Experiment: soil sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS14220 and ABZR87_RS14225 are separated by 669 nucleotides ABZR87_RS14225 and ABZR87_RS14230 are separated by 71 nucleotides ABZR87_RS14230 and ABZR87_RS14235 are separated by 25 nucleotides
ABZR87_RS14220: ABZR87_RS14220 - PrkA family serine protein kinase, at 3,002,539 to 3,004,461
_RS14220
ABZR87_RS14225: ABZR87_RS14225 - tRNA-Val, at 3,005,131 to 3,005,205
_RS14225
ABZR87_RS14230: ABZR87_RS14230 - DNA polymerase III subunit epsilon, at 3,005,277 to 3,006,002
_RS14230
ABZR87_RS14235: ABZR87_RS14235 - formyltetrahydrofolate deformylase, at 3,006,028 to 3,006,894
_RS14235
Position (kb)
3005
3006 Strain fitness (log2 ratio)
-2
-1
0
1 at 3004.142 kb on + strand, within ABZR87_RS14220 at 3004.142 kb on + strand, within ABZR87_RS14220 at 3004.143 kb on - strand, within ABZR87_RS14220 at 3004.143 kb on - strand, within ABZR87_RS14220 at 3004.143 kb on - strand, within ABZR87_RS14220 at 3004.226 kb on + strand, within ABZR87_RS14220 at 3004.358 kb on + strand at 3004.384 kb on - strand at 3004.384 kb on - strand at 3004.391 kb on + strand at 3004.391 kb on + strand at 3004.406 kb on + strand at 3004.406 kb on + strand at 3004.407 kb on - strand at 3004.455 kb on + strand at 3004.455 kb on + strand at 3004.460 kb on + strand at 3004.461 kb on + strand at 3004.461 kb on + strand at 3004.461 kb on + strand at 3004.461 kb on + strand at 3004.461 kb on + strand at 3004.461 kb on + strand at 3004.462 kb on - strand at 3004.462 kb on - strand at 3004.473 kb on - strand at 3004.485 kb on + strand at 3004.485 kb on + strand at 3004.486 kb on - strand at 3004.486 kb on - strand at 3004.486 kb on - strand at 3004.514 kb on + strand at 3004.514 kb on + strand at 3004.514 kb on + strand at 3004.514 kb on + strand at 3004.515 kb on - strand at 3004.544 kb on + strand at 3004.544 kb on + strand at 3004.605 kb on + strand at 3004.605 kb on + strand at 3004.605 kb on + strand at 3004.605 kb on + strand at 3004.637 kb on + strand at 3004.637 kb on + strand at 3004.637 kb on + strand at 3004.745 kb on + strand at 3004.746 kb on - strand at 3004.746 kb on - strand at 3004.746 kb on - strand at 3004.746 kb on - strand at 3004.746 kb on - strand at 3004.746 kb on - strand at 3004.749 kb on + strand at 3004.749 kb on + strand at 3004.749 kb on + strand at 3004.749 kb on + strand at 3004.749 kb on + strand at 3004.750 kb on - strand at 3004.750 kb on - strand at 3004.750 kb on - strand at 3004.785 kb on + strand at 3004.786 kb on - strand at 3004.786 kb on - strand at 3004.831 kb on + strand at 3004.869 kb on + strand at 3004.869 kb on + strand at 3004.923 kb on + strand at 3004.923 kb on + strand at 3004.923 kb on + strand at 3004.924 kb on - strand at 3005.045 kb on - strand at 3005.111 kb on + strand at 3006.030 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 5; outgrowth in LB remove 3,004,142 + ABZR87_RS14220 0.83 +0.0 3,004,142 + ABZR87_RS14220 0.83 -0.2 3,004,143 - ABZR87_RS14220 0.83 -0.5 3,004,143 - ABZR87_RS14220 0.83 -0.2 3,004,143 - ABZR87_RS14220 0.83 +0.1 3,004,226 + ABZR87_RS14220 0.88 -0.2 3,004,358 + -0.1 3,004,384 - +0.1 3,004,384 - -0.1 3,004,391 + +0.2 3,004,391 + +0.3 3,004,406 + -1.1 3,004,406 + +0.5 3,004,407 - +0.1 3,004,455 + -1.0 3,004,455 + -0.9 3,004,460 + +0.0 3,004,461 + +0.1 3,004,461 + -0.2 3,004,461 + -0.2 3,004,461 + -0.0 3,004,461 + -0.1 3,004,461 + +0.2 3,004,462 - -0.5 3,004,462 - -0.6 3,004,473 - +0.5 3,004,485 + -0.1 3,004,485 + +0.0 3,004,486 - +0.5 3,004,486 - -0.5 3,004,486 - -0.1 3,004,514 + -0.2 3,004,514 + +0.4 3,004,514 + +0.2 3,004,514 + +0.3 3,004,515 - +0.8 3,004,544 + -0.1 3,004,544 + -0.4 3,004,605 + +1.0 3,004,605 + -0.2 3,004,605 + +0.3 3,004,605 + -0.8 3,004,637 + -2.0 3,004,637 + -0.1 3,004,637 + +0.3 3,004,745 + +0.4 3,004,746 - -0.0 3,004,746 - -0.2 3,004,746 - -1.0 3,004,746 - +1.4 3,004,746 - +0.4 3,004,746 - -0.7 3,004,749 + -0.0 3,004,749 + -1.0 3,004,749 + -0.1 3,004,749 + -0.7 3,004,749 + +0.0 3,004,750 - +0.2 3,004,750 - +0.3 3,004,750 - -1.7 3,004,785 + -0.5 3,004,786 - +0.5 3,004,786 - -0.4 3,004,831 + +0.5 3,004,869 + +0.5 3,004,869 + +0.5 3,004,923 + +0.4 3,004,923 + -0.6 3,004,923 + +1.3 3,004,924 - +0.4 3,005,045 - +0.0 3,005,111 + +0.5 3,006,030 - +0.0
Or see this region's nucleotide sequence