Experiment: soil sample 5; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03250 and ABZR87_RS03255 are separated by 381 nucleotides ABZR87_RS03255 and ABZR87_RS03260 are separated by 165 nucleotides ABZR87_RS03260 and ABZR87_RS03265 are separated by 325 nucleotides ABZR87_RS03265 and ABZR87_RS03270 are separated by 71 nucleotides
ABZR87_RS03250: ABZR87_RS03250 - c-type cytochrome, at 685,379 to 686,272
_RS03250
ABZR87_RS03255: ABZR87_RS03255 - tRNA-Arg, at 686,654 to 686,729
_RS03255
ABZR87_RS03260: ABZR87_RS03260 - histidinol-phosphate transaminase, at 686,895 to 687,962
_RS03260
ABZR87_RS03265: ABZR87_RS03265 - high-potential iron-sulfur protein, at 688,288 to 688,599
_RS03265
ABZR87_RS03270: ABZR87_RS03270 - two-component system response regulator KdpE, at 688,671 to 689,375
_RS03270
Position (kb) 686
687
688 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 686.011 kb on + strand, within ABZR87_RS03250 at 686.011 kb on + strand, within ABZR87_RS03250 at 686.012 kb on - strand, within ABZR87_RS03250 at 686.012 kb on - strand, within ABZR87_RS03250 at 686.012 kb on - strand, within ABZR87_RS03250 at 686.013 kb on + strand, within ABZR87_RS03250 at 686.013 kb on + strand, within ABZR87_RS03250 at 686.013 kb on + strand, within ABZR87_RS03250 at 686.013 kb on + strand, within ABZR87_RS03250 at 686.013 kb on + strand, within ABZR87_RS03250 at 686.013 kb on + strand, within ABZR87_RS03250 at 686.013 kb on + strand, within ABZR87_RS03250 at 686.013 kb on + strand, within ABZR87_RS03250 at 686.013 kb on + strand, within ABZR87_RS03250 at 686.014 kb on - strand, within ABZR87_RS03250 at 686.014 kb on - strand, within ABZR87_RS03250 at 686.014 kb on - strand, within ABZR87_RS03250 at 686.014 kb on - strand, within ABZR87_RS03250 at 686.014 kb on - strand, within ABZR87_RS03250 at 686.014 kb on - strand, within ABZR87_RS03250 at 686.014 kb on - strand, within ABZR87_RS03250 at 686.014 kb on - strand, within ABZR87_RS03250 at 686.034 kb on + strand, within ABZR87_RS03250 at 686.034 kb on + strand, within ABZR87_RS03250 at 686.034 kb on + strand, within ABZR87_RS03250 at 686.034 kb on + strand, within ABZR87_RS03250 at 686.035 kb on - strand, within ABZR87_RS03250 at 686.035 kb on - strand, within ABZR87_RS03250 at 686.035 kb on - strand, within ABZR87_RS03250 at 686.035 kb on - strand, within ABZR87_RS03250 at 686.154 kb on + strand, within ABZR87_RS03250 at 686.154 kb on + strand, within ABZR87_RS03250 at 686.154 kb on + strand, within ABZR87_RS03250 at 686.154 kb on + strand, within ABZR87_RS03250 at 686.154 kb on + strand, within ABZR87_RS03250 at 686.154 kb on + strand, within ABZR87_RS03250 at 686.154 kb on + strand, within ABZR87_RS03250 at 686.154 kb