Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01755 and CA265_RS01760 overlap by 14 nucleotides CA265_RS01760 and CA265_RS01765 are separated by 4 nucleotides CA265_RS01765 and CA265_RS01770 overlap by 20 nucleotides
CA265_RS01755: CA265_RS01755 - hypothetical protein, at 441,818 to 443,002
_RS01755
CA265_RS01760: CA265_RS01760 - aminotransferase DegT, at 442,989 to 444,110
_RS01760
CA265_RS01765: CA265_RS01765 - hypothetical protein, at 444,115 to 444,870
_RS01765
CA265_RS01770: CA265_RS01770 - hypothetical protein, at 444,851 to 445,300
_RS01770
Position (kb) 442
443
444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 442.003 kb on - strand, within CA265_RS01755 at 442.030 kb on + strand, within CA265_RS01755 at 442.055 kb on + strand, within CA265_RS01755 at 442.055 kb on + strand, within CA265_RS01755 at 442.055 kb on + strand, within CA265_RS01755 at 442.055 kb on + strand, within CA265_RS01755 at 442.056 kb on - strand, within CA265_RS01755 at 442.074 kb on - strand, within CA265_RS01755 at 442.099 kb on + strand, within CA265_RS01755 at 442.122 kb on - strand, within CA265_RS01755 at 442.138 kb on + strand, within CA265_RS01755 at 442.142 kb on - strand, within CA265_RS01755 at 442.142 kb on - strand, within CA265_RS01755 at 442.142 kb on - strand, within CA265_RS01755 at 442.144 kb on - strand, within CA265_RS01755 at 442.144 kb on - strand, within CA265_RS01755 at 442.144 kb on - strand, within CA265_RS01755 at 442.181 kb on + strand, within CA265_RS01755 at 442.184 kb on + strand, within CA265_RS01755 at 442.229 kb on - strand, within CA265_RS01755 at 442.263 kb on - strand, within CA265_RS01755 at 442.270 kb on + strand, within CA265_RS01755 at 442.321 kb on - strand, within CA265_RS01755 at 442.353 kb on + strand, within CA265_RS01755 at 442.375 kb on + strand, within CA265_RS01755 at 442.479 kb on - strand, within CA265_RS01755 at 442.480 kb on + strand, within CA265_RS01755 at 442.518 kb on - strand, within CA265_RS01755 at 442.521 kb on - strand, within CA265_RS01755 at 442.599 kb on + strand, within CA265_RS01755 at 442.599 kb on + strand, within CA265_RS01755 at 442.600 kb on - strand, within CA265_RS01755 at 442.634 kb on + strand, within CA265_RS01755 at 442.634 kb on + strand, within CA265_RS01755 at 442.680 kb on - strand, within CA265_RS01755 at 442.680 kb on - strand, within CA265_RS01755 at 442.680 kb on - strand, within CA265_RS01755 at 442.682 kb on - strand, within CA265_RS01755 at 442.725 kb on + strand, within CA265_RS01755 at 442.991 kb on - strand at 442.992 kb on + strand at 443.019 kb on + strand at 443.139 kb on + strand, within CA265_RS01760 at 443.196 kb on + strand, within CA265_RS01760 at 443.196 kb on + strand, within CA265_RS01760 at 443.208 kb on - strand, within CA265_RS01760 at 443.335 kb on + strand, within CA265_RS01760 at 443.339 kb on + strand, within CA265_RS01760 at 443.340 kb on - strand, within CA265_RS01760 at 443.340 kb on - strand, within CA265_RS01760 at 443.340 kb on - strand, within CA265_RS01760 at 443.377 kb on - strand, within CA265_RS01760 at 443.394 kb on + strand, within CA265_RS01760 at 443.451 kb on + strand, within CA265_RS01760 at 443.452 kb on - strand, within CA265_RS01760 at 443.468 kb on + strand, within CA265_RS01760 at 443.579 kb on + strand, within CA265_RS01760 at 443.585 kb on + strand, within CA265_RS01760 at 443.689 kb on - strand, within CA265_RS01760 at 443.724 kb on - strand, within CA265_RS01760 at 443.825 kb on + strand, within CA265_RS01760 at 443.825 kb on + strand, within CA265_RS01760 at 443.837 kb on + strand, within CA265_RS01760 at 443.841 kb on + strand, within CA265_RS01760 at 443.977 kb on + strand, within CA265_RS01760 at 443.978 kb on - strand, within CA265_RS01760 at 443.978 kb on - strand, within CA265_RS01760 at 444.009 kb on - strand at 444.045 kb on - strand at 444.054 kb on + strand at 444.054 kb on + strand at 444.057 kb on - strand at 444.241 kb on - strand, within CA265_RS01765 at 444.270 kb on + strand, within CA265_RS01765 at 444.312 kb on + strand, within CA265_RS01765 at 444.313 kb on - strand, within CA265_RS01765 at 444.318 kb on - strand, within