Experiment: (+)-Arabinogalactan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0448 and BT0449 are separated by 135 nucleotides BT0449 and BT0450 are separated by 88 nucleotides
BT0448: BT0448 - conserved hypothetical protein (NCBI ptt file), at 545,867 to 547,300
BT0448
BT0449: BT0449 - conserved hypothetical protein, putative S-layer related protein precursor (NCBI ptt file), at 547,436 to 548,797
BT0449
BT0450: BT0450 - conserved hypothetical protein (NCBI ptt file), at 548,886 to 550,583
BT0450
Position (kb) 547
548
549 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 546.531 kb on + strand, within BT0448 at 546.576 kb on + strand, within BT0448 at 546.623 kb on + strand, within BT0448 at 546.796 kb on - strand, within BT0448 at 547.002 kb on + strand, within BT0448 at 547.178 kb on + strand at 547.345 kb on + strand at 547.371 kb on + strand at 547.377 kb on + strand at 547.383 kb on + strand at 547.497 kb on + strand at 547.497 kb on + strand at 547.737 kb on - strand, within BT0449 at 547.777 kb on + strand, within BT0449 at 547.780 kb on - strand, within BT0449 at 547.798 kb on + strand, within BT0449 at 547.877 kb on + strand, within BT0449 at 548.164 kb on - strand, within BT0449 at 548.183 kb on + strand, within BT0449 at 548.272 kb on + strand, within BT0449 at 548.340 kb on - strand, within BT0449 at 548.361 kb on + strand, within BT0449 at 548.362 kb on - strand, within BT0449 at 548.369 kb on + strand, within BT0449 at 548.369 kb on + strand, within BT0449 at 548.481 kb on - strand, within BT0449 at 548.484 kb on + strand, within BT0449 at 548.525 kb on + strand, within BT0449 at 548.525 kb on + strand, within BT0449 at 548.582 kb on - strand, within BT0449 at 548.587 kb on + strand, within BT0449 at 548.626 kb on + strand at 548.626 kb on + strand, within BT0449 at 548.635 kb on + strand, within BT0449 at 548.635 kb on + strand, within BT0449 at 548.843 kb on - strand at 548.864 kb on + strand at 548.927 kb on + strand at 548.988 kb on + strand at 549.110 kb on + strand, within BT0450 at 549.111 kb on - strand, within BT0450 at 549.152 kb on + strand, within BT0450 at 549.157 kb on - strand, within BT0450 at 549.163 kb on - strand at 549.264 kb on - strand, within BT0450 at 549.267 kb on - strand, within BT0450 at 549.403 kb on - strand, within BT0450 at 549.424 kb on - strand, within BT0450 at 549.455 kb on + strand, within BT0450 at 549.458 kb on + strand, within BT0450 at 549.458 kb on + strand, within BT0450 at 549.488 kb on + strand, within BT0450 at 549.489 kb on - strand, within BT0450 at 549.510 kb on - strand, within BT0450 at 549.531 kb on + strand, within BT0450 at 549.581 kb on - strand, within BT0450 at 549.614 kb on - strand, within BT0450 at 549.706 kb on - strand, within BT0450 at 549.752 kb on + strand, within BT0450 at 549.753 kb on - strand, within BT0450 at 549.753 kb on - strand, within BT0450 at 549.771 kb on - strand, within BT0450
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan (C) remove 546,531 + BT0448 0.46 +0.3 546,576 + BT0448 0.49 -0.9 546,623 + BT0448 0.53 -2.0 546,796 - BT0448 0.65 -1.6 547,002 + BT0448 0.79 +0.6 547,178 + -0.8 547,345 + -0.9 547,371 + -1.6 547,377 + +0.6 547,383 + -0.4 547,497 + +0.3 547,497 + -1.3 547,737 - BT0449 0.22 -0.4 547,777 + BT0449 0.25 -1.7 547,780 - BT0449 0.25 -0.2 547,798 + BT0449 0.27 +0.6 547,877 + BT0449 0.32 -0.7 548,164 - BT0449 0.53 -0.0 548,183 + BT0449 0.55 +0.6 548,272 + BT0449 0.61 -0.2 548,340 - BT0449 0.66 +0.6 548,361 + BT0449 0.68 +0.2 548,362 - BT0449 0.68 +0.5 548,369 + BT0449 0.69 -1.6 548,369 + BT0449 0.69 -1.7 548,481 - BT0449 0.77 +0.8 548,484 + BT0449 0.77 -1.6 548,525 + BT0449 0.80 +0.0 548,525 + BT0449 0.80 +0.3 548,582 - BT0449 0.84 -1.2 548,587 + BT0449 0.85 +0.8 548,626 + +1.6 548,626 + BT0449 0.87 -0.7 548,635 + BT0449 0.88 -0.3 548,635 + BT0449 0.88 -0.9 548,843 - -1.3 548,864 + +2.2 548,927 + +0.0 548,988 + +2.5 549,110 + BT0450 0.13 -0.6 549,111 - BT0450 0.13 -1.2 549,152 + BT0450 0.16 -1.2 549,157 - BT0450 0.16 +0.6 549,163 - +1.6 549,264 - BT0450 0.22 -0.7 549,267 - BT0450 0.22 +0.0 549,403 - BT0450 0.30 -0.9 549,424 - BT0450 0.32 +0.0 549,455 + BT0450 0.34 -0.4 549,458 + BT0450 0.34 +0.4 549,458 + BT0450 0.34 -0.8 549,488 + BT0450 0.35 +1.6 549,489 - BT0450 0.36 +1.0 549,510 - BT0450 0.37 -0.3 549,531 + BT0450 0.38 -0.4 549,581 - BT0450 0.41 -1.7 549,614 - BT0450 0.43 -3.3 549,706 - BT0450 0.48 -0.3 549,752 + BT0450 0.51 +0.0 549,753 - BT0450 0.51 +1.2 549,753 - BT0450 0.51 -2.6 549,771 - BT0450 0.52 -0.8
Or see this region's nucleotide sequence