Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00853

Experiment: PYE with Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00851 and CCNA_00852 are separated by 167 nucleotidesCCNA_00852 and CCNA_00853 overlap by 4 nucleotidesCCNA_00853 and CCNA_00854 are separated by 129 nucleotides CCNA_00851: CCNA_00851 - periplasmic multidrug efflux lipoprotein precursor, at 926,304 to 927,470 _00851 CCNA_00852: CCNA_00852 - TetR family transcriptional regulator, at 927,638 to 928,252 _00852 CCNA_00853: CCNA_00853 - 3-isopropylmalate dehydrogenase, at 928,249 to 929,016 _00853 CCNA_00854: CCNA_00854 - metallo-beta-lactamase protein, at 929,146 to 930,738 _00854 Position (kb) 928 929 930Strain fitness (log2 ratio) -2 -1 0 1 2at 927.259 kb on - strand, within CCNA_00851at 927.307 kb on - strand, within CCNA_00851at 927.307 kb on - strand, within CCNA_00851at 927.311 kb on + strand, within CCNA_00851at 927.311 kb on + strand, within CCNA_00851at 927.311 kb on + strand, within CCNA_00851at 927.311 kb on + strand, within CCNA_00851at 927.313 kb on + strand, within CCNA_00851at 927.319 kb on - strand, within CCNA_00851at 927.319 kb on - strand, within CCNA_00851at 927.319 kb on - strand, within CCNA_00851at 927.319 kb on - strand, within CCNA_00851at 927.319 kb on - strand, within CCNA_00851at 927.361 kb on + strandat 927.369 kb on - strandat 927.372 kb on + strandat 927.373 kb on - strandat 927.397 kb on - strandat 927.410 kb on - strandat 927.471 kb on + strandat 927.485 kb on + strandat 927.502 kb on + strandat 927.508 kb on + strandat 927.508 kb on + strandat 927.510 kb on - strandat 927.566 kb on - strandat 927.643 kb on + strandat 927.687 kb on + strandat 927.855 kb on + strand, within CCNA_00852at 927.988 kb on + strand, within CCNA_00852at 928.064 kb on + strand, within CCNA_00852at 928.176 kb on + strand, within CCNA_00852at 928.176 kb on + strand, within CCNA_00852at 928.241 kb on + strandat 928.246 kb on + strandat 928.254 kb on - strandat 928.256 kb on + strandat 928.256 kb on + strandat 928.256 kb on + strandat 928.266 kb on + strandat 928.266 kb on + strandat 928.274 kb on - strandat 928.287 kb on - strandat 928.299 kb on - strandat 928.299 kb on - strandat 928.337 kb on - strand, within CCNA_00853at 928.412 kb on - strand, within CCNA_00853at 928.460 kb on - strand, within CCNA_00853at 928.460 kb on - strand, within CCNA_00853at 928.461 kb on - strand, within CCNA_00853at 928.468 kb on - strand, within CCNA_00853at 928.470 kb on + strand, within CCNA_00853at 928.507 kb on - strand, within CCNA_00853at 928.525 kb on + strand, within CCNA_00853at 928.535 kb on + strand, within CCNA_00853at 928.572 kb on + strand, within CCNA_00853at 928.580 kb on - strand, within CCNA_00853at 928.622 kb on - strand, within CCNA_00853at 928.670 kb on + strand, within CCNA_00853at 928.688 kb on - strand, within CCNA_00853at 928.699 kb on + strand, within CCNA_00853at 928.719 kb on + strand, within CCNA_00853at 928.785 kb on + strand, within CCNA_00853at 928.795 kb on - strand, within CCNA_00853at 928.799 kb on - strand, within CCNA_00853at 928.824 kb on - strand, within CCNA_00853at 928.837 kb on + strand, within CCNA_00853at 928.860 kb on - strand, within CCNA_00853at 928.863 kb on + strand, within CCNA_00853at 928.897 kb on - strand, within CCNA_00853at 928.900 kb on + strand, within CCNA_00853at 928.996 kb on + strandat 928.996 kb on + strandat 929.002 kb on - strandat 929.002 kb on - strandat 929.041 kb on - strandat 929.070 kb on + strandat 929.076 kb on + strandat 929.076 kb on + strandat 929.076 kb on + strandat 929.076 