Experiment: soil sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22280 and ABZR87_RS22285 are separated by 27 nucleotides ABZR87_RS22285 and ABZR87_RS22290 are separated by 212 nucleotides ABZR87_RS22290 and ABZR87_RS22295 are separated by 428 nucleotides
ABZR87_RS22280: ABZR87_RS22280 - flagellar hook assembly protein FlgD, at 1,359,367 to 1,360,023
_RS22280
ABZR87_RS22285: ABZR87_RS22285 - flagellar basal body rod protein FlgC, at 1,360,051 to 1,360,458
_RS22285
ABZR87_RS22290: ABZR87_RS22290 - flagellar basal body rod protein FlgB, at 1,360,671 to 1,361,126
_RS22290
ABZR87_RS22295: ABZR87_RS22295 - flagellar basal body P-ring formation chaperone FlgA, at 1,361,555 to 1,362,433
_RS22295
Position (kb) 1360
1361
1362 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1360.052 kb on + strand at 1360.121 kb on + strand, within ABZR87_RS22285 at 1360.121 kb on + strand, within ABZR87_RS22285 at 1360.122 kb on - strand, within ABZR87_RS22285 at 1360.188 kb on - strand, within ABZR87_RS22285 at 1360.286 kb on + strand, within ABZR87_RS22285 at 1360.287 kb on - strand, within ABZR87_RS22285 at 1360.432 kb on + strand at 1360.432 kb on + strand at 1360.432 kb on + strand at 1360.432 kb on + strand at 1360.432 kb on + strand at 1360.433 kb on - strand at 1360.433 kb on - strand at 1360.433 kb on - strand at 1360.433 kb on - strand at 1360.433 kb on - strand at 1360.451 kb on - strand at 1360.451 kb on - strand at 1360.451 kb on - strand at 1360.451 kb on - strand at 1360.522 kb on - strand at 1360.616 kb on + strand at 1360.616 kb on + strand at 1360.617 kb on - strand at 1360.617 kb on - strand at 1360.660 kb on + strand at 1360.660 kb on + strand at 1360.660 kb on + strand at 1360.660 kb on + strand at 1360.660 kb on + strand at 1360.661 kb on - strand at 1360.661 kb on - strand at 1360.661 kb on - strand at 1360.661 kb on - strand at 1360.661 kb on - strand at 1360.672 kb on + strand at 1360.673 kb on - strand at 1360.673 kb on - strand at 1360.673 kb on - strand at 1360.738 kb on + strand, within ABZR87_RS22290 at 1360.738 kb on + strand, within ABZR87_RS22290 at 1360.826 kb on - strand, within ABZR87_RS22290 at 1361.014 kb on + strand, within ABZR87_RS22290 at 1361.014 kb on + strand, within ABZR87_RS22290 at 1361.014 kb on + strand, within ABZR87_RS22290 at 1361.014 kb on + strand, within ABZR87_RS22290 at 1361.015 kb on - strand, within ABZR87_RS22290 at 1361.015 kb on - strand, within ABZR87_RS22290 at 1361.015 kb on - strand, within ABZR87_RS22290 at 1361.015 kb