Experiment: PYE with Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03885 and CCNA_00514 are separated by 143 nucleotides CCNA_00514 and CCNA_00515 are separated by 415 nucleotides
CCNA_03885: CCNA_03885 - Abi superfamily/CAAX amino terminal protease, at 527,284 to 527,934
_03885
CCNA_00514: CCNA_00514 - pirin, at 528,078 to 528,908
_00514
CCNA_00515: CCNA_00515 - 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase, at 529,324 to 531,657
_00515
Position (kb) 528
529 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 527.088 kb on + strand at 527.114 kb on + strand at 527.134 kb on + strand at 527.134 kb on + strand at 527.139 kb on + strand at 527.140 kb on - strand at 527.140 kb on - strand at 527.142 kb on - strand at 527.142 kb on - strand at 527.142 kb on - strand at 527.145 kb on + strand at 527.168 kb on + strand at 527.168 kb on + strand at 527.168 kb on + strand at 527.193 kb on - strand at 527.226 kb on + strand at 527.231 kb on + strand at 527.239 kb on - strand at 527.239 kb on - strand at 527.239 kb on - strand at 527.244 kb on - strand at 527.272 kb on + strand at 527.280 kb on - strand at 527.321 kb on - strand at 527.326 kb on - strand at 527.362 kb on + strand, within CCNA_03885 at 527.362 kb on + strand, within CCNA_03885 at 527.362 kb on + strand, within CCNA_03885 at 527.372 kb on + strand, within CCNA_03885 at 527.372 kb on + strand, within CCNA_03885 at 527.431 kb on + strand, within CCNA_03885 at 527.444 kb on + strand, within CCNA_03885 at 527.467 kb on - strand, within CCNA_03885 at 527.467 kb on - strand, within CCNA_03885 at 527.494 kb on + strand, within CCNA_03885 at 527.494 kb on + strand, within CCNA_03885 at 527.502 kb on - strand, within CCNA_03885 at 527.549 kb on - strand, within CCNA_03885 at 527.622 kb on + strand, within CCNA_03885 at 527.629 kb on - strand, within CCNA_03885 at 527.638 kb on + strand, within CCNA_03885 at 527.645 kb on + strand, within CCNA_03885 at 527.645 kb on + strand, within CCNA_03885 at 527.709 kb on - strand, within CCNA_03885 at 527.709 kb on - strand, within CCNA_03885 at 527.740 kb on + strand, within CCNA_03885 at 527.812 kb on + strand, within CCNA_03885 at 527.815 kb on - strand, within CCNA_03885 at 527.830 kb on - strand, within CCNA_03885 at 527.844 kb on + strand, within CCNA_03885 at 527.844 kb on + strand, within CCNA_03885 at 527.845 kb on + strand, within CCNA_03885 at 527.852 kb on - strand, within CCNA_03885 at 527.858 kb on - strand, within CCNA_03885 at 527.898 kb on + strand at 527.900 kb on + strand at 527.900 kb on + strand at 527.900 kb on + strand at 527.900 kb on + strand at 527.900 kb on + strand at 527.908 kb on + strand at 527.908 kb on + strand at 527.973 kb on - strand at 527.978 kb on - strand at 527.984 kb on - strand at 528.003 kb on + strand at 528.010 kb on - strand at 528.083 kb on + strand at 528.110 kb on + strand at 528.116 kb on + strand at 528.124 kb on - strand at 528.124 kb on - strand at 528.124 kb on - strand at 528.130 kb on + strand at 528.143 kb on + strand at 528.151 kb on - strand at 528.170 kb on + strand, within CCNA_00514 at 528.179 kb on - strand, within CCNA_00514 at 528.205 kb on + strand, within CCNA_00514 at 528.224 kb on - strand, within CCNA_00514 at 528.260 kb on - strand, within CCNA_00514 at 528.266 kb on + strand, within CCNA_00514 at 528.272 kb on - strand, within CCNA_00514 at 528.302 kb on - strand, within CCNA_00514 at 528.311 kb on + strand, within CCNA_00514 at 528.311 kb on + strand, within