Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22285

Experiment: soil sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22275 and ABZR87_RS22280 are separated by 54 nucleotidesABZR87_RS22280 and ABZR87_RS22285 are separated by 27 nucleotidesABZR87_RS22285 and ABZR87_RS22290 are separated by 212 nucleotides ABZR87_RS22275: ABZR87_RS22275 - flagellar hook protein FlgE, at 1,358,104 to 1,359,312 _RS22275 ABZR87_RS22280: ABZR87_RS22280 - flagellar hook assembly protein FlgD, at 1,359,367 to 1,360,023 _RS22280 ABZR87_RS22285: ABZR87_RS22285 - flagellar basal body rod protein FlgC, at 1,360,051 to 1,360,458 _RS22285 ABZR87_RS22290: ABZR87_RS22290 - flagellar basal body rod protein FlgB, at 1,360,671 to 1,361,126 _RS22290 Position (kb) 1360 1361Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1359.185 kb on + strand, within ABZR87_RS22275at 1359.185 kb on + strand, within ABZR87_RS22275at 1359.186 kb on - strand, within ABZR87_RS22275at 1359.218 kb on + strandat 1359.218 kb on + strandat 1359.219 kb on - strandat 1359.219 kb on - strandat 1359.326 kb on - strandat 1359.333 kb on - strandat 1359.333 kb on - strandat 1359.368 kb on + strandat 1359.369 kb on - strandat 1359.527 kb on + strand, within ABZR87_RS22280at 1359.527 kb on + strand, within ABZR87_RS22280at 1359.578 kb on + strand, within ABZR87_RS22280at 1359.578 kb on + strand, within ABZR87_RS22280at 1359.578 kb on + strand, within ABZR87_RS22280at 1359.578 kb on + strand, within ABZR87_RS22280at 1359.579 kb on - strand, within ABZR87_RS22280at 1359.579 kb on - strand, within ABZR87_RS22280at 1360.052 kb on + strandat 1360.121 kb on + strand, within ABZR87_RS22285at 1360.121 kb on + strand, within ABZR87_RS22285at 1360.122 kb on - strand, within ABZR87_RS22285at 1360.188 kb on - strand, within ABZR87_RS22285at 1360.286 kb on + strand, within ABZR87_RS22285at 1360.287 kb on - strand, within ABZR87_RS22285at 1360.432 kb on + strandat 1360.432 kb on + strandat 1360.432 kb on + strandat 1360.432 kb on + strandat 1360.432 kb on + strandat 1360.433 kb on - strandat 1360.433 kb on - strandat 1360.433 kb on - strandat 1360.433 kb on - strandat 1360.433 kb on - strandat 1360.451 kb on - strandat 1360.451 kb on - strandat 1360.451 kb on - strandat 1360.451 kb on - strandat 1360.522 kb on - strandat 1360.616 kb on + strandat 1360.616 kb on + strandat 1360.617 kb on - strandat 1360.617 kb on - strandat 1360.660 kb on + strandat 1360.660 kb on + strandat 1360.660 kb on + strandat 1360.660 kb on + strandat 1360.660 kb on + strandat 1360.661 kb on - strandat 1360.661 kb on - strandat 1360.661 kb on - strandat 1360.661 kb on - strandat 1360.661 kb on - strandat 1360.672 kb on + strandat 1360.673 kb on - strandat 1360.673 kb on - strandat 1360.673 kb on - strandat 1360.738 kb on + strand, within ABZR87_RS22290at 1360.738 kb on + strand, within ABZR87_RS22290at 1360.826 