	+		CCNA_01030	0.31	-1.6
1,119,076	-		CCNA_01030	0.31	+0.9
1,119,081	-		CCNA_01030	0.32	+1.0
1,119,107	-		CCNA_01030	0.36	-1.6
1,119,123	-		CCNA_01030	0.39	-1.3
1,119,140	-		CCNA_01030	0.41	-0.2
1,119,149	+		CCNA_01030	0.43	-1.3
1,119,161	+		CCNA_01030	0.45	-0.4
1,119,164	-		CCNA_01030	0.45	-2.3
1,119,214	+		CCNA_01030	0.53	-1.3
1,119,214	+		CCNA_01030	0.53	+0.2
1,119,215	+		CCNA_01030	0.54	+0.7
1,119,215	+		CCNA_01030	0.54	-1.7
1,119,215	+		CCNA_01030	0.54	-0.8
1,119,223	-		CCNA_01030	0.55	-2.3
1,119,223	-		CCNA_01030	0.55	+0.7
1,119,223	-		CCNA_01030	0.55	-1.6
1,119,229	-		CCNA_01030	0.56	-2.2
1,119,234	-		CCNA_01030	0.57	+0.4
1,119,241	-		CCNA_01030	0.58	+0.9
1,119,254	+		CCNA_01030	0.60	-0.9
1,119,254	+		CCNA_01030	0.60	-1.7
1,119,254	+		CCNA_01030	0.60	-1.7
1,119,254	+		CCNA_01030	0.60	-0.8
1,119,262	-		CCNA_01030	0.61	+1.5
1,119,262	-		CCNA_01030	0.61	-0.3
1,119,262	-		CCNA_01030	0.61	-1.7
1,119,272	+		CCNA_01030	0.63	-0.7
1,119,295	-		CCNA_01030	0.67	+0.9
1,119,349	-		CCNA_01030	0.75	+1.1
1,119,352	-		CCNA_01030	0.76	+0.1
1,119,352	-		CCNA_01030	0.76	-0.6
1,119,417	+		CCNA_01030	0.86	+0.2
1,119,442	-				-1.8
1,119,452	-				-0.4
1,119,495	-				-1.9
1,119,626	-				-0.3
1,119,633	+				-0.6
1,119,633	+				-2.4
1,119,641	-				-0.7
1,119,656	-				+1.6
1,119,665	+				-1.4
1,119,678	+				-1.8
1,119,686	-				+0.1
1,119,689	+				-2.0
1,119,697	+				-2.8
1,119,704	-				-1.4
1,119,704	-				-2.0
1,119,705	-				+2.2
1,119,705	-				-1.4
1,119,706	+				+0.1
1,119,721	-				-2.3
1,119,721	-				+0.1
1,119,735	-				+1.9
1,119,776	+				-1.5
1,119,784	-				-1.3
1,119,784	-				-0.9
1,119,784	-				-1.5
1,119,792	+				+0.2
1,119,825	+				-1.5
1,119,870	+		CCNA_01031	0.10	-0.3
1,119,870	+		CCNA_01031	0.10	-0.3
1,119,872	-		CCNA_01031	0.10	-0.4
1,119,872	-		CCNA_01031	0.10	-0.1
1,119,877	-		CCNA_01031	0.11	-0.9
1,119,886	-		CCNA_01031	0.11	-0.3
1,119,995	+		CCNA_01031	0.18	+0.4
1,120,014	+		CCNA_01031	0.19	-1.7
1,120,031	+		CCNA_01031	0.20	+1.2
1,120,034	-		CCNA_01031	0.20	-0.2
1,120,039	-		CCNA_01031	0.20	-1.7
1,120,044	-		CCNA_01031	0.21	-0.9
1,120,059	+		CCNA_01031	0.22	-2.7
1,120,064	+		CCNA_01031	0.22	-1.4
1,120,064	+		CCNA_01031	0.22	-0.4
1,120,079	+		CCNA_01031	0.23	+1.3
1,120,079	+		CCNA_01031	0.23	-1.9
1,120,079	+		CCNA_01031	0.23	-1.1
1,120,086	+		CCNA_01031	0.23	-1.8
1,120,087	-		CCNA_01031	0.23	-0.5
1,120,094	-		CCNA_01031	0.24	-2.9
1,120,094	-		CCNA_01031	0.24	-0.7
1,120,158	+		CCNA_01031	0.28	-2.4
1,120,209	-		CCNA_01031	0.31	+0.5
1,120,215	+		CCNA_01031	0.31	-2.2
1,120,223	-		CCNA_01031	0.32	-0.5
1,120,243	+		CCNA_01031	0.33	-0.3
1,120,253	-		CCNA_01031	0.33	+0.6
1,120,255	+		CCNA_01031	0.34	-0.4
1,120,269	-		CCNA_01031	0.34	-0.8
1,120,272	+		CCNA_01031	0.35	+0.8
1,120,277	+		CCNA_01031	0.35	-1.6
1,120,280	-		CCNA_01031	0.35	-1.9
1,120,288	+		CCNA_01031	0.36	-1.5
1,120,293	+		CCNA_01031	0.36	-2.4
1,120,303	+		CCNA_01031	0.36	-1.8
1,120,316	+		CCNA_01031	0.37	-1.6
1,120,326	+		CCNA_01031	0.38	+2.4
1,120,326	+		CCNA_01031	0.38	-1.1
1,120,334	-		CCNA_01031	0.38	+0.3
1,120,334	-		CCNA_01031	0.38	+0.4
1,120,334	-		CCNA_01031	0.38	-1.1
1,120,372	+		CCNA_01031	0.41	-1.1
1,120,380	-		CCNA_01031	0.41	+0.1
1,120,380	-		CCNA_01031	0.41	+0.5
1,120,423	+		CCNA_01031	0.44	-0.2
1,120,431	-		CCNA_01031	0.44	-0.5
1,120,452	+		CCNA_01031	0.45	-1.8
1,120,458	+		CCNA_01031	0.46	-2.0
1,120,459	-		CCNA_01031	0.46	+0.4
1,120,475	+		CCNA_01031	0.47	+0.2
1,120,477	+		CCNA_01031	0.47	-1.8
1,120,477	+		CCNA_01031	0.47	+0.1
1,120,487	+		CCNA_01031	0.48	-0.7
1,120,492	+		CCNA_01031	0.48	-0.2
1,120,492	+		CCNA_01031	0.48	+0.1
1,120,492	+		CCNA_01031	0.48	-0.3
1,120,499	+		CCNA_01031	0.48	-0.1
1,120,499	+		CCNA_01031	0.48	+0.4
1,120,500	-		CCNA_01031	0.48	+0.9
1,120,500	-		CCNA_01031	0.48	+0.5
1,120,500	-		CCNA_01031	0.48	-1.2
1,120,500	-		CCNA_01031	0.48	-0.6
1,120,500	-		CCNA_01031	0.48	+0.5
1,120,500	-		CCNA_01031	0.48	+0.9
1,120,500	-		CCNA_01031	0.48	+0.2
1,120,500	-		CCNA_01031	0.48	-1.0
1,120,500	-		CCNA_01031	0.48	+0.4