on + strand, within ABZR87_RS03250 at 686.154 kb on + strand, within ABZR87_RS03250 at 686.154 kb on + strand, within ABZR87_RS03250 at 686.154 kb on + strand, within ABZR87_RS03250 at 686.155 kb on - strand, within ABZR87_RS03250 at 686.155 kb on - strand, within ABZR87_RS03250 at 686.155 kb on - strand, within ABZR87_RS03250 at 686.155 kb on - strand, within ABZR87_RS03250 at 686.155 kb on - strand, within ABZR87_RS03250 at 686.155 kb on - strand, within ABZR87_RS03250 at 686.155 kb on - strand, within ABZR87_RS03250 at 686.452 kb on + strand at 686.453 kb on - strand at 686.463 kb on + strand at 686.463 kb on + strand at 686.463 kb on + strand at 686.463 kb on + strand at 686.463 kb on + strand at 686.463 kb on + strand at 686.464 kb on - strand at 686.464 kb on - strand at 686.464 kb on - strand at 686.464 kb on - strand at 686.464 kb on - strand at 686.466 kb on - strand at 686.466 kb on - strand at 686.505 kb on - strand at 686.505 kb on - strand at 686.755 kb on + strand at 686.756 kb on - strand at 686.904 kb on + strand at 686.905 kb on - strand at 686.917 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.937 kb on + strand at 686.938 kb on - strand at 686.938 kb on - strand at 686.938 kb on - strand at 686.938 kb on - strand at 686.938 kb on - strand at 686.938 kb on - strand at 686.984 kb on + strand at 686.984 kb on + strand at 686.985 kb on - strand at 687.022 kb on + strand, within ABZR87_RS03260 at 687.023 kb on - strand, within ABZR87_RS03260 at 687.234 kb on + strand, within ABZR87_RS03260 at 687.235 kb on - strand, within ABZR87_RS03260 at 687.243 kb on + strand, within ABZR87_RS03260 at 687.243 kb on + strand, within ABZR87_RS03260 at 687.244 kb on - strand, within ABZR87_RS03260 at 687.252 kb on + strand, within ABZR87_RS03260 at 687.252 kb on + strand, within ABZR87_RS03260 at 687.252 kb on + strand, within ABZR87_RS03260 at 687.253 kb on - strand, within ABZR87_RS03260 at 687.253 kb on - strand, within ABZR87_RS03260 at 687.253 kb on - strand, within ABZR87_RS03260 at 687.265 kb on - strand, within ABZR87_RS03260 at 687.324 kb on + strand, within ABZR87_RS03260 at 687.324 kb on + strand, within ABZR87_RS03260 at 687.324 kb on + strand, within ABZR87_RS03260 at 687.324 kb on + strand, within ABZR87_RS03260 at 687.324 kb on + strand, within ABZR87_RS03260 at 687.325 kb on - strand, within ABZR87_RS03260 at 687.325 kb on - strand, within ABZR87_RS03260 at 687.325 kb on - strand, within ABZR87_RS03260 at 687.325 kb on - strand, within ABZR87_RS03260 at 687.325 kb on - strand, within ABZR87_RS03260 at 687.325 kb on - strand, within ABZR87_RS03260 at 687.453 kb on + strand, within ABZR87_RS03260 at 687.453 kb on + strand, within ABZR87_RS03260 