Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00020

Experiment: soil sample 5; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS00015 and ABZR87_RS00020 are separated by 237 nucleotidesABZR87_RS00020 and ABZR87_RS00025 are separated by 39 nucleotidesABZR87_RS00025 and ABZR87_RS00030 are separated by 39 nucleotides ABZR87_RS00015: ABZR87_RS00015 - autotransporter assembly complex family protein, at 5,079 to 6,866 _RS00015 ABZR87_RS00020: ABZR87_RS00020 - DUF3460 family protein, at 7,104 to 7,292 _RS00020 ABZR87_RS00025: ABZR87_RS00025 - ScpA family protein, at 7,332 to 8,213 _RS00025 ABZR87_RS00030: ABZR87_RS00030 - pantoate--beta-alanine ligase, at 8,253 to 9,104 _RS00030 Position (kb) 7 8Strain fitness (log2 ratio) -2 -1 0 1at 6.107 kb on + strand, within ABZR87_RS00015at 6.107 kb on + strand, within ABZR87_RS00015at 6.108 kb on - strand, within ABZR87_RS00015at 6.142 kb on + strand, within ABZR87_RS00015at 6.142 kb on + strand, within ABZR87_RS00015at 6.142 kb on + strand, within ABZR87_RS00015at 6.143 kb on - strand, within ABZR87_RS00015at 6.143 kb on - strand, within ABZR87_RS00015at 6.143 kb on - strand, within ABZR87_RS00015at 6.232 kb on + strand, within ABZR87_RS00015at 6.233 kb on - strand, within ABZR87_RS00015at 6.233 kb on - strand, within ABZR87_RS00015at 6.250 kb on + strand, within ABZR87_RS00015at 6.250 kb on + strand, within ABZR87_RS00015at 6.251 kb on - strand, within ABZR87_RS00015at 6.251 kb on - strand, within ABZR87_RS00015at 6.322 kb on + strand, within ABZR87_RS00015at 6.322 kb on + strand, within ABZR87_RS00015at 6.323 kb on - strand, within ABZR87_RS00015at 6.325 kb on + strand, within ABZR87_RS00015at 6.464 kb on + strand, within ABZR87_RS00015at 6.494 kb on + strand, within ABZR87_RS00015at 6.494 kb on + strand, within ABZR87_RS00015at 6.577 kb on + strand, within ABZR87_RS00015at 6.577 kb on + strand, within ABZR87_RS00015at 6.578 kb on - strand, within ABZR87_RS00015at 6.578 kb on - strand, within ABZR87_RS00015at 6.631 kb on + strand, within ABZR87_RS00015at 6.631 kb on + strand, within ABZR87_RS00015at 6.631 kb on + strand, within ABZR87_RS00015at 6.631 kb on + strand, within ABZR87_RS00015at 6.631 kb on + strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.632 kb on - strand, within ABZR87_RS00015at 6.670 kb on + strand, within ABZR87_RS00015at 6.740 kb on - strandat 6.740 kb on - strandat 6.811 kb on + strandat 6.812 kb on - strandat 6.918 kb on + strandat 6.918 kb on + strandat 6.918 kb on + strandat 6.918 kb on + strandat 6.919 kb on - strandat 6.919 kb on - strandat 6.928 kb on + strandat 6.929 kb on - strandat 6.929 