kb on - strand, within ABZR87_RS22290at 1361.014 kb on + strand, within ABZR87_RS22290at 1361.014 kb on + strand, within ABZR87_RS22290at 1361.014 kb on + strand, within ABZR87_RS22290at 1361.014 kb on + strand, within ABZR87_RS22290at 1361.015 kb on - strand, within ABZR87_RS22290at 1361.015 kb on - strand, within ABZR87_RS22290at 1361.015 kb on - strand, within ABZR87_RS22290at 1361.015 kb on - strand, within ABZR87_RS22290at 1361.157 kb on + strandat 1361.158 kb on - strandat 1361.158 kb on - strandat 1361.208 kb on + strandat 1361.208 kb on + strandat 1361.351 kb on + strandat 1361.351 kb on + strandat 1361.352 kb on - strandat 1361.372 kb on + strandat 1361.373 kb on - strandat 1361.436 kb on + strandat 1361.436 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 5; outgrowth in LB
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1,359,185 + ABZR87_RS22275 0.89 +2.2
1,359,185 + ABZR87_RS22275 0.89 +1.6
1,359,186 - ABZR87_RS22275 0.89 +1.8
1,359,218 + +1.5
1,359,218 + +0.2
1,359,219 - +1.8
1,359,219 - +1.5
1,359,326 - +0.8
1,359,333 - -0.8
1,359,333 - +0.3
1,359,368 + +2.2
1,359,369 - -0.3
1,359,527 + ABZR87_RS22280 0.24 +2.0
1,359,527 + ABZR87_RS22280 0.24 +1.8
1,359,578 + ABZR87_RS22280 0.32 +4.0
1,359,578 + ABZR87_RS22280 0.32 +1.5
1,359,578 + ABZR87_RS22280 0.32 +0.9
1,359,578 + ABZR87_RS22280 0.32 +1.6
1,359,579 - ABZR87_RS22280 0.32 -0.4
1,359,579 - ABZR87_RS22280 0.32 +0.0
1,360,052 + +2.0
1,360,121 + ABZR87_RS22285 0.17 +2.0
1,360,121 + ABZR87_RS22285 0.17 +2.1
1,360,122 - ABZR87_RS22285 0.17 +1.5
1,360,188 - ABZR87_RS22285 0.34 +1.3
1,360,286 + ABZR87_RS22285 0.58 +2.2
1,360,287 - ABZR87_RS22285 0.58 +2.0
1,360,432 + +2.0
1,360,432 + +2.3
1,360,432 + +2.6
1,360,432 + +1.1
1,360,432 + +2.1
1,360,433 - +1.0
1,360,433 - +1.8
1,360,433 - +2.1
1,360,433 - +1.8
1,360,433 - +1.2
1,360,451 - +1.6
1,360,451 - +1.7
1,360,451 - +2.2
1,360,451 - +1.8
1,360,522 - -0.2
1,360,616 + +2.2
1,360,616 + +1.1
1,360,617 - +0.2
1,360,617 - -0.8
1,360,660 + +1.5
1,360,660 + +2.0
1,360,660 + +2.3
1,360,660 + +1.6
1,360,660 + +1.4
1,360,661 - -2.2
1,360,661 - +0.2
1,360,661 - -0.8
1,360,661 - +0.3
1,360,661 - -1.1
1,360,672 + +1.7
1,360,673 - -1.4
1,360,673 - -0.6
1,360,673 - -0.4
1,360,738 + ABZR87_RS22290 0.15 +1.5
1,360,738 + ABZR87_RS22290 0.15 +1.1
1,360,826 - ABZR87_RS22290 0.34 +1.2
1,361,014 + ABZR87_RS22290 0.75 +2.1
1,361,014 + ABZR87_RS22290 0.75 +1.7
1,361,014 + ABZR87_RS22290 0.75 +0.3
1,361,014 + ABZR87_RS22290 0.75 +1.1
1,361,015 - ABZR87_RS22290 0.75 +1.6
1,361,015 - ABZR87_RS22290 0.75 +1.5
1,361,015 - ABZR87_RS22290 0.75 +0.3
1,361,015 - ABZR87_RS22290 0.75 +1.4
1,361,157 + +1.9
1,361,158 - -0.3
1,361,158 - -0.6
1,361,208 + +1.8
1,361,208 + +1.5
1,361,351 + +1.3
1,361,351 + +1.8
1,361,352 - -0.4
1,361,372 + +1.1
1,361,373 - +1.2
1,361,436 + +1.1
1,361,436 + +1.8

Or see this region's nucleotide sequence