Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21575 and CA265_RS21580 are separated by 574 nucleotides CA265_RS21580 and CA265_RS21585 are separated by 69 nucleotides CA265_RS21585 and CA265_RS21590 are separated by 139 nucleotides CA265_RS21590 and CA265_RS21595 are separated by 94 nucleotides
CA265_RS21575: CA265_RS21575 - RNA polymerase subunit sigma, at 5,311,570 to 5,312,151
_RS21575
CA265_RS21580: CA265_RS21580 - QacE family quaternary ammonium compound efflux SMR transporter, at 5,312,726 to 5,313,046
_RS21580
CA265_RS21585: CA265_RS21585 - cyclic nucleotide-binding protein, at 5,313,116 to 5,313,682
_RS21585
CA265_RS21590: CA265_RS21590 - hypothetical protein, at 5,313,822 to 5,314,187
_RS21590
CA265_RS21595: CA265_RS21595 - esterase, at 5,314,282 to 5,314,704
_RS21595
Position (kb) 5313
5314 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5312.128 kb on + strand at 5312.182 kb on + strand at 5312.183 kb on - strand at 5312.249 kb on - strand at 5312.252 kb on - strand at 5312.413 kb on - strand at 5312.506 kb on - strand at 5312.568 kb on - strand at 5312.774 kb on - strand, within CA265_RS21580 at 5312.774 kb on - strand, within CA265_RS21580 at 5312.871 kb on + strand, within CA265_RS21580 at 5312.872 kb on - strand, within CA265_RS21580 at 5312.872 kb on - strand, within CA265_RS21580 at 5312.872 kb on - strand, within CA265_RS21580 at 5313.050 kb on - strand at 5313.069 kb on + strand at 5313.070 kb on - strand at 5313.117 kb on + strand at 5313.117 kb on + strand at 5313.168 kb on + strand at 5313.168 kb on + strand at 5313.178 kb on + strand, within CA265_RS21585 at 5313.199 kb on + strand, within CA265_RS21585 at 5313.221 kb on + strand, within CA265_RS21585 at 5313.221 kb on + strand, within CA265_RS21585 at 5313.266 kb on + strand, within CA265_RS21585 at 5313.284 kb on - strand, within CA265_RS21585 at 5313.290 kb on + strand, within CA265_RS21585 at 5313.333 kb on - strand, within CA265_RS21585 at 5313.346 kb on - strand, within CA265_RS21585 at 5313.435 kb on + strand, within CA265_RS21585 at 5313.510 kb on + strand, within CA265_RS21585 at 5313.511 kb on - strand, within CA265_RS21585 at 5313.540 kb on + strand, within CA265_RS21585 at 5313.541 kb on - strand, within CA265_RS21585 at 5313.575 kb on + strand, within CA265_RS21585 at 5313.576 kb on - strand, within CA265_RS21585 at 5313.618 kb on - strand, within CA265_RS21585 at 5313.744 kb on - strand at 5313.755 kb on - strand at 5313.755 kb on - strand at 5313.764 kb on - strand at 5313.792 kb on - strand at 5313.826 kb on + strand at 5314.046 kb on - strand, within CA265_RS21590 at 5314.170 kb on - strand at 5314.186 kb on - strand at 5314.186 kb on - strand at 5314.198 kb on + strand at 5314.198 kb on + strand at 5314.199 kb on - strand at 5314.202 kb on - strand at 5314.204 kb on + strand at 5314.205 kb on - strand at 5314.296 kb on + strand at 5314.386 kb on + strand, within CA265_RS21595 at 5314.390 kb on + strand, within CA265_RS21595 at 5314.390 kb on + strand, within CA265_RS21595 at 5314.391 kb on - strand, within CA265_RS21595 at 5314.391 kb on - strand, within CA265_RS21595 at 5314.473 kb on - strand, within CA265_RS21595 at 5314.488 kb on + strand, within CA265_RS21595 at 5314.494 kb on + strand, within CA265_RS21595 at 5314.496 kb on + strand, within CA265_RS21595 at 5314.496 kb on + strand, within CA265_RS21595 at 5314.497 kb on - strand, within CA265_RS21595 at 5314.506 kb on + strand, within CA265_RS21595 at 5314.553 kb on - strand, within CA265_RS21595
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 5,312,128 + -0.9 5,312,182 + -0.3 5,312,183 - +0.5 5,312,249 - -0.3 5,312,252 - +0.4 5,312,413 - -0.4 5,312,506 - +0.3 5,312,568 - -0.6 5,312,774 - CA265_RS21580 0.15 -1.5 5,312,774 - CA265_RS21580 0.15 -0.2 5,312,871 + CA265_RS21580 0.45 -0.6 5,312,872 - CA265_RS21580 0.45 -0.0 5,312,872 - CA265_RS21580 0.45 -0.0 5,312,872 - CA265_RS21580 0.45 +0.6 5,313,050 - -1.2 5,313,069 + +0.4 5,313,070 - -0.1 5,313,117 + +1.0 5,313,117 + -0.9 5,313,168 + +0.6 5,313,168 + -0.0 5,313,178 + CA265_RS21585 0.11 +0.7 5,313,199 + CA265_RS21585 0.15 -1.0 5,313,221 + CA265_RS21585 0.19 +0.1 5,313,221 + CA265_RS21585 0.19 -0.4 5,313,266 + CA265_RS21585 0.26 -0.2 5,313,284 - CA265_RS21585 0.30 +1.9 5,313,290 + CA265_RS21585 0.31 +1.2 5,313,333 - CA265_RS21585 0.38 -2.7 5,313,346 - CA265_RS21585 0.41 +1.8 5,313,435 + CA265_RS21585 0.56 +0.8 5,313,510 + CA265_RS21585 0.69 +0.6 5,313,511 - CA265_RS21585 0.70 +0.9 5,313,540 + CA265_RS21585 0.75 -0.2 5,313,541 - CA265_RS21585 0.75 +1.2 5,313,575 + CA265_RS21585 0.81 -0.6 5,313,576 - CA265_RS21585 0.81 -2.6 5,313,618 - CA265_RS21585 0.89 -0.4 5,313,744 - -0.4 5,313,755 - -1.9 5,313,755 - +2.0 5,313,764 - -0.7 5,313,792 - -1.5 5,313,826 + -0.8 5,314,046 - CA265_RS21590 0.61 +1.7 5,314,170 - +0.5 5,314,186 - -1.3 5,314,186 - +0.5 5,314,198 + +0.9 5,314,198 + +0.9 5,314,199 - -0.1 5,314,202 - +0.3 5,314,204 + +1.5 5,314,205 - +0.2 5,314,296 + +0.4 5,314,386 + CA265_RS21595 0.25 +0.1 5,314,390 + CA265_RS21595 0.26 +1.4 5,314,390 + CA265_RS21595 0.26 -0.2 5,314,391 - CA265_RS21595 0.26 +0.6 5,314,391 - CA265_RS21595 0.26 -1.4 5,314,473 - CA265_RS21595 0.45 -1.8 5,314,488 + CA265_RS21595 0.49 -2.3 5,314,494 + CA265_RS21595 0.50 +0.2 5,314,496 + CA265_RS21595 0.51 -0.0 5,314,496 + CA265_RS21595 0.51 +0.3 5,314,497 - CA265_RS21595 0.51 -0.1 5,314,506 + CA265_RS21595 0.53 +0.5 5,314,553 - CA265_RS21595 0.64 +0.6
Or see this region's nucleotide sequence