CA265_RS01765 at 444.322 kb on - strand, within CA265_RS01765 at 444.459 kb on + strand, within CA265_RS01765 at 444.463 kb on + strand, within CA265_RS01765 at 444.525 kb on + strand, within CA265_RS01765 at 444.525 kb on + strand, within CA265_RS01765 at 444.591 kb on + strand, within CA265_RS01765 at 444.591 kb on + strand, within CA265_RS01765 at 444.591 kb on + strand, within CA265_RS01765 at 444.686 kb on + strand, within CA265_RS01765 at 444.775 kb on - strand, within CA265_RS01765 at 444.786 kb on + strand, within CA265_RS01765 at 444.787 kb on - strand, within CA265_RS01765 at 444.787 kb on - strand, within CA265_RS01765 at 444.788 kb on + strand, within CA265_RS01765 at 444.789 kb on - strand, within CA265_RS01765 at 444.789 kb on - strand, within CA265_RS01765 at 445.093 kb on + strand, within CA265_RS01770 at 445.099 kb on - strand, within CA265_RS01770 at 445.104 kb on - strand, within CA265_RS01770
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 442,003 - CA265_RS01755 0.16 -0.2 442,030 + CA265_RS01755 0.18 -0.5 442,055 + CA265_RS01755 0.20 +0.6 442,055 + CA265_RS01755 0.20 +0.5 442,055 + CA265_RS01755 0.20 -0.0 442,055 + CA265_RS01755 0.20 +1.0 442,056 - CA265_RS01755 0.20 +0.7 442,074 - CA265_RS01755 0.22 -0.1 442,099 + CA265_RS01755 0.24 -0.4 442,122 - CA265_RS01755 0.26 +0.7 442,138 + CA265_RS01755 0.27 +1.1 442,142 - CA265_RS01755 0.27 -0.4 442,142 - CA265_RS01755 0.27 +0.3 442,142 - CA265_RS01755 0.27 +1.8 442,144 - CA265_RS01755 0.28 +0.4 442,144 - CA265_RS01755 0.28 +1.0 442,144 - CA265_RS01755 0.28 +0.5 442,181 + CA265_RS01755 0.31 +0.8 442,184 + CA265_RS01755 0.31 +1.8 442,229 - CA265_RS01755 0.35 -1.1 442,263 - CA265_RS01755 0.38 +0.5 442,270 + CA265_RS01755 0.38 -2.8 442,321 - CA265_RS01755 0.42 -0.2 442,353 + CA265_RS01755 0.45 +0.1 442,375 + CA265_RS01755 0.47 +0.6 442,479 - CA265_RS01755 0.56 +0.3 442,480 + CA265_RS01755 0.56 -0.1 442,518 - CA265_RS01755 0.59 +0.8 442,521 - CA265_RS01755 0.59 +1.8 442,599 + CA265_RS01755 0.66 +0.6 442,599 + CA265_RS01755 0.66 -1.2 442,600 - CA265_RS01755 0.66 +1.0 442,634 + CA265_RS01755 0.69 -0.1 442,634 + CA265_RS01755 0.69 -0.5 442,680 - CA265_RS01755 0.73 +0.8 442,680 - CA265_RS01755 0.73 +1.8 442,680 - CA265_RS01755 0.73 +0.9 442,682 - CA265_RS01755 0.73 -0.9 442,725 + CA265_RS01755 0.77 +0.2 442,991 - +0.1 442,992 + +0.5 443,019 + +0.2 443,139 + CA265_RS01760 0.13 +1.0 443,196 + CA265_RS01760 0.18 +0.8 443,196 + CA265_RS01760 0.18 +0.4 443,208 - CA265_RS01760 0.20 +0.4 443,335 + CA265_RS01760 0.31 +1.1 443,339 + CA265_RS01760 0.31 +0.5 443,340 - CA265_RS01760 0.31 +1.2 443,340 - CA265_RS01760 0.31 +1.0 443,340 - CA265_RS01760 0.31 +0.2 443,377 - CA265_RS01760 0.35 +0.0 443,394 + CA265_RS01760 0.36 -0.0 443,451 + CA265_RS01760 0.41 -0.8 443,452 - CA265_RS01760 0.41 -0.1 443,468 + CA265_RS01760 0.43 -0.2 443,579 + CA265_RS01760 0.53 +0.6 443,585 + CA265_RS01760 0.53 -0.4 443,689 - CA265_RS01760 0.62 +1.6 443,724 - CA265_RS01760 0.66 +0.7 443,825 + CA265_RS01760 0.75 +0.6 443,825 + CA265_RS01760 0.75 +1.6 443,837 + CA265_RS01760 0.76 +1.2 443,841 + CA265_RS01760 0.76 -1.2 443,977 + CA265_RS01760 0.88 -0.8 443,978 - CA265_RS01760 0.88 -0.3 443,978 - CA265_RS01760 0.88 +1.1 444,009 - -0.4 444,045 - -0.7 444,054 + -0.4 444,054 + +0.9 444,057 - -0.4 444,241 - CA265_RS01765 0.17 -0.6 444,270 + CA265_RS01765 0.21 -0.2 444,312 + CA265_RS01765 0.26 +1.3 444,313 - CA265_RS01765 0.26 -1.8 444,318 - CA265_RS01765 0.27 -0.9 444,322 - CA265_RS01765 0.27 -3.0 444,459 + CA265_RS01765 0.46 +0.5 444,463 + CA265_RS01765 0.46 +0.1 444,525 + CA265_RS01765 0.54 +0.4 444,525 + CA265_RS01765 0.54 +0.6 444,591 + CA265_RS01765 0.63 +0.2 444,591 + CA265_RS01765 0.63 +0.4 444,591 + CA265_RS01765 0.63 +0.2 444,686 + CA265_RS01765 0.76 -0.4 444,775 - CA265_RS01765 0.87 +0.1 444,786 + CA265_RS01765 0.89 -1.4 444,787 - CA265_RS01765 0.89 -0.2 444,787 - CA265_RS01765 0.89 -0.1 444,788 + CA265_RS01765 0.89 -0.8 444,789 - CA265_RS01765 0.89 +0.3 444,789 - CA265_RS01765 0.89 +0.8 445,093 + CA265_RS01770 0.54 +0.3 445,099 - CA265_RS01770 0.55 +0.5 445,104 - CA265_RS01770 0.56 -1.3
Or see this region's nucleotide sequence