Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0664

Experiment: Cisplatin 0.00625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcya2 and Synpcc7942_0664 overlap by 1 nucleotidesSynpcc7942_0664 and Synpcc7942_0665 are separated by 7 nucleotidesSynpcc7942_0665 and Synpcc7942_0666 are separated by 162 nucleotides Synpcc7942_0663: cya2 - putative adenylate/guanylate cyclase, at 658,977 to 660,875 cya2 Synpcc7942_0664: Synpcc7942_0664 - Cyclic nucleotide-binding, at 660,875 to 662,224 _0664 Synpcc7942_0665: Synpcc7942_0665 - hypothetical protein, at 662,232 to 662,978 _0665 Synpcc7942_0666: Synpcc7942_0666 - Heat shock protein DnaJ-like, at 663,141 to 663,761 _0666 Position (kb) 660 661 662 663Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 659.878 kb on - strand, within cya2at 659.884 kb on + strand, within cya2at 659.891 kb on + strand, within cya2at 659.991 kb on + strand, within cya2at 659.991 kb on + strand, within cya2at 659.994 kb on - strand, within cya2at 659.999 kb on - strand, within cya2at 660.004 kb on - strand, within cya2at 660.009 kb on - strand, within cya2at 660.022 kb on + strand, within cya2at 660.030 kb on - strand, within cya2at 660.030 kb on - strand, within cya2at 660.033 kb on + strand, within cya2at 660.039 kb on + strand, within cya2at 660.039 kb on + strand, within cya2at 660.045 kb on + strand, within cya2at 660.047 kb on - strand, within cya2at 660.053 kb on - strand, within cya2at 660.068 kb on - strand, within cya2at 660.070 kb on - strand, within cya2at 660.077 kb on - strand, within cya2at 660.083 kb on + strand, within cya2at 660.125 kb on - strand, within cya2at 660.145 kb on + strand, within cya2at 660.152 kb on + strand, within cya2at 660.152 kb on + strand, within cya2at 660.153 kb on - strand, within cya2at 660.153 kb on - strand, within cya2at 660.165 kb on - strand, within cya2at 660.204 kb on + strandat 660.204 kb on + strand, within cya2at 660.204 kb on + strand, within cya2at 660.212 kb on - strand, within cya2at 660.243 kb on + strand, within cya2at 660.248 kb on + strand, within cya2at 660.250 kb on + strand, within cya2at 660.250 kb on + strand, within cya2at 660.251 kb on - strand, within cya2at 660.256 kb on - strand, within cya2at 660.268 kb on + strand, within cya2at 660.273 kb on + strand, within cya2at 660.273 kb on + strand, within cya2at 660.273 kb on - strand, within cya2at 660.281 kb on - strand, within cya2at 660.422 kb on - strand, within cya2at 660.447 kb on + strand, within cya2at 660.459 kb on - strand, within cya2at 660.482 kb on - strand, within cya2at 660.502 kb on + strand, within cya2at 660.503 kb on + strand, within cya2at 660.555 kb on + strand, within cya2at 660.563 kb on - strand, within cya2at 660.563 kb on - strand, within cya2at 660.567 kb on + strand, within cya2at 660.567 kb on + strandat 660.597 kb on + strand, within cya2at 660.644 kb on - strand, within cya2at 660.693 kb on + strandat 660.702 kb on - strandat 660.718 kb on - strandat 660.779 kb on + strandat 660.789 kb on + strandat 660.789 kb on + strandat 660.797 kb on - strandat 660.815 kb on - strandat 660.849 kb on - strandat 660.867 kb on - strandat 660.873 kb on + strandat 660.914 kb on + strandat 660.914 kb on + strandat 660.922 kb on - strandat 660.922 kb on - strandat 660.922 kb on - strandat 660.983 kb on + strandat 660.988 kb on + strandat 661.046 kb on + strand, within Synpcc7942_0664at 661.046 kb on + strand, within Synpcc7942_0664at 661.055 kb on - strand, within Synpcc7942_0664at 661.055 kb on - strand, within Synpcc7942_0664at 661.059 kb on + strand, within Synpcc7942_0664at 661.077 kb on + strand, within Synpcc7942_0664at 661.116 kb on + strand, within Synpcc7942_0664at 661.145 kb on - strand, within