Experiment: Cisplatin 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mviN and Synpcc7942_2042 are separated by 6 nucleotides Synpcc7942_2042 and speH are separated by 116 nucleotides speH and Synpcc7942_2044 are separated by 304 nucleotides
Synpcc7942_2041: mviN - integral membrane protein MviN, at 2,110,181 to 2,111,803
mviN
Synpcc7942_2042: Synpcc7942_2042 - hypothetical protein, at 2,111,810 to 2,112,136
_2042
Synpcc7942_2043: speH - S-adenosylmethionine decarboxylase proenzyme, at 2,112,253 to 2,112,672
speH
Synpcc7942_2044: Synpcc7942_2044 - hypothetical protein, at 2,112,977 to 2,113,990
_2044
Position (kb)
2112
2113 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2111.797 kb on + strand at 2111.797 kb on + strand at 2111.797 kb on + strand at 2111.797 kb on + strand at 2111.802 kb on + strand at 2111.805 kb on - strand at 2111.805 kb on - strand at 2111.805 kb on - strand at 2111.805 kb on - strand at 2111.805 kb on - strand at 2111.805 kb on - strand at 2111.805 kb on - strand at 2111.805 kb on - strand at 2111.805 kb on - strand at 2111.807 kb on + strand at 2111.810 kb on - strand at 2111.820 kb on + strand at 2111.828 kb on - strand at 2111.830 kb on + strand at 2111.835 kb on - strand at 2111.888 kb on - strand, within Synpcc7942_2042 at 2111.931 kb on - strand, within Synpcc7942_2042 at 2111.947 kb on + strand, within Synpcc7942_2042 at 2111.947 kb on + strand, within Synpcc7942_2042 at 2112.005 kb on + strand, within Synpcc7942_2042 at 2112.014 kb on + strand, within Synpcc7942_2042 at 2112.017 kb on + strand, within Synpcc7942_2042 at 2112.024 kb on + strand, within Synpcc7942_2042 at 2112.024 kb on + strand, within Synpcc7942_2042 at 2112.024 kb on + strand, within Synpcc7942_2042 at 2112.030 kb on + strand, within Synpcc7942_2042 at 2112.030 kb on + strand, within Synpcc7942_2042 at 2112.030 kb on + strand, within Synpcc7942_2042 at 2112.030 kb on + strand, within Synpcc7942_2042 at 2112.030 kb on + strand, within Synpcc7942_2042 at 2112.031 kb on - strand, within Synpcc7942_2042 at 2112.032 kb on - strand, within Synpcc7942_2042 at 2112.032 kb on - strand, within Synpcc7942_2042 at 2112.038 kb on - strand, within Synpcc7942_2042 at 2112.038 kb on - strand, within Synpcc7942_2042 at 2112.038 kb on - strand, within Synpcc7942_2042 at 2112.038 kb on - strand, within Synpcc7942_2042 at 2112.038 kb on - strand at 2112.038 kb on - strand, within Synpcc7942_2042 at 2112.050 kb on - strand, within Synpcc7942_2042 at 2112.050 kb on - strand, within Synpcc7942_2042 at 2112.060 kb on + strand, within Synpcc7942_2042 at 2112.068 kb on - strand, within Synpcc7942_2042 at 2112.140 kb on + strand at 2112.148 kb on + strand at 2112.192 kb on - strand at 2112.214 kb on - strand at 2112.256 kb on + strand at 2112.295 kb on - strand, within speH at 2112.308 kb on - strand, within speH at 2112.322 kb on + strand, within speH at 2112.338 kb on - strand, within speH at 2112.388 kb on + strand, within speH at 2112.388 kb on + strand, within speH at 2112.388 kb on + strand, within speH at 2112.396 kb on - strand, within speH at 2112.396 kb on - strand, within speH at 2112.460 kb on + strand, within speH at 2112.460 kb on + strand, within speH at 2112.460 kb on + strand, within speH at 2112.468 kb on - strand, within speH at 2112.468 kb on - strand, within speH at 2112.490 kb on - strand, within speH at 2112.561 kb on + strand, within speH at 2112.564 kb on - strand, within speH at 2112.574 kb on - strand, within speH at 2112.577 kb on - strand, within speH at 2112.579 