CCNA_00514 at 528.319 kb on - strand, within CCNA_00514 at 528.330 kb on + strand, within CCNA_00514 at 528.337 kb on - strand, within CCNA_00514 at 528.338 kb on - strand, within CCNA_00514 at 528.369 kb on + strand, within CCNA_00514 at 528.405 kb on + strand, within CCNA_00514 at 528.405 kb on + strand, within CCNA_00514 at 528.413 kb on - strand, within CCNA_00514 at 528.424 kb on + strand, within CCNA_00514 at 528.424 kb on + strand, within CCNA_00514 at 528.432 kb on - strand, within CCNA_00514 at 528.432 kb on - strand, within CCNA_00514 at 528.436 kb on + strand, within CCNA_00514 at 528.436 kb on + strand, within CCNA_00514 at 528.621 kb on + strand, within CCNA_00514 at 528.645 kb on - strand, within CCNA_00514 at 528.645 kb on - strand, within CCNA_00514 at 528.662 kb on + strand, within CCNA_00514 at 528.690 kb on + strand, within CCNA_00514 at 528.690 kb on + strand, within CCNA_00514 at 528.698 kb on - strand, within CCNA_00514 at 528.713 kb on - strand, within CCNA_00514 at 528.757 kb on - strand, within CCNA_00514 at 528.777 kb on + strand, within CCNA_00514 at 528.802 kb on - strand, within CCNA_00514 at 528.832 kb on + strand at 528.856 kb on + strand at 528.864 kb on + strand at 528.864 kb on - strand at 528.878 kb on - strand at 528.902 kb on + strand at 528.910 kb on - strand at 528.915 kb on - strand at 528.972 kb on + strand at 529.040 kb on - strand at 529.074 kb on - strand at 529.127 kb on + strand at 529.147 kb on + strand at 529.147 kb on + strand at 529.152 kb on + strand at 529.155 kb on - strand at 529.155 kb on - strand at 529.155 kb on - strand at 529.160 kb on - strand at 529.189 kb on - strand at 529.264 kb on + strand at 529.371 kb on - strand at 529.398 kb on + strand at 529.405 kb on + strand at 529.423 kb on + strand at 529.429 kb on - strand at 529.439 kb on - strand at 529.449 kb on - strand at 529.450 kb on - strand at 529.527 kb on - strand at 529.539 kb on - strand at 529.544 kb on - strand at 529.570 kb on + strand, within CCNA_00515 at 529.570 kb on + strand, within CCNA_00515 at 529.570 kb on + strand, within CCNA_00515 at 529.570 kb on + strand, within CCNA_00515 at 529.578 kb on - strand, within CCNA_00515 at 529.630 kb on + strand, within CCNA_00515 at 529.638 kb on - strand, within CCNA_00515 at 529.638 kb on - strand, within CCNA_00515 at 529.660 kb on + strand, within CCNA_00515 at 529.674 kb on - strand, within CCNA_00515 at 529.810 kb on + strand, within CCNA_00515 at 529.849 kb on - strand, within CCNA_00515 at 529.869 kb on + strand, within CCNA_00515 at 529.878 kb on + strand, within CCNA_00515 at 529.878 kb on + strand, within CCNA_00515 at 529.884 kb on + strand, within CCNA_00515 at 529.884 kb on + strand, within CCNA_00515 at 529.884 kb on + strand, within CCNA_00515 at 529.884 kb on + strand, within CCNA_00515 at 529.886 kb on - strand, within CCNA_00515 at 529.892 kb on - strand, within CCNA_00515 at 529.892 kb on - strand, within CCNA_00515 at 529.898 kb on - strand, within CCNA_00515