Synpcc7942_0664at 661.155 kb on - strand, within Synpcc7942_0664at 661.193 kb on - strand, within Synpcc7942_0664at 661.314 kb on + strand, within Synpcc7942_0664at 661.463 kb on - strand, within Synpcc7942_0664at 661.465 kb on + strand, within Synpcc7942_0664at 661.472 kb on - strand, within Synpcc7942_0664at 661.475 kb on + strand, within Synpcc7942_0664at 661.483 kb on - strand, within Synpcc7942_0664at 661.494 kb on - strand, within Synpcc7942_0664at 661.507 kb on - strand, within Synpcc7942_0664at 661.507 kb on - strand, within Synpcc7942_0664at 661.593 kb on - strand, within Synpcc7942_0664at 661.593 kb on - strand, within Synpcc7942_0664at 661.599 kb on + strand, within Synpcc7942_0664at 661.607 kb on - strand, within Synpcc7942_0664at 661.730 kb on - strand, within Synpcc7942_0664at 661.738 kb on - strand, within Synpcc7942_0664at 661.740 kb on - strand, within Synpcc7942_0664at 661.742 kb on + strand, within Synpcc7942_0664at 661.764 kb on + strand, within Synpcc7942_0664at 661.845 kb on + strand, within Synpcc7942_0664at 661.892 kb on + strand, within Synpcc7942_0664at 661.919 kb on + strand, within Synpcc7942_0664at 661.965 kb on + strand, within Synpcc7942_0664at 661.985 kb on + strand, within Synpcc7942_0664at 661.996 kb on + strand, within Synpcc7942_0664at 662.004 kb on - strand, within Synpcc7942_0664at 662.005 kb on - strand, within Synpcc7942_0664at 662.019 kb on + strand, within Synpcc7942_0664at 662.019 kb on + strand, within Synpcc7942_0664at 662.019 kb on + strand, within Synpcc7942_0664at 662.082 kb on + strand, within Synpcc7942_0664at 662.082 kb on + strand, within Synpcc7942_0664at 662.090 kb on - strandat 662.090 kb on - strandat 662.090 kb on - strandat 662.090 kb on - strandat 662.092 kb on + strandat 662.098 kb on + strandat 662.099 kb on - strandat 662.100 kb on - strandat 662.106 kb on - strandat 662.120 kb on - strandat 662.125 kb on - strandat 662.130 kb on - strandat 662.132 kb on + strandat 662.155 kb on - strandat 662.155 kb on - strandat 662.173 kb on + strandat 662.198 kb on + strandat 662.265 kb on + strandat 662.269 kb on + strandat 662.324 kb on - strand, within Synpcc7942_0665at 662.350 kb on + strand, within Synpcc7942_0665at 662.350 kb on + strandat 662.355 kb on - strand, within Synpcc7942_0665at 662.394 kb on + strand, within Synpcc7942_0665at 662.395 kb on + strand, within Synpcc7942_0665at 662.402 kb on - strand, within Synpcc7942_0665at 662.402 kb on - strand, within Synpcc7942_0665at 662.429 kb on - strand, within Synpcc7942_0665at 662.430 kb on - strand, within Synpcc7942_0665at 662.430 kb on - strand, within Synpcc7942_0665at 662.432 kb on + strand, within Synpcc7942_0665at 662.445 kb on - strand, within Synpcc7942_0665at 662.497 kb on + strand, within Synpcc7942_0665at 662.512 kb on - strand, within Synpcc7942_0665at 662.515 kb on + strand, within Synpcc7942_0665at 662.515 kb on + strand, within Synpcc7942_0665at 662.523 kb on - strand, within Synpcc7942_0665at 662.534 kb on + strand, within Synpcc7942_0665at 662.534 kb on + strand, within Synpcc7942_0665at 662.542 kb on - strand, within Synpcc7942_0665at 662.549 kb on + strand, within Synpcc7942_0665at 662.571 kb on + strand, within Synpcc7942_0665at 662.573 kb on + strand, within Synpcc7942_0665at 662.573 kb on + strand, within Synpcc7942_0665at 662.573 kb on + strand, within Synpcc7942_0665at 662.581 kb on - strand, within Synpcc7942_0665at 662.581 kb on - strand, within Synpcc7942_0665at 662.600 kb on - strand, within Synpcc7942_0665at 662.610 kb on - strand, within Synpcc7942_0665at 662.622 kb on + strand, within Synpcc7942_0665at 662.638 kb on + strandat 662.672 kb on + strandat 662.680 kb on - strand, within Synpcc7942_0665at 662.703 kb on - strand, within Synpcc7942_