Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03100 and CA265_RS03105 are separated by 31 nucleotides CA265_RS03105 and CA265_RS03110 are separated by 244 nucleotides CA265_RS03110 and CA265_RS03115 are separated by 68 nucleotides CA265_RS03115 and CA265_RS03120 are separated by 3 nucleotides
CA265_RS03100: CA265_RS03100 - glucose dehydrogenase, at 769,370 to 770,581
_RS03100
CA265_RS03105: CA265_RS03105 - hypothetical protein, at 770,613 to 770,792
_RS03105
CA265_RS03110: CA265_RS03110 - DUF58 domain-containing protein, at 771,037 to 771,954
_RS03110
CA265_RS03115: CA265_RS03115 - peroxiredoxin, at 772,023 to 772,484
_RS03115
CA265_RS03120: CA265_RS03120 - disulfide bond formation protein DsbA, at 772,488 to 773,006
_RS03120
Position (kb) 771
772 Strain fitness (log2 ratio) -1
0
1
2 at 770.103 kb on - strand, within CA265_RS03100 at 770.109 kb on - strand, within CA265_RS03100 at 770.116 kb on - strand, within CA265_RS03100 at 770.140 kb on + strand, within CA265_RS03100 at 770.247 kb on - strand, within CA265_RS03100 at 770.258 kb on + strand, within CA265_RS03100 at 770.260 kb on + strand, within CA265_RS03100 at 770.266 kb on + strand, within CA265_RS03100 at 770.351 kb on - strand, within CA265_RS03100 at 770.440 kb on - strand, within CA265_RS03100 at 770.453 kb on - strand, within CA265_RS03100 at 770.512 kb on - strand at 770.589 kb on - strand at 770.589 kb on - strand at 770.595 kb on - strand at 770.618 kb on + strand at 770.760 kb on - strand, within CA265_RS03105 at 770.795 kb on - strand at 770.853 kb on + strand at 770.853 kb on + strand at 770.854 kb on - strand at 770.908 kb on + strand at 770.954 kb on - strand at 770.969 kb on - strand at 771.025 kb on + strand at 771.025 kb on + strand at 771.052 kb on + strand at 771.101 kb on + strand at 771.101 kb on + strand at 771.104 kb on + strand at 771.180 kb on + strand, within CA265_RS03110 at 771.180 kb on + strand, within CA265_RS03110 at 771.183 kb on + strand, within CA265_RS03110 at 771.311 kb on - strand, within CA265_RS03110 at 771.373 kb on + strand, within CA265_RS03110 at 771.374 kb on - strand, within CA265_RS03110 at 771.417 kb on + strand, within CA265_RS03110 at 771.417 kb on + strand, within CA265_RS03110 at 771.473 kb on - strand, within CA265_RS03110 at 771.473 kb on - strand, within CA265_RS03110 at 771.476 kb on + strand, within CA265_RS03110 at 771.488 kb on + strand, within CA265_RS03110 at 771.510 kb on + strand, within CA265_RS03110 at 771.511 kb on - strand, within CA265_RS03110 at 771.516 kb on - strand, within CA265_RS03110 at 771.571 kb on - strand, within CA265_RS03110 at 771.602 kb on + strand, within CA265_RS03110 at 771.622 kb on - strand, within CA265_RS03110 at 771.622 kb on - strand, within CA265_RS03110 at 771.705 kb on + strand, within CA265_RS03110 at 771.781 kb on - strand, within CA265_RS03110 at 771.852 kb on - strand, within CA265_RS03110 at 771.866 kb on - strand at 771.868 kb on - strand at 771.925 kb on + strand at 772.022 kb on + strand at 772.022 kb on + strand at 772.022 kb on + strand at 772.042 kb on + strand at 772.042 kb on + strand at 772.204 kb on - strand, within CA265_RS03115 at 772.329 kb on + strand, within CA265_RS03115 at 772.361 kb on + strand, within CA265_RS03115 at 772.454 kb on - strand at 772.488 kb on - strand at 772.553 kb on - strand, within CA265_RS03120 at 772.588 kb on - strand, within CA265_RS03120 at 772.610 kb on + strand, within CA265_RS03120 at 772.736 kb on + strand, within CA265_RS03120 at 772.826 kb on - strand, within CA265_RS03120 at 772.869 kb on - strand, within CA265_RS03120 at 772.879 kb on + strand, within CA265_RS03120
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 770,103 - CA265_RS03100 0.60 +1.3 770,109 - CA265_RS03100 0.61 -0.0 770,116 - CA265_RS03100 0.62 +0.2 770,140 + CA265_RS03100 0.64 -0.6 770,247 - CA265_RS03100 0.72 +0.7 770,258 + CA265_RS03100 0.73 -0.2 770,260 + CA265_RS03100 0.73 -1.4 770,266 + CA265_RS03100 0.74 -1.5 770,351 - CA265_RS03100 0.81 +0.5 770,440 - CA265_RS03100 0.88 +0.4 770,453 - CA265_RS03100 0.89 -0.2 770,512 - -0.3 770,589 - -0.3 770,589 - +0.2 770,595 - +0.5 770,618 + +0.8 770,760 - CA265_RS03105 0.82 -0.6 770,795 - -0.5 770,853 + +0.4 770,853 + +0.2 770,854 - +1.0 770,908 + -0.3 770,954 - +0.9 770,969 - +1.2 771,025 + +0.5 771,025 + -0.4 771,052 + +0.1 771,101 + -0.1 771,101 + +0.9 771,104 + +0.1 771,180 + CA265_RS03110 0.16 +0.0 771,180 + CA265_RS03110 0.16 +1.0 771,183 + CA265_RS03110 0.16 -0.3 771,311 - CA265_RS03110 0.30 +0.3 771,373 + CA265_RS03110 0.37 +0.3 771,374 - CA265_RS03110 0.37 +0.2 771,417 + CA265_RS03110 0.41 +1.6 771,417 + CA265_RS03110 0.41 -0.7 771,473 - CA265_RS03110 0.47 -0.6 771,473 - CA265_RS03110 0.47 +2.3 771,476 + CA265_RS03110 0.48 +0.2 771,488 + CA265_RS03110 0.49 +1.8 771,510 + CA265_RS03110 0.52 -0.2 771,511 - CA265_RS03110 0.52 +0.7 771,516 - CA265_RS03110 0.52 -0.2 771,571 - CA265_RS03110 0.58 +0.2 771,602 + CA265_RS03110 0.62 +0.5 771,622 - CA265_RS03110 0.64 +0.4 771,622 - CA265_RS03110 0.64 +0.2 771,705 + CA265_RS03110 0.73 +0.4 771,781 - CA265_RS03110 0.81 +0.5 771,852 - CA265_RS03110 0.89 +0.5 771,866 - -0.3 771,868 - +0.2 771,925 + +0.0 772,022 + -0.4 772,022 + -0.0 772,022 + +0.1 772,042 + -1.0 772,042 + +1.2 772,204 - CA265_RS03115 0.39 -0.3 772,329 + CA265_RS03115 0.66 +0.2 772,361 + CA265_RS03115 0.73 -0.4 772,454 - -0.4 772,488 - +0.3 772,553 - CA265_RS03120 0.13 -1.2 772,588 - CA265_RS03120 0.19 -0.5 772,610 + CA265_RS03120 0.24 +2.3 772,736 + CA265_RS03120 0.48 -0.0 772,826 - CA265_RS03120 0.65 +0.2 772,869 - CA265_RS03120 0.73 -0.4 772,879 + CA265_RS03120 0.75 -1.0
Or see this region's nucleotide sequence