Experiment: soil sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS11845 and ABZR87_RS11850 are separated by 3 nucleotides ABZR87_RS11850 and ABZR87_RS11855 are separated by 11 nucleotides ABZR87_RS11855 and ABZR87_RS11860 are separated by 86 nucleotides
ABZR87_RS11845: ABZR87_RS11845 - polyprenyl diphosphate synthase, at 2,515,632 to 2,516,408
_RS11845
ABZR87_RS11850: ABZR87_RS11850 - phosphatidate cytidylyltransferase, at 2,516,412 to 2,517,230
_RS11850
ABZR87_RS11855: ABZR87_RS11855 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 2,517,242 to 2,518,432
_RS11855
ABZR87_RS11860: ABZR87_RS11860 - RIP metalloprotease RseP, at 2,518,519 to 2,519,907
_RS11860
Position (kb)
2517
2518
2519 Strain fitness (log2 ratio)
-1
0
1
2 at 2518.396 kb on + strand at 2518.396 kb on + strand at 2518.407 kb on + strand at 2518.407 kb on + strand at 2518.407 kb on + strand at 2518.408 kb on - strand at 2518.457 kb on + strand at 2518.462 kb on + strand at 2518.462 kb on + strand at 2518.462 kb on + strand at 2518.463 kb on - strand at 2518.533 kb on - strand at 2518.533 kb on - strand at 2518.556 kb on + strand at 2518.556 kb on + strand at 2518.557 kb on - strand at 2518.585 kb on + strand at 2518.585 kb on + strand at 2518.585 kb on + strand at 2518.585 kb on + strand at 2518.586 kb on - strand at 2518.586 kb on - strand at 2518.662 kb on - strand, within ABZR87_RS11860 at 2518.662 kb on - strand, within ABZR87_RS11860 at 2518.718 kb on - strand, within ABZR87_RS11860 at 2518.813 kb on + strand, within ABZR87_RS11860 at 2518.813 kb on + strand, within ABZR87_RS11860 at 2518.814 kb on - strand, within ABZR87_RS11860 at 2518.814 kb on - strand, within ABZR87_RS11860 at 2518.877 kb on - strand, within ABZR87_RS11860 at 2519.053 kb on + strand, within ABZR87_RS11860 at 2519.118 kb on + strand, within ABZR87_RS11860 at 2519.154 kb on + strand, within ABZR87_RS11860 at 2519.385 kb on + strand, within ABZR87_RS11860 at 2519.385 kb on + strand, within ABZR87_RS11860 at 2519.386 kb on - strand, within ABZR87_RS11860 at 2519.386 kb on - strand, within ABZR87_RS11860
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 5; outgrowth in LB remove 2,518,396 + -0.1 2,518,396 + +0.6 2,518,407 + -0.9 2,518,407 + -0.1 2,518,407 + +0.6 2,518,408 - +2.3 2,518,457 + -0.3 2,518,462 + -1.5 2,518,462 + -1.0 2,518,462 + -0.5 2,518,463 - -0.2 2,518,533 - +0.0 2,518,533 - +0.1 2,518,556 + +0.6 2,518,556 + +1.5 2,518,557 - +0.5 2,518,585 + +1.4 2,518,585 + -0.2 2,518,585 + +0.8 2,518,585 + -0.1 2,518,586 - +0.3 2,518,586 - +0.0 2,518,662 - ABZR87_RS11860 0.10 +0.2 2,518,662 - ABZR87_RS11860 0.10 +0.3 2,518,718 - ABZR87_RS11860 0.14 +0.6 2,518,813 + ABZR87_RS11860 0.21 +1.4 2,518,813 + ABZR87_RS11860 0.21 +1.1 2,518,814 - ABZR87_RS11860 0.21 +0.6 2,518,814 - ABZR87_RS11860 0.21 +0.1 2,518,877 - ABZR87_RS11860 0.26 +0.8 2,519,053 + ABZR87_RS11860 0.38 +0.7 2,519,118 + ABZR87_RS11860 0.43 -0.1 2,519,154 + ABZR87_RS11860 0.46 +0.1 2,519,385 + ABZR87_RS11860 0.62 -0.6 2,519,385 + ABZR87_RS11860 0.62 +0.4 2,519,386 - ABZR87_RS11860 0.62 +0.7 2,519,386 - ABZR87_RS11860 0.62 +1.0
Or see this region's nucleotide sequence