kb on - strand, within speH at 2112.579 kb on - strand at 2112.613 kb on + strand, within speH at 2112.618 kb on + strand, within speH at 2112.626 kb on - strand, within speH at 2112.626 kb on - strand, within speH at 2112.653 kb on + strand at 2112.767 kb on + strand at 2112.770 kb on - strand at 2112.770 kb on - strand at 2112.786 kb on - strand at 2112.833 kb on + strand at 2112.841 kb on - strand at 2112.880 kb on - strand at 2112.942 kb on - strand at 2112.965 kb on + strand at 2112.965 kb on + strand at 2112.965 kb on + strand at 2112.973 kb on - strand at 2112.973 kb on - strand at 2112.973 kb on - strand at 2112.983 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.00625 mg/ml remove 2,111,797 + +4.5 2,111,797 + +1.3 2,111,797 + +1.9 2,111,797 + -1.1 2,111,802 + -2.1 2,111,805 - +2.5 2,111,805 - +1.5 2,111,805 - -2.1 2,111,805 - +2.0 2,111,805 - -3.1 2,111,805 - +1.1 2,111,805 - +1.6 2,111,805 - +4.5 2,111,805 - +3.2 2,111,807 + +0.8 2,111,810 - -2.4 2,111,820 + -1.7 2,111,828 - +3.8 2,111,830 + +0.6 2,111,835 - +1.2 2,111,888 - Synpcc7942_2042 0.24 +3.9 2,111,931 - Synpcc7942_2042 0.37 +2.2 2,111,947 + Synpcc7942_2042 0.42 -1.1 2,111,947 + Synpcc7942_2042 0.42 +2.7 2,112,005 + Synpcc7942_2042 0.60 -3.7 2,112,014 + Synpcc7942_2042 0.62 +0.0 2,112,017 + Synpcc7942_2042 0.63 -1.1 2,112,024 + Synpcc7942_2042 0.65 +2.3 2,112,024 + Synpcc7942_2042 0.65 -1.3 2,112,024 + Synpcc7942_2042 0.65 -1.7 2,112,030 + Synpcc7942_2042 0.67 +2.0 2,112,030 + Synpcc7942_2042 0.67 +2.1 2,112,030 + Synpcc7942_2042 0.67 -1.7 2,112,030 + Synpcc7942_2042 0.67 -1.7 2,112,030 + Synpcc7942_2042 0.67 -2.7 2,112,031 - Synpcc7942_2042 0.68 +3.4 2,112,032 - Synpcc7942_2042 0.68 +1.5 2,112,032 - Synpcc7942_2042 0.68 +3.7 2,112,038 - Synpcc7942_2042 0.70 -3.1 2,112,038 - Synpcc7942_2042 0.70 +1.0 2,112,038 - Synpcc7942_2042 0.70 +1.8 2,112,038 - Synpcc7942_2042 0.70 -2.4 2,112,038 - -0.1 2,112,038 - Synpcc7942_2042 0.70 -0.3 2,112,050 - Synpcc7942_2042 0.73 -2.4 2,112,050 - Synpcc7942_2042 0.73 -2.9 2,112,060 + Synpcc7942_2042 0.76 +1.8 2,112,068 - Synpcc7942_2042 0.79 +0.6 2,112,140 + -0.1 2,112,148 + -1.1 2,112,192 - +2.5 2,112,214 - +3.1 2,112,256 + +0.3 2,112,295 - speH Synpcc7942_2043 0.10 +3.9 2,112,308 - speH Synpcc7942_2043 0.13 +4.0 2,112,322 + speH Synpcc7942_2043 0.16 -2.4 2,112,338 - speH Synpcc7942_2043 0.20 +4.7 2,112,388 + speH Synpcc7942_2043 0.32 +3.5 2,112,388 + speH Synpcc7942_2043 0.32 -1.1 2,112,388 + speH Synpcc7942_2043 0.32 +3.1 2,112,396 - speH Synpcc7942_2043 0.34 -0.1 2,112,396 - speH Synpcc7942_2043 0.34 -1.1 2,112,460 + speH Synpcc7942_2043 0.49 +4.2 2,112,460 + speH Synpcc7942_2043 0.49 -0.1 2,112,460 + speH Synpcc7942_2043 0.49 +2.3 2,112,468 - speH Synpcc7942_2043 0.51 +3.5 2,112,468 - speH Synpcc7942_2043 0.51 +0.3 2,112,490 - speH Synpcc7942_2043 0.56 +1.7 2,112,561 + speH Synpcc7942_2043 0.73 +2.6 2,112,564 - speH Synpcc7942_2043 0.74 -0.1 2,112,574 - speH Synpcc7942_2043 0.76 -0.1 2,112,577 - speH Synpcc7942_2043 0.77 +2.6 2,112,579 - speH Synpcc7942_2043 0.78 +3.0 2,112,579 - +1.5 2,112,613 + speH Synpcc7942_2043 0.86 +1.7 2,112,618 + speH Synpcc7942_2043 0.87 -0.1 2,112,626 - speH Synpcc7942_2043 0.89 -0.1 2,112,626 - speH Synpcc7942_2043 0.89 -1.7 2,112,653 + +3.5 2,112,767 + -1.7 2,112,770 - -2.4 2,112,770 - +2.3 2,112,786 - -2.1 2,112,833 + +1.7 2,112,841 - -0.1 2,112,880 - +0.2 2,112,942 - +4.2 2,112,965 + +2.1 2,112,965 + +0.5 2,112,965 + +4.0 2,112,973 - -0.1 2,112,973 - +1.4 2,112,973 - +1.2 2,112,983 - +1.9
Or see this region's nucleotide sequence