kb on - strandat 6.965 kb on + strandat 6.965 kb on + strandat 6.966 kb on - strandat 7.031 kb on + strandat 7.036 kb on + strandat 7.036 kb on + strandat 7.037 kb on - strandat 7.097 kb on + strandat 7.113 kb on + strandat 7.113 kb on + strandat 7.113 kb on + strandat 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.278 kb on + strandat 7.278 kb on + strandat 7.278 kb on + strandat 8.199 kb on + strandat 8.211 kb on + strandat 8.211 kb on + strandat 8.211 kb on + strandat 8.243 kb on + strandat 8.243 kb on + strandat 8.252 kb on + strandat 8.252 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 5; outgrowth in LB
remove
6,107 + ABZR87_RS00015 0.57 +0.1
6,107 + ABZR87_RS00015 0.57 +0.2
6,108 - ABZR87_RS00015 0.58 -0.4
6,142 + ABZR87_RS00015 0.59 +0.3
6,142 + ABZR87_RS00015 0.59 +0.0
6,142 + ABZR87_RS00015 0.59 -0.2
6,143 - ABZR87_RS00015 0.60 -0.9
6,143 - ABZR87_RS00015 0.60 +0.5
6,143 - ABZR87_RS00015 0.60 -0.2
6,232 + ABZR87_RS00015 0.64 +0.6
6,233 - ABZR87_RS00015 0.65 -0.2
6,233 - ABZR87_RS00015 0.65 +0.1
6,250 + ABZR87_RS00015 0.65 +0.7
6,250 + ABZR87_RS00015 0.65 +0.2
6,251 - ABZR87_RS00015 0.66 +0.3
6,251 - ABZR87_RS00015 0.66 -0.0
6,322 + ABZR87_RS00015 0.70 +0.0
6,322 + ABZR87_RS00015 0.70 -1.7
6,323 - ABZR87_RS00015 0.70 -1.1
6,325 + ABZR87_RS00015 0.70 +0.7
6,464 + ABZR87_RS00015 0.77 -0.2
6,494 + ABZR87_RS00015 0.79 -0.8
6,494 + ABZR87_RS00015 0.79 -0.4
6,577 + ABZR87_RS00015 0.84 +0.5
6,577 + ABZR87_RS00015 0.84 +0.5
6,578 - ABZR87_RS00015 0.84 -0.0
6,578 - ABZR87_RS00015 0.84 -1.5
6,631 + ABZR87_RS00015 0.87 +0.3
6,631 + ABZR87_RS00015 0.87 +0.8
6,631 + ABZR87_RS00015 0.87 -0.3
6,631 + ABZR87_RS00015 0.87 +0.4
6,631 + ABZR87_RS00015 0.87 +0.3
6,632 - ABZR87_RS00015 0.87 -0.4
6,632 - ABZR87_RS00015 0.87 +0.3
6,632 - ABZR87_RS00015 0.87 -0.5
6,632 - ABZR87_RS00015 0.87 -0.0
6,632 - ABZR87_RS00015 0.87 +0.5
6,632 - ABZR87_RS00015 0.87 -0.5
6,632 - ABZR87_RS00015 0.87 -0.3
6,670 + ABZR87_RS00015 0.89 +0.2
6,740 - +0.2
6,740 - +0.8
6,811 + -0.5
6,812 - +1.1
6,918 + +0.8
6,918 + +1.2
6,918 + +0.6
6,918 + -0.2
6,919 - -0.4
6,919 - -1.1
6,928 + +0.4
6,929 - +0.6
6,929 - -0.9
6,965 + +0.4
6,965 + -0.1
6,966 - +0.8
7,031 + +0.5
7,036 + -0.4
7,036 + +0.4
7,037 - -0.6
7,097 + -0.1
7,113 + -0.1
7,113 + -2.1
7,113 + -1.6
7,272 + ABZR87_RS00020 0.89 -0.2
7,272 + ABZR87_RS00020 0.89 -1.5
7,272 + ABZR87_RS00020 0.89 -1.4
7,272 + ABZR87_RS00020 0.89 +0.7
7,272 + ABZR87_RS00020 0.89 -1.2
7,278 + +0.6
7,278 + +0.9
7,278 + -1.5
8,199 + +0.3
8,211 + -0.5
8,211 + -0.3
8,211 + -0.2
8,243 + +0.4
8,243 + +0.1
8,252 + +0.0
8,252 + +0.3

Or see this region's nucleotide sequence