Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS12130

Experiment: soil sample 5; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS12120 and ABZR87_RS12125 are separated by 23 nucleotidesABZR87_RS12125 and ABZR87_RS12130 are separated by 9 nucleotidesABZR87_RS12130 and ABZR87_RS12135 are separated by 148 nucleotides ABZR87_RS12120: ABZR87_RS12120 - isocitrate lyase/phosphoenolpyruvate mutase family protein, at 2,571,484 to 2,572,311 _RS12120 ABZR87_RS12125: ABZR87_RS12125 - DsbA family protein, at 2,572,335 to 2,572,505 _RS12125 ABZR87_RS12130: ABZR87_RS12130 - LysR substrate-binding domain-containing protein, at 2,572,515 to 2,573,432 _RS12130 ABZR87_RS12135: ABZR87_RS12135 - MFS transporter, at 2,573,581 to 2,574,798 _RS12135 Position (kb) 2572 2573 2574Strain fitness (log2 ratio) -2 -1 0 1 2at 2571.938 kb on + strand, within ABZR87_RS12120at 2572.137 kb on - strand, within ABZR87_RS12120at 2572.606 kb on + strandat 2572.606 kb on + strandat 2572.606 kb on + strandat 2572.607 kb on - strand, within ABZR87_RS12130at 2572.607 kb on - strand, within ABZR87_RS12130at 2572.985 kb on - strand, within ABZR87_RS12130at 2573.496 kb on + strandat 2573.840 kb on - strand, within ABZR87_RS12135at 2573.950 kb on + strand, within ABZR87_RS12135at 2573.950 kb on + strand, within ABZR87_RS12135at 2573.951 kb on - strand, within ABZR87_RS12135at 2573.951 kb on - strand, within ABZR87_RS12135at 2573.951 kb on - strand, within ABZR87_RS12135at 2573.951 kb on - strand, within ABZR87_RS12135at 2574.302 kb on - strand, within ABZR87_RS12135at 2574.382 kb on + strand, within ABZR87_RS12135at 2574.382 kb on + strand, within ABZR87_RS12135at 2574.382 kb on + strand, within ABZR87_RS12135at 2574.383 kb on - strand, within ABZR87_RS12135at 2574.383 kb on - strand, within ABZR87_RS12135at 2574.383 kb on - strand, within ABZR87_RS12135at 2574.383 kb on - strand, within ABZR87_RS12135at 2574.421 kb on + strand, within ABZR87_RS12135at 2574.421 kb on + strand, within ABZR87_RS12135at 2574.421 kb on + strand, within ABZR87_RS12135at 2574.421 kb on + strand, within ABZR87_RS12135at 2574.421 kb on + strand, within ABZR87_RS12135at 2574.422 kb on - strand, within ABZR87_RS12135at 2574.422 kb on - strand, within ABZR87_RS12135at 2574.422 kb on - strand, within ABZR87_RS12135at 2574.422 kb on - strand, within ABZR87_RS12135

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 5; outgrowth in LB
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2,571,938 + ABZR87_RS12120 0.55 +0.6
2,572,137 - ABZR87_RS12120 0.79 -1.0
2,572,606 + -1.1
2,572,606 + -0.5
2,572,606 + +1.3
2,572,607 - ABZR87_RS12130 0.10 +1.4
2,572,607 - ABZR87_RS12130 0.10 -0.9
2,572,985 - ABZR87_RS12130 0.51 +1.8
2,573,496 + -0.0
2,573,840 - ABZR87_RS12135 0.21 -0.3
2,573,950 + ABZR87_RS12135 0.30 +1.5
2,573,950 + ABZR87_RS12135 0.30 +0.1
2,573,951 - ABZR87_RS12135 0.30 -2.6
2,573,951 - ABZR87_RS12135 0.30 -0.1
2,573,951 - ABZR87_RS12135 0.30 +0.8
2,573,951 - ABZR87_RS12135 0.30 -0.5
2,574,302 - ABZR87_RS12135 0.59 -0.9
2,574,382 + ABZR87_RS12135 0.66 -0.4
2,574,382 + ABZR87_RS12135 0.66 -0.2
2,574,382 + ABZR87_RS12135 0.66 +0.0
2,574,383 - ABZR87_RS12135 0.66 -0.0
2,574,383 - ABZR87_RS12135 0.66 +0.0
2,574,383 - ABZR87_RS12135 0.66 -0.7
2,574,383 - ABZR87_RS12135 0.66 -0.1
2,574,421 + ABZR87_RS12135 0.69 -1.4
2,574,421 + ABZR87_RS12135 0.69 +0.2
2,574,421 + ABZR87_RS12135 0.69 +0.3
2,574,421 + ABZR87_RS12135 0.69 +0.2
2,574,421 + ABZR87_RS12135 0.69 +0.5
2,574,422 - ABZR87_RS12135 0.69 +0.5
2,574,422 - ABZR87_RS12135 0.69 +0.3
2,574,422 - ABZR87_RS12135 0.69 +0.2
2,574,422 - ABZR87_RS12135 0.69 -0.5

Or see this region's nucleotide sequence