Experiment: soil sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16950 and ABZR87_RS16955 are separated by 209 nucleotides ABZR87_RS16955 and ABZR87_RS16960 are separated by 8 nucleotides
ABZR87_RS16950: ABZR87_RS16950 - cytochrome c biogenesis protein DipZ, at 156,578 to 158,347
_RS16950
ABZR87_RS16955: ABZR87_RS16955 - response regulator, at 158,557 to 159,300
_RS16955
ABZR87_RS16960: ABZR87_RS16960 - HAMP domain-containing sensor histidine kinase, at 159,309 to 160,625
_RS16960
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1
2 at 157.693 kb on + strand, within ABZR87_RS16950 at 157.693 kb on + strand, within ABZR87_RS16950 at 157.693 kb on + strand, within ABZR87_RS16950 at 157.694 kb on - strand, within ABZR87_RS16950 at 157.694 kb on - strand, within ABZR87_RS16950 at 157.694 kb on - strand, within ABZR87_RS16950 at 157.834 kb on + strand, within ABZR87_RS16950 at 157.834 kb on + strand, within ABZR87_RS16950 at 157.835 kb on - strand, within ABZR87_RS16950 at 158.006 kb on - strand, within ABZR87_RS16950 at 158.088 kb on - strand, within ABZR87_RS16950 at 158.088 kb on - strand, within ABZR87_RS16950 at 158.241 kb on - strand at 158.241 kb on - strand at 158.325 kb on + strand at 158.325 kb on + strand at 158.333 kb on + strand at 158.334 kb on - strand at 158.334 kb on - strand at 158.413 kb on + strand at 158.413 kb on + strand at 158.414 kb on - strand at 158.414 kb on - strand at 158.414 kb on - strand at 158.414 kb on - strand at 158.414 kb on - strand at 158.414 kb on - strand at 158.435 kb on + strand at 158.436 kb on - strand at 158.445 kb on + strand at 158.445 kb on + strand at 158.446 kb on - strand at 158.446 kb on - strand at 158.446 kb on - strand at 158.446 kb on - strand at 158.474 kb on + strand at 158.474 kb on + strand at 158.475 kb on - strand at 158.626 kb on + strand at 158.627 kb on - strand at 158.627 kb on - strand at 158.627 kb on - strand at 158.627 kb on - strand at 158.798 kb on + strand, within ABZR87_RS16955 at 158.798 kb on + strand, within ABZR87_RS16955 at 158.799 kb on - strand, within ABZR87_RS16955 at 158.918 kb on + strand, within ABZR87_RS16955 at 158.918 kb on + strand, within ABZR87_RS16955 at 158.919 kb on - strand, within ABZR87_RS16955 at 159.065 kb on - strand, within ABZR87_RS16955 at 159.229 kb on + strand at 159.229 kb on + strand at 159.230 kb on - strand at 159.256 kb on + strand at 159.256 kb on + strand at 159.256 kb on + strand at 159.256 kb on + strand at 159.256 kb on + strand at 159.256 kb on + strand at 159.256 kb on + strand at 159.256 kb on + strand at 159.257 kb on - strand at 159.257 kb on - strand at 159.257 kb on - strand at 159.257 kb on - strand at 159.257 kb on - strand at 159.390 kb on + strand at 159.391 kb on - strand at 159.426 kb on + strand at 159.426 kb on + strand at 159.427 kb on - strand at 159.552 kb on + strand, within ABZR87_RS16960 at 159.553 kb on - strand, within ABZR87_RS16960 at 159.553 kb on - strand, within ABZR87_RS16960 at 159.553 kb on - strand, within ABZR87_RS16960 at 159.558 kb on + strand, within ABZR87_RS16960 at 159.558 kb on + strand, within ABZR87_RS16960 at 159.558 kb on + strand, within ABZR87_RS16960 at 159.559 kb on - strand, within ABZR87_RS16960 at 159.559 kb on - strand, within ABZR87_RS16960 at 159.559 kb on - strand, within ABZR87_RS16960 at 159.559 kb on - strand, within ABZR87_RS16960 at 159.781 kb on - strand, within ABZR87_RS16960 at 159.781 kb on - strand, within ABZR87_RS16960 at 160.149 kb on + strand, within ABZR87_RS16960 at 160.150 kb on - strand, within ABZR87_RS16960 at 160.224 kb on + strand, within ABZR87_RS16960 at 160.224 kb on + strand, within ABZR87_RS16960 at 160.224 kb on + strand, within ABZR87_RS16960 at 160.225 kb on - strand, within ABZR87_RS16960
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 5; outgrowth in LB remove 157,693 + ABZR87_RS16950 0.63 +0.2 157,693 + ABZR87_RS16950 0.63 +0.2 157,693 + ABZR87_RS16950 0.63 -0.1 157,694 - ABZR87_RS16950 0.63 -0.8 157,694 - ABZR87_RS16950 0.63 +0.7 157,694 - ABZR87_RS16950 0.63 +0.1 157,834 + ABZR87_RS16950 0.71 -0.4 157,834 + ABZR87_RS16950 0.71 +0.2 157,835 - ABZR87_RS16950 0.71 -0.5 158,006 - ABZR87_RS16950 0.81 +0.9 158,088 - ABZR87_RS16950 0.85 -0.2 158,088 - ABZR87_RS16950 0.85 -0.3 158,241 - -0.9 158,241 - -0.1 158,325 + -0.1 158,325 + -0.9 158,333 + -0.8 158,334 - -2.0 158,334 - +0.6 158,413 + +0.0 158,413 + -0.5 158,414 - +0.3 158,414 - -0.9 158,414 - +0.2 158,414 - -1.0 158,414 - +0.0 158,414 - +0.5 158,435 + -0.7 158,436 - -0.8 158,445 + -0.4 158,445 + +0.2 158,446 - -0.5 158,446 - -0.1 158,446 - -0.4 158,446 - -0.5 158,474 + +0.4 158,474 + -0.4 158,475 - -1.2 158,626 + -1.5 158,627 - +0.9 158,627 - -0.6 158,627 - -0.2 158,627 - +0.2 158,798 + ABZR87_RS16955 0.32 +0.6 158,798 + ABZR87_RS16955 0.32 -0.1 158,799 - ABZR87_RS16955 0.33 +0.1 158,918 + ABZR87_RS16955 0.49 +0.7 158,918 + ABZR87_RS16955 0.49 +0.5 158,919 - ABZR87_RS16955 0.49 +0.9 159,065 - ABZR87_RS16955 0.68 -0.3 159,229 + -0.2 159,229 + +0.5 159,230 - -0.2 159,256 + -1.0 159,256 + +0.2 159,256 + -0.4 159,256 + +0.2 159,256 + -0.1 159,256 + -1.3 159,256 + +0.4 159,256 + +0.9 159,257 - -0.8 159,257 - -1.0 159,257 - -0.1 159,257 - +0.2 159,257 - +0.6 159,390 + -1.2 159,391 - -1.0 159,426 + -0.4 159,426 + +1.9 159,427 - +0.5 159,552 + ABZR87_RS16960 0.18 -0.5 159,553 - ABZR87_RS16960 0.19 -1.2 159,553 - ABZR87_RS16960 0.19 -0.4 159,553 - ABZR87_RS16960 0.19 +0.0 159,558 + ABZR87_RS16960 0.19 +0.6 159,558 + ABZR87_RS16960 0.19 +0.3 159,558 + ABZR87_RS16960 0.19 +1.1 159,559 - ABZR87_RS16960 0.19 -1.0 159,559 - ABZR87_RS16960 0.19 +0.1 159,559 - ABZR87_RS16960 0.19 +0.5 159,559 - ABZR87_RS16960 0.19 -1.8 159,781 - ABZR87_RS16960 0.36 -0.4 159,781 - ABZR87_RS16960 0.36 -0.1 160,149 + ABZR87_RS16960 0.64 -0.8 160,150 - ABZR87_RS16960 0.64 +0.1 160,224 + ABZR87_RS16960 0.69 +0.1 160,224 + ABZR87_RS16960 0.69 -1.4 160,224 + ABZR87_RS16960 0.69 -1.1 160,225 - ABZR87_RS16960 0.70 -2.0
Or see this region's nucleotide sequence