kb on + strandat 929.078 kb on - strandat 929.078 kb on - strandat 929.084 kb on - strandat 929.102 kb on + strandat 929.107 kb on + strandat 929.128 kb on - strandat 929.196 kb on - strandat 929.217 kb on + strandat 929.217 kb on + strandat 929.222 kb on + strandat 929.225 kb on - strandat 929.230 kb on - strandat 929.300 kb on + strandat 929.300 kb on + strandat 929.308 kb on - strand, within CCNA_00854at 929.310 kb on + strand, within CCNA_00854at 929.310 kb on + strand, within CCNA_00854at 929.310 kb on + strand, within CCNA_00854at 929.310 kb on + strand, within CCNA_00854at 929.318 kb on - strand, within CCNA_00854at 929.318 kb on - strand, within CCNA_00854at 929.318 kb on - strand, within CCNA_00854at 929.320 kb on + strand, within CCNA_00854at 929.323 kb on + strand, within CCNA_00854at 929.331 kb on - strand, within CCNA_00854at 929.334 kb on + strand, within CCNA_00854at 929.342 kb on - strand, within CCNA_00854at 929.388 kb on - strand, within CCNA_00854at 929.414 kb on + strand, within CCNA_00854at 929.422 kb on - strand, within CCNA_00854at 929.453 kb on + strand, within CCNA_00854at 929.453 kb on - strand, within CCNA_00854at 929.476 kb on + strand, within CCNA_00854at 929.486 kb on + strand, within CCNA_00854at 929.523 kb on + strand, within CCNA_00854at 929.523 kb on + strand, within CCNA_00854at 929.523 kb on + strand, within CCNA_00854at 929.523 kb on + strand, within CCNA_00854at 929.523 kb on + strand, within CCNA_00854at 929.523 kb on + strand, within CCNA_00854at 929.523 kb on + strand, within CCNA_00854at 929.527 kb on - strand, within CCNA_00854at 929.531 kb on - strand, within CCNA_00854at 929.531 kb on - strand, within CCNA_00854at 929.531 kb on - strand, within CCNA_00854at 929.531 kb on - strand, within CCNA_00854at 929.531 kb on - strand, within CCNA_00854at 929.543 kb on - strand, within CCNA_00854at 929.550 kb on - strand, within CCNA_00854at 929.570 kb on + strand, within CCNA_00854at 929.570 kb on + strand, within CCNA_00854at 929.571 kb on + strand, within CCNA_00854at 929.599 kb on + strand, within CCNA_00854at 929.607 kb on - strand, within CCNA_00854at 929.607 kb on - strand, within CCNA_00854at 929.633 kb on + strand, within CCNA_00854at 929.637 kb on - strand, within CCNA_00854at 929.641 kb on - strand, within CCNA_00854at 929.641 kb on - strand, within CCNA_00854at 929.679 kb on - strand, within CCNA_00854at 929.685 kb on + strand, within CCNA_00854at 929.685 kb on + strand, within CCNA_00854at 929.694 kb on + strand, within CCNA_00854at 929.703 kb on - strand, within CCNA_00854at 929.711 kb on + strand, within CCNA_00854at 929.711 kb on + strand, within CCNA_00854at 929.744 kb on + strand, within CCNA_00854at 929.752 kb on - strand, within CCNA_00854at 929.844 kb on + strand, within CCNA_00854at 929.861 kb on - strand, within CCNA_00854at 929.915 kb on + strand, within CCNA_00854at 929.915 kb on + strand, within CCNA_00854at 929.945 kb on + strand, within CCNA_00854at 929.945 kb on - strand, within CCNA_00854

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.015 mg/ml
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927,259 - CCNA_00851 0.82 -1.6
927,307 - CCNA_00851 0.86 +0.9
927,307 - CCNA_00851 0.86 +0.7
927,311 + CCNA_00851 0.86 +0.5
927,311 + CCNA_00851 0.86 +2.4
927,311 + CCNA_00851 0.86 -0.9
927,311 + CCNA_00851 0.86 -0.7
927,313 + CCNA_00851 0.86 +0.9
927,319 - CCNA_00851 0.87 -2.6
927,319 - CCNA_00851 0.87 +0.3
927,319 - CCNA_00851 0.87 -2.6
927,319 - CCNA_00851 0.87 -1.3
927,319 - CCNA_00851 0.87 -0.2
927,361 + -0.8
927,369 - -1.1
927,372 + -1.3