on - strand, within ABZR87_RS22290 at 1361.157 kb on + strand at 1361.158 kb on - strand at 1361.158 kb on - strand at 1361.208 kb on + strand at 1361.208 kb on + strand at 1361.351 kb on + strand at 1361.351 kb on + strand at 1361.352 kb on - strand at 1361.372 kb on + strand at 1361.373 kb on - strand at 1361.436 kb on + strand at 1361.436 kb on + strand at 1361.468 kb on + strand at 1361.468 kb on + strand at 1361.468 kb on + strand at 1361.469 kb on - strand at 1361.520 kb on + strand at 1361.520 kb on + strand at 1361.521 kb on - strand at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.107 kb on - strand, within ABZR87_RS22295
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 5; outgrowth in LB remove 1,360,052 + +2.0 1,360,121 + ABZR87_RS22285 0.17 +2.0 1,360,121 + ABZR87_RS22285 0.17 +2.1 1,360,122 - ABZR87_RS22285 0.17 +1.5 1,360,188 - ABZR87_RS22285 0.34 +1.3 1,360,286 + ABZR87_RS22285 0.58 +2.2 1,360,287 - ABZR87_RS22285 0.58 +2.0 1,360,432 + +2.0 1,360,432 + +2.3 1,360,432 + +2.6 1,360,432 + +1.1 1,360,432 + +2.1 1,360,433 - +1.0 1,360,433 - +1.8 1,360,433 - +2.1 1,360,433 - +1.8 1,360,433 - +1.2 1,360,451 - +1.6 1,360,451 - +1.7 1,360,451 - +2.2 1,360,451 - +1.8 1,360,522 - -0.2 1,360,616 + +2.2 1,360,616 + +1.1 1,360,617 - +0.2 1,360,617 - -0.8 1,360,660 + +1.5 1,360,660 + +2.0 1,360,660 + +2.3 1,360,660 + +1.6 1,360,660 + +1.4 1,360,661 - -2.2 1,360,661 - +0.2 1,360,661 - -0.8 1,360,661 - +0.3 1,360,661 - -1.1 1,360,672 + +1.7 1,360,673 - -1.4 1,360,673 - -0.6 1,360,673 - -0.4 1,360,738 + ABZR87_RS22290 0.15 +1.5 1,360,738 + ABZR87_RS22290 0.15 +1.1 1,360,826 - ABZR87_RS22290 0.34 +1.2 1,361,014 + ABZR87_RS22290 0.75 +2.1 1,361,014 + ABZR87_RS22290 0.75 +1.7 1,361,014 + ABZR87_RS22290 0.75 +0.3 1,361,014 + ABZR87_RS22290 0.75 +1.1 1,361,015 - ABZR87_RS22290 0.75 +1.6 1,361,015 - ABZR87_RS22290 0.75 +1.5 1,361,015 - ABZR87_RS22290 0.75 +0.3 1,361,015 - ABZR87_RS22290 0.75 +1.4 1,361,157 + +1.9 1,361,158 - -0.3 1,361,158 - -0.6 1,361,208 + +1.8 1,361,208 + +1.5 1,361,351 + +1.3 1,361,351 + +1.8 1,361,352 - -0.4 1,361,372 + +1.1 1,361,373 - +1.2 1,361,436 + +1.1 1,361,436 + +1.8 1,361,468 + +2.6 1,361,468 + +1.4 1,361,468 + +1.3 1,361,469 - +1.3 1,361,520 + -0.1 1,361,520 + -0.7 1,361,521 - -0.7 1,361,985 + ABZR87_RS22295 0.49 +2.0 1,361,985 + ABZR87_RS22295 0.49 +1.2 1,361,985 + ABZR87_RS22295 0.49 +1.5 1,361,985 + ABZR87_RS22295 0.49 +1.2 1,361,985 + ABZR87_RS22295 0.49 +1.6 1,361,985 + ABZR87_RS22295 0.49 +1.2 1,361,985 + ABZR87_RS22295 0.49 +1.4 