Experiment: soil sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS14670 and ABZR87_RS14675 are separated by 9 nucleotides ABZR87_RS14675 and ABZR87_RS14680 overlap by 4 nucleotides ABZR87_RS14680 and ABZR87_RS14685 are separated by 119 nucleotides
ABZR87_RS14670: ABZR87_RS14670 - phosphotransferase, at 3,098,843 to 3,099,931
_RS14670
ABZR87_RS14675: ABZR87_RS14675 - glyoxalase, at 3,099,941 to 3,100,360
_RS14675
ABZR87_RS14680: ABZR87_RS14680 - SDR family oxidoreductase, at 3,100,357 to 3,101,070
_RS14680
ABZR87_RS14685: ABZR87_RS14685 - LysR family transcriptional regulator, at 3,101,190 to 3,102,176
_RS14685
Position (kb)
3100
3101
3102 Strain fitness (log2 ratio)
-1
0
1 at 3099.371 kb on + strand, within ABZR87_RS14670 at 3099.372 kb on - strand, within ABZR87_RS14670 at 3099.372 kb on - strand, within ABZR87_RS14670 at 3099.372 kb on - strand, within ABZR87_RS14670 at 3099.408 kb on - strand, within ABZR87_RS14670 at 3099.408 kb on - strand, within ABZR87_RS14670 at 3099.408 kb on - strand, within ABZR87_RS14670 at 3099.408 kb on - strand, within ABZR87_RS14670 at 3099.621 kb on - strand, within ABZR87_RS14670 at 3099.713 kb on + strand, within ABZR87_RS14670 at 3099.713 kb on + strand, within ABZR87_RS14670 at 3099.714 kb on - strand, within ABZR87_RS14670 at 3099.714 kb on - strand, within ABZR87_RS14670 at 3099.770 kb on + strand, within ABZR87_RS14670 at 3099.771 kb on - strand, within ABZR87_RS14670 at 3099.771 kb on - strand, within ABZR87_RS14670 at 3099.779 kb on + strand, within ABZR87_RS14670 at 3099.780 kb on - strand, within ABZR87_RS14670 at 3099.780 kb on - strand, within ABZR87_RS14670 at 3099.909 kb on - strand at 3099.963 kb on + strand at 3099.964 kb on - strand at 3100.148 kb on - strand, within ABZR87_RS14675 at 3100.360 kb on + strand at 3100.360 kb on + strand at 3100.361 kb on - strand at 3100.361 kb on - strand at 3100.410 kb on + strand at 3100.410 kb on + strand at 3100.706 kb on + strand, within ABZR87_RS14680 at 3100.899 kb on + strand, within ABZR87_RS14680 at 3101.148 kb on - strand at 3101.148 kb on - strand at 3101.391 kb on + strand, within ABZR87_RS14685 at 3101.622 kb on + strand, within ABZR87_RS14685 at 3101.622 kb on + strand, within ABZR87_RS14685 at 3101.700 kb on + strand, within ABZR87_RS14685 at 3101.701 kb on - strand, within ABZR87_RS14685 at 3101.834 kb on - strand, within ABZR87_RS14685 at 3101.834 kb on - strand, within ABZR87_RS14685 at 3102.008 kb on - strand, within ABZR87_RS14685
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 5; outgrowth in LB remove 3,099,371 + ABZR87_RS14670 0.48 +0.9 3,099,372 - ABZR87_RS14670 0.49 -0.6 3,099,372 - ABZR87_RS14670 0.49 +0.7 3,099,372 - ABZR87_RS14670 0.49 -0.0 3,099,408 - ABZR87_RS14670 0.52 -0.2 3,099,408 - ABZR87_RS14670 0.52 +0.1 3,099,408 - ABZR87_RS14670 0.52 -0.7 3,099,408 - ABZR87_RS14670 0.52 +0.2 3,099,621 - ABZR87_RS14670 0.71 +0.3 3,099,713 + ABZR87_RS14670 0.80 -0.8 3,099,713 + ABZR87_RS14670 0.80 -0.3 3,099,714 - ABZR87_RS14670 0.80 +0.3 3,099,714 - ABZR87_RS14670 0.80 +0.6 3,099,770 + ABZR87_RS14670 0.85 -0.6 3,099,771 - ABZR87_RS14670 0.85 +0.1 3,099,771 - ABZR87_RS14670 0.85 +0.5 3,099,779 + ABZR87_RS14670 0.86 +0.0 3,099,780 - ABZR87_RS14670 0.86 -0.4 3,099,780 - ABZR87_RS14670 0.86 +0.9 3,099,909 - +0.7 3,099,963 + +0.5 3,099,964 - -0.7 3,100,148 - ABZR87_RS14675 0.49 -0.4 3,100,360 + -0.3 3,100,360 + -0.4 3,100,361 - -0.3 3,100,361 - -0.1 3,100,410 + +0.6 3,100,410 + -0.4 3,100,706 + ABZR87_RS14680 0.49 -1.4 3,100,899 + ABZR87_RS14680 0.76 -1.0 3,101,148 - -1.2 3,101,148 - +0.0 3,101,391 + ABZR87_RS14685 0.20 -0.8 3,101,622 + ABZR87_RS14685 0.44 -0.3 3,101,622 + ABZR87_RS14685 0.44 -0.4 3,101,700 + ABZR87_RS14685 0.52 +0.2 3,101,701 - ABZR87_RS14685 0.52 -1.3 3,101,834 - ABZR87_RS14685 0.65 -0.8 3,101,834 - ABZR87_RS14685 0.65 -0.9 3,102,008 - ABZR87_RS14685 0.83 +1.3
Or see this region's nucleotide sequence