927,373 - -2.5
927,397 - -1.9
927,410 - -1.0
927,471 + +0.2
927,485 + -0.6
927,502 + -0.7
927,508 + +1.7
927,508 + -0.0
927,510 - +1.5
927,566 - +1.9
927,643 + +0.9
927,687 + +0.8
927,855 + CCNA_00852 0.35 +1.2
927,988 + CCNA_00852 0.57 +0.4
928,064 + CCNA_00852 0.69 -0.3
928,176 + CCNA_00852 0.87 +1.3
928,176 + CCNA_00852 0.87 +1.2
928,241 + +1.0
928,246 + -0.3
928,254 - +0.0
928,256 + -0.2
928,256 + +1.1
928,256 + +1.1
928,266 + +0.6
928,266 + -1.3
928,274 - +0.6
928,287 - -0.8
928,299 - -0.0
928,299 - -0.9
928,337 - CCNA_00853 0.11 +0.3
928,412 - CCNA_00853 0.21 -1.6
928,460 - CCNA_00853 0.27 +0.4
928,460 - CCNA_00853 0.27 -0.4
928,461 - CCNA_00853 0.28 -1.4
928,468 - CCNA_00853 0.29 -0.3
928,470 + CCNA_00853 0.29 -2.0
928,507 - CCNA_00853 0.34 +1.0
928,525 + CCNA_00853 0.36 -1.8
928,535 + CCNA_00853 0.37 -0.9
928,572 + CCNA_00853 0.42 -0.0
928,580 - CCNA_00853 0.43 +0.2
928,622 - CCNA_00853 0.49 +1.2
928,670 + CCNA_00853 0.55 -1.6
928,688 - CCNA_00853 0.57 -0.6
928,699 + CCNA_00853 0.59 +1.1
928,719 + CCNA_00853 0.61 -0.6
928,785 + CCNA_00853 0.70 -1.7
928,795 - CCNA_00853 0.71 -0.2
928,799 - CCNA_00853 0.72 -1.0
928,824 - CCNA_00853 0.75 -0.8
928,837 + CCNA_00853 0.77 -1.2
928,860 - CCNA_00853 0.80 +1.0
928,863 + CCNA_00853 0.80 -1.1
928,897 - CCNA_00853 0.84 -1.5
928,900 + CCNA_00853 0.85 -0.4
928,996 + -0.9
928,996 + -1.7
929,002 - -1.2
929,002 - +0.3
929,041 - +2.1
929,070 + -0.9
929,076 + +1.9
929,076 + +1.6
929,076 + +1.5
929,076 + +1.1
929,078 - +0.1
929,078 - +0.5
929,084 - +1.1
929,102 + -0.3
929,107 + +0.3
929,128 - -0.0
929,196 - +0.5
929,217 + -1.8
929,217 + -0.4
929,222 + -0.1
929,225 - -1.3
929,230 - -2.3
929,300 + -0.3
929,300 + +2.1
929,308 - CCNA_00854 0.10 -0.8
929,310 + CCNA_00854 0.10 +2.4
929,310 + CCNA_00854 0.10 -0.7
929,310 + CCNA_00854 0.10 -0.8
929,310 + CCNA_00854 0.10 -1.5
929,318 - CCNA_00854 0.11 -1.0
929,318 - CCNA_00854 0.11 -1.4
929,318 - CCNA_00854 0.11 -1.2
929,320 + CCNA_00854 0.11 -0.2
929,323 + CCNA_00854 0.11 +0.8
929,331 - CCNA_00854 0.12 +0.8
929,334 + CCNA_00854 0.12 +0.6
929,342 - CCNA_00854 0.12 +1.0
929,388 - CCNA_00854 0.15 -0.1
929,414 + CCNA_00854 0.17 +0.5
929,422 - CCNA_00854 0.17 +0.2
929,453 + CCNA_00854 0.19 +1.8
929,453 - CCNA_00854 0.19 -1.9
929,476 + CCNA_00854 0.21 +2.0
929,486 + CCNA_00854 0.21 -2.4
929,523 + CCNA_00854 0.24 -1.1
929,523 + CCNA_00854 0.24 -1.4
929,523 + CCNA_00854 0.24 -2.4
929,523 + CCNA_00854 0.24 +0.5
929,523 + CCNA_00854 0.24 -0.1
929,523 + CCNA_00854 0.24 +0.9
929,523 + CCNA_00854 0.24 -0.7
929,527 - CCNA_00854 0.24 -0.4
929,531 - CCNA_00854 0.24 -1.8
929,531 - CCNA_00854 0.24 -1.9
929,531 - CCNA_00854 0.24 -0.4
929,531 - CCNA_00854 0.24 +0.1
929,531 - CCNA_00854 0.24 -1.0
929,543 - CCNA_00854 0.25 -1.4
929,550 - CCNA_00854 0.25 -0.3
929,570 + CCNA_00854 0.27 +0.1
929,570 + CCNA_00854 0.27 +1.3
929,571 + CCNA_00854 0.27 -1.3
929,599 + CCNA_00854 0.28 -0.6
929,607 - CCNA_00854 0.29 -1.0
929,607 - CCNA_00854 0.29 -0.7
929,633 + CCNA_00854 0.31 -1.7
929,637 - CCNA_00854 0.31 -0.3
929,641 - CCNA_00854 0.31 -0.4
929,641 - CCNA_00854 0.31 +0.8
929,679 - CCNA_00854 0.33 -0.6
929,685 + CCNA_00854 0.34 -0.9
929,685 + CCNA_00854 0.34 +0.3
929,694 + CCNA_00854 0.34 +1.2
929,703 - CCNA_00854 0.35 +1.3
929,711 + CCNA_00854 0.35 +0.3
929,711 + CCNA_00854 0.35 -1.0
929,744 + CCNA_00854 0.38 +0.9
929,752 - CCNA_00854 0.38 -1.3
929,844 + CCNA_00854 0.44 -2.2
929,861 - CCNA_00854 0.45 +0.5
929,915 + CCNA_00854 0.48 -1.9
929,915 + CCNA_00854 0.48 -0.0
929,945 + CCNA_00854 0.50 +0.9
929,945 - CCNA_00854 0.50 +0.3

Or see this region's nucleotide sequence