1,361,985 + ABZR87_RS22295 0.49 +1.9 1,361,985 + ABZR87_RS22295 0.49 +1.4 1,361,985 + ABZR87_RS22295 0.49 +1.5 1,361,985 + ABZR87_RS22295 0.49 +1.0 1,361,985 + ABZR87_RS22295 0.49 +1.7 1,361,985 + ABZR87_RS22295 0.49 +1.2 1,361,986 - ABZR87_RS22295 0.49 +1.4 1,361,986 - ABZR87_RS22295 0.49 +1.0 1,361,986 - ABZR87_RS22295 0.49 +1.5 1,361,986 - ABZR87_RS22295 0.49 +1.7 1,361,986 - ABZR87_RS22295 0.49 +1.5 1,361,986 - ABZR87_RS22295 0.49 +1.1 1,361,986 - ABZR87_RS22295 0.49 +1.7 1,361,986 - ABZR87_RS22295 0.49 +1.1 1,361,986 - ABZR87_RS22295 0.49 +1.5 1,361,986 - ABZR87_RS22295 0.49 +2.0 1,361,986 - ABZR87_RS22295 0.49 +1.8 1,361,986 - ABZR87_RS22295 0.49 +1.4 1,361,986 - ABZR87_RS22295 0.49 +0.8 1,361,986 - ABZR87_RS22295 0.49 +1.7 1,361,986 - ABZR87_RS22295 0.49 +1.3 1,361,986 - ABZR87_RS22295 0.49 +1.2 1,361,986 - ABZR87_RS22295 0.49 +1.0 1,362,062 + ABZR87_RS22295 0.58 +1.5 1,362,062 + ABZR87_RS22295 0.58 +3.0 1,362,062 + ABZR87_RS22295 0.58 +1.7 1,362,062 + ABZR87_RS22295 0.58 +1.0 1,362,062 + ABZR87_RS22295 0.58 +2.1 1,362,062 + ABZR87_RS22295 0.58 +1.4 1,362,062 + ABZR87_RS22295 0.58 +0.6 1,362,062 + ABZR87_RS22295 0.58 +2.0 1,362,062 + ABZR87_RS22295 0.58 +1.4 1,362,062 + ABZR87_RS22295 0.58 +1.5 1,362,062 + ABZR87_RS22295 0.58 +1.7 1,362,063 - ABZR87_RS22295 0.58 +1.7 1,362,063 - ABZR87_RS22295 0.58 +1.8 1,362,063 - ABZR87_RS22295 0.58 +0.2 1,362,063 - ABZR87_RS22295 0.58 +0.7 1,362,063 - ABZR87_RS22295 0.58 +1.0 1,362,063 - ABZR87_RS22295 0.58 +2.2 1,362,063 - ABZR87_RS22295 0.58 +1.5 1,362,063 - ABZR87_RS22295 0.58 +1.4 1,362,063 - ABZR87_RS22295 0.58 +1.0 1,362,063 - ABZR87_RS22295 0.58 +1.2 1,362,065 + ABZR87_RS22295 0.58 +1.7 1,362,065 + ABZR87_RS22295 0.58 +1.3 1,362,065 + ABZR87_RS22295 0.58 +1.4 1,362,065 + ABZR87_RS22295 0.58 +1.4 1,362,065 + ABZR87_RS22295 0.58 +0.8 1,362,065 + ABZR87_RS22295 0.58 +1.1 1,362,065 + ABZR87_RS22295 0.58 +1.1 1,362,065 + ABZR87_RS22295 0.58 +1.5 1,362,065 + ABZR87_RS22295 0.58 +1.6 1,362,066 - ABZR87_RS22295 0.58 +1.1 1,362,066 - ABZR87_RS22295 0.58 +1.9 1,362,066 - ABZR87_RS22295 0.58 +1.2 1,362,066 - ABZR87_RS22295 0.58 +1.3 1,362,066 - ABZR87_RS22295 0.58 +1.8 1,362,066 - ABZR87_RS22295 0.58 +1.9 1,362,066 - ABZR87_RS22295 0.58 +1.0 1,362,066 - ABZR87_RS22295 0.58 +1.4 1,362,066 - ABZR87_RS22295 0.58 +0.6 1,362,066 - ABZR87_RS22295 0.58 +1.3 1,362,066 - ABZR87_RS22295 0.58 +0.3 1,362,066 - ABZR87_RS22295 0.58 +0.8 1,362,066 - ABZR87_RS22295 0.58 +1.3 1,362,107 - ABZR87_RS22295 0.63 +1.5
Or see this region's nucleotide sequence