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.015 mg/ml remove 527,088 + -0.3 527,114 + -1.4 527,134 + -0.7 527,134 + -0.2 527,139 + +0.9 527,140 - +1.0 527,140 - -1.9 527,142 - -0.8 527,142 - -1.9 527,142 - +1.4 527,145 + -0.3 527,168 + +0.9 527,168 + -1.1 527,168 + -0.9 527,193 - -1.1 527,226 + +1.7 527,231 + -0.7 527,239 - +0.0 527,239 - -2.3 527,239 - +1.1 527,244 - +0.8 527,272 + -1.8 527,280 - -2.3 527,321 - -1.2 527,326 - -1.3 527,362 + CCNA_03885 0.12 +1.1 527,362 + CCNA_03885 0.12 +0.0 527,362 + CCNA_03885 0.12 -1.4 527,372 + CCNA_03885 0.14 +2.1 527,372 + CCNA_03885 0.14 +1.8 527,431 + CCNA_03885 0.23 -0.8 527,444 + CCNA_03885 0.25 -1.4 527,467 - CCNA_03885 0.28 +0.6 527,467 - CCNA_03885 0.28 -1.5 527,494 + CCNA_03885 0.32 -0.4 527,494 + CCNA_03885 0.32 -1.3 527,502 - CCNA_03885 0.33 +1.1 527,549 - CCNA_03885 0.41 -1.3 527,622 + CCNA_03885 0.52 +0.6 527,629 - CCNA_03885 0.53 -0.4 527,638 + CCNA_03885 0.54 -0.2 527,645 + CCNA_03885 0.55 +2.0 527,645 + CCNA_03885 0.55 +2.1 527,709 - CCNA_03885 0.65 -1.4 527,709 - CCNA_03885 0.65 -1.8 527,740 + CCNA_03885 0.70 +1.2 527,812 + CCNA_03885 0.81 +0.6 527,815 - CCNA_03885 0.82 +0.3 527,830 - CCNA_03885 0.84 -0.4 527,844 + CCNA_03885 0.86 +1.2 527,844 + CCNA_03885 0.86 +0.2 527,845 + CCNA_03885 0.86 +0.8 527,852 - CCNA_03885 0.87 -1.6 527,858 - CCNA_03885 0.88 -0.2 527,898 + +0.5 527,900 + +2.0 527,900 + -0.3 527,900 + +0.5 527,900 + +0.9 527,900 + -0.8 527,908 + +0.0 527,908 + +2.0 527,973 - +1.7 527,978 - +0.0 527,984 - -2.0 528,003 + -0.1 528,010 - -0.1 528,083 + -2.2 528,110 + -0.5 528,116 + -0.1 528,124 - -0.4 528,124 - -1.0 528,124 - -2.3 528,130 + -0.8 528,143 + -0.8 528,151 - -1.9 528,170 + CCNA_00514 0.11 +0.4 528,179 - CCNA_00514 0.12 -0.4 528,205 + CCNA_00514 0.15 +1.0 528,224 - CCNA_00514 0.18 -0.6 528,260 - CCNA_00514 0.22 +0.4 528,266 + CCNA_00514 0.23 -1.6 528,272 - CCNA_00514 0.23 -1.5 528,302 - CCNA_00514 0.27 -1.2 528,311 + CCNA_00514 0.28 +0.9 528,311 + CCNA_00514 0.28 -1.3 528,319 - CCNA_00514 0.29 -0.8 528,330 + CCNA_00514 0.30 +0.4 528,337 - CCNA_00514 0.31 -0.1 528,338 - CCNA_00514 0.31 +1.7 528,369 + CCNA_00514 0.35 -1.3 528,405 + CCNA_00514 0.39 +0.4 528,405 + CCNA_00514 0.39 +0.8 528,413 - CCNA_00514 0.40 -1.3 528,424 + CCNA_00514 0.42 +0.2 528,424 + CCNA_00514 0.42 +0.3 528,432 - CCNA_00514 0.43 -0.5 528,432 - CCNA_00514 0.43 -0.4 528,436 + CCNA_00514 0.43 -1.4 528,436 + CCNA_00514 0.43 -1.0 528,621 + CCNA_00514 0.65 +1.4 528,645 - CCNA_00514 0.68 +1.2 528,645 - CCNA_00514 0.68 -1.1 528,662 + CCNA_00514 0.70 -0.5 528,690 + CCNA_00514 0.74 +2.3 528,690 + CCNA_00514 0.74 +0.7 528,698 - CCNA_00514 0.75 -0.6 528,713 - CCNA_00514 0.76 +1.7 528,757 - CCNA_00514 0.82 +0.1 528,777 + CCNA_00514 0.84 +1.4 528,802 - CCNA_00514 0.87 +0.7 528,832 + +2.2 528,856 + +1.7 528,864 + -0.3 528,864 - -0.8 528,878 - -0.2 528,902 + -1.1 528,910 - +1.7 528,915 - +0.9 528,972 + +0.6 529,040 - -0.9 529,074 - +0.9 529,127 + -0.9 529,147 + +0.3 529,147 + -1.3 529,152 + +0.0 529,155 - -1.0 529,155 - +4.0 529,155 - -0.5 529,160 - -1.1 529,189 - -1.7 529,264 + +0.3 529,371 - -0.1 529,398 + +0.6 529,405 + +0.6 529,423 + +0.3 529,429 - -0.2 529,439 - -0.9 529,449 - -1.3 529,450 - -0.3 529,527 - +1.4 529,539 - -2.5 529,544 - -0.6 529,570 + CCNA_00515 0.11 +0.5 529,570 + CCNA_00515 0.11 +0.9 529,570 + CCNA_00515 0.11 -1.2 529,570 + CCNA_00515 0.11 +0.8 529,578 - CCNA_00515 0.11 +0.4 529,630 + CCNA_00515 0.13 +0.0 529,638 - CCNA_00515 0.13 -0.8 529,638 - CCNA_00515 0.13 +0.2 529,660 + CCNA_00515 0.14 +0.4 529,674 - CCNA_00515 0.15 +0.6 529,810 + CCNA_00515 0.21 -1.2 529,849 - CCNA_00515 0.22 -2.4 529,869 + CCNA_00515 0.23 -2.8 529,878 + CCNA_00515 0.24 +1.6 529,878 + CCNA_00515 0.24 +0.9 529,884 + CCNA_00515 0.24 +0.8 529,884 + CCNA_00515 0.24 +0.3 529,884 + CCNA_00515 0.24 +0.0 529,884 + CCNA_00515 0.24 -1.8 529,886 - CCNA_00515 0.24 -1.4 529,892 - CCNA_00515 0.24 +0.4 529,892 - CCNA_00515 0.24 -1.1 529,898 - CCNA_00515 0.25 -0.5
Or see this region's nucleotide sequence