at 687.453 kb on + strand, within ABZR87_RS03260 at 687.453 kb on + strand, within ABZR87_RS03260 at 687.453 kb on + strand, within ABZR87_RS03260 at 687.453 kb on + strand, within ABZR87_RS03260 at 687.453 kb on + strand, within ABZR87_RS03260 at 687.453 kb on + strand, within ABZR87_RS03260 at 687.453 kb on + strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.454 kb on - strand, within ABZR87_RS03260 at 687.669 kb on + strand, within ABZR87_RS03260 at 687.669 kb on + strand, within ABZR87_RS03260 at 687.670 kb on - strand, within ABZR87_RS03260 at 687.670 kb on - strand, within ABZR87_RS03260 at 687.684 kb on + strand, within ABZR87_RS03260 at 687.684 kb on + strand, within ABZR87_RS03260 at 687.684 kb on + strand, within ABZR87_RS03260 at 687.685 kb on - strand, within ABZR87_RS03260 at 687.685 kb on - strand, within ABZR87_RS03260 at 687.685 kb on - strand, within ABZR87_RS03260 at 687.685 kb on - strand, within ABZR87_RS03260 at 687.685 kb on - strand, within ABZR87_RS03260 at 687.685 kb on - strand, within ABZR87_RS03260 at 687.685 kb on - strand, within ABZR87_RS03260 at 687.685 kb on - strand, within ABZR87_RS03260 at 687.685 kb on - strand, within ABZR87_RS03260 at 687.934 kb on + strand at 687.935 kb on - strand at 687.935 kb on - strand at 687.935 kb on - strand at 687.960 kb on + strand at 687.961 kb on - strand at 687.961 kb on - strand at 687.961 kb on - strand at 687.964 kb on + strand at 687.964 kb on + strand at 687.964 kb on + strand at 687.964 kb on + strand at 687.964 kb on + strand at 687.965 kb on - strand at 687.965 kb on - strand at 687.965 kb on - strand at 688.108 kb on + strand at 688.108 kb on + strand at 688.109 kb on - strand at 688.109 kb on - strand at 688.122 kb on - strand at 688.122 kb on - strand at 688.139 kb on + strand at 688.139 kb on + strand at 688.139 kb on + strand at 688.139 kb on + strand at 688.219 kb on - strand at 688.420 kb on + strand, within ABZR87_RS03265 at 688.421 kb on - strand, within ABZR87_RS03265 at 688.501 kb on + strand, within ABZR87_RS03265 at 688.501 kb on + strand, within ABZR87_RS03265 at 688.502 kb on - strand, within ABZR87_RS03265 at 688.502 kb on - strand, within ABZR87_RS03265 at 688.502 kb on - strand, within ABZR87_RS03265 at 688.502 kb on - strand, within ABZR87_RS03265 at 688.667 kb on + strand at 688.667 kb on + strand at 688.667 kb on + strand at 688.667 kb on + strand at 688.667 kb on + strand at 688.667 kb on + strand at 688.668 kb on - strand at 688.668 kb on - strand at 688.668 kb on - strand at 688.668 kb on - strand at 688.668 kb on - strand at 688.668 kb on - strand at 688.668 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 5; outgrowth in LB remove 686,011 + ABZR87_RS03250 0.71 -0.2 686,011 + ABZR87_RS03250 0.71 -0.0 686,012 - ABZR87_RS03250 0.71 -0.5 686,012 - ABZR87_RS03250 0.71 -0.6 686,012 - ABZR87_RS03250 0.71 +0.4 686,013 + ABZR87_RS03250 0.71 +0.2 686,013 + ABZR87_RS03250 0.71 -0.0 686,013 + ABZR87_RS03250 0.71 -0.4 686,013 + ABZR87_RS03250 0.71 +0.3 686,013 + ABZR87_RS03250 0.71 -0.6 686,013 + ABZR87_RS03250 0.71 +0.1 686,013 + ABZR87_RS03250 0.71 +0.1 686,013 + ABZR87_RS03250 0.71 -0.6 686,013 + ABZR87_RS03250 0.71 +0.2 686,014 - ABZR87_RS03250 0.71 -1.0 686,014 - ABZR87_RS03250 0.71 -0.2 686,014 - ABZR87_RS03250 0.71 -0.3 686,014 - ABZR87_RS03250 0.71 -1.0 686,014 - ABZR87_RS03250 0.71 -0.6 686,014 - ABZR87_RS03250 0.71 +0.2 686,014 - ABZR87_RS03250 0.71 -0.3 686,014 - ABZR87_RS03250 0.71 +0.2 686,034 + ABZR87_RS03250 0.73 +0.4 686,034 + ABZR87_RS03250 0.73 -1.1 686,034 + ABZR87_RS03250 0.73 -0.8 686,034 + ABZR87_RS03250 0.73 -0.3 686,035 - ABZR87_RS03250 0.73 -0.1 686,035 - ABZR87_RS03250 0.73 -0.2 686,035 - ABZR87_RS03250 0.73 +0.3 686,035 - ABZR87_RS03250 0.73 +0.9 686,154 + ABZR87_RS03250 0.87 +0.6 686,154 + ABZR87_RS03250 0.87 -0.5 686,154 + ABZR87_RS03250 0.87 -0.4 686,154 + ABZR87_RS03250 0.87 -0.5 686,154 + ABZR87_RS03250 0.87 -0.3 686,154 + ABZR87_RS03250 0.87 -1.0 686,154 + ABZR87_RS03250 0.87 +0.5 686,154 + ABZR87_RS03250 0.87 -0.7 686,154 + ABZR87_RS03250 0.87 -0.7 686,154 + ABZR87_RS03250 0.87 +0.1 686,154 + ABZR87_RS03250 0.87 +0.3 686,155 - ABZR87_RS03250 0.87 -0.9 686,155 - ABZR87_RS03250 0.87 -0.4 686,155 - ABZR87_RS03250 0.87 -1.6 686,155 - ABZR87_RS03250 0.87 +0.1 686,155 - ABZR87_RS03250 0.87 +0.5 686,155 - ABZR87_RS03250 0.87 +0.2 686,155 - ABZR87_RS03250 0.87 -0.8 686,452 + +0.3 686,453 - +2.3 686,463 + +0.3 686,463 + +0.4 686,463 + +0.2 686,463 + -1.6 686,463 + +0.1 686,463 + -0.5 686,464 - -0.6 686,464 - +0.7 686,464 - -1.6 686,464 - +1.0 686,464 - +0.8 686,466 - -0.3 686,466 - -2.4 686,505 - -0.9 686,505 - +0.4 686,755 + -0.3 686,756 - -0.9 686,904 + -0.2 686,905 - +0.0 686,917 + -0.2 686,937 + +0.2 686,937 + +0.3 686,937 + +0.3 686,937 + -0.4 686,937 + -0.2 686,937 + +0.3 686,937 + -0.4 686,937 + -0.2 686,937 + -0.3 686,937 + +0.9 686,937 + +1.0 686,937 + +0.6 686,937 + +0.3 686,938 - +0.6 686,938 - -0.2 686,938 - +0.8 686,938 - -0.1 686,938 - -1.7 686,938 - -0.6 686,984 + -0.8 686,984 + +0.5 686,985 - +0.5 687,022 + ABZR87_RS03260 0.12 -0.0 687,023 - ABZR87_RS03260 0.12 +0.5 687,234 + ABZR87_RS03260 0.32 -0.2 687,235 - ABZR87_RS03260 0.32 -0.6 687,243 + ABZR87_RS03260 0.33 +1.0 687,243 + ABZR87_RS03260 0.33 -1.8 687,244 - ABZR87_RS03260 0.33 +0.3 687,252 + ABZR87_RS03260 0.33 -0.2 687,252 + ABZR87_RS03260 0.33 -0.6 687,252 + ABZR87_RS03260 0.33 +0.4 687,253 - ABZR87_RS03260 0.34 +0.0 687,253 - ABZR87_RS03260 0.34 +0.1 687,253 - ABZR87_RS03260 0.34 +0.3 687,265 - ABZR87_RS03260 0.35 +0.5 687,324 + ABZR87_RS03260 0.40 +0.5 687,324 + ABZR87_RS03260 0.40 -0.1 687,324 + ABZR87_RS03260 0.40 -2.2 687,324 + ABZR87_RS03260 0.40 -0.3 687,324 + ABZR87_RS03260 0.40 +0.7 687,325 - ABZR87_RS03260 0.40 -0.6 687,325 - ABZR87_RS03260 0.40 -0.3 687,325 - ABZR87_RS03260 0.40 +0.3 687,325 - ABZR87_RS03260 0.40 -0.2 687,325 - ABZR87_RS03260 0.40 +0.7 687,325 - ABZR87_RS03260 0.40 +0.7 687,453 + ABZR87_RS03260 0.52 -0.2 687,453 + ABZR87_RS03260 0.52 +0.3 687,453 + ABZR87_RS03260 0.52 -0.3 687,453 + ABZR87_RS03260 0.52 +0.5 687,453 + ABZR87_RS03260 0.52 +1.3 687,453 + ABZR87_RS03260 0.52 -0.0 687,453 + ABZR87_RS03260 0.52 +1.4 687,453 + ABZR87_RS03260 0.52 -0.3 687,453 + ABZR87_RS03260 0.52 +0.0 687,454 - ABZR87_RS03260 0.52 -1.3 687,454 - ABZR87_RS03260 0.52 -0.2 687,454 - ABZR87_RS03260 0.52 +0.6 687,454 - ABZR87_RS03260 0.52 -0.7 687,454 - ABZR87_RS03260 0.52 +0.4 687,454 - ABZR87_RS03260 0.52 -0.9 687,454 - ABZR87_RS03260 0.52 +0.3 687,454 - ABZR87_RS03260 0.52 -0.2 687,454 - ABZR87_RS03260 0.52 -0.9 687,454 - ABZR87_RS03260 0.52 +1.3 687,454 - ABZR87_RS03260 0.52 +0.7 687,454 - ABZR87_RS03260 0.52 +0.0 687,669 + ABZR87_RS03260 0.72 +0.8 687,669 + ABZR87_RS03260 0.72 -0.6 687,670 - ABZR87_RS03260 0.73 -0.1 687,670 - ABZR87_RS03260 0.73 -0.0 687,684 + ABZR87_RS03260 0.74 +0.1 687,684 + ABZR87_RS03260 0.74 +0.0 687,684 + ABZR87_RS03260 0.74 -0.4 687,685 - ABZR87_RS03260 0.74 +0.6 687,685 - ABZR87_RS03260 0.74 +0.4 687,685 - ABZR87_RS03260 0.74 -0.8 687,685 - ABZR87_RS03260 0.74 -0.1 687,685 - ABZR87_RS03260 0.74 -0.2 687,685 - ABZR87_RS03260 0.74 -0.2 687,685 - ABZR87_RS03260 0.74 -1.1 687,685 - ABZR87_RS03260 0.74 +0.9 687,685 - ABZR87_RS03260 0.74 +0.8 687,934 + +1.2 687,935 - +0.5 687,935 - +0.6 687,935 - -1.1 687,960 + +0.3 687,961 - +0.1 687,961 - +0.9 687,961 - -0.2 687,964 + -0.5 687,964 + +1.2 687,964 + +0.1 687,964 + +0.4 687,964 + +0.3 687,965 - -0.7 687,965 - -0.8 687,965 - -0.1 688,108 + +0.7 688,108 + +0.4 688,109 - -0.2 688,109 - -0.3 688,122 - +0.6 688,122 - +1.0 688,139 + +1.7 688,139 + +0.1 688,139 + -0.7 688,139 + +1.4 688,219 - -0.3 688,420 + ABZR87_RS03265 0.42 +0.3 688,421 - ABZR87_RS03265 0.43 -0.8 688,501 + ABZR87_RS03265 0.68 +0.1 688,501 + ABZR87_RS03265 0.68 -1.1 688,502 - ABZR87_RS03265 0.69 -0.5 688,502 - ABZR87_RS03265 0.69 +0.3 688,502 - ABZR87_RS03265 0.69 +1.0 688,502 - ABZR87_RS03265 0.69 +0.1 688,667 + -0.6 688,667 + +0.1 688,667 + +0.2 688,667 + -0.5 688,667 + -0.7 688,667 + +0.5 688,668 - -0.1 688,668 - +0.5 688,668 - -2.8 688,668 - +0.6 688,668 - -0.8 688,668 - +0.3 688,668 - +0.5
Or see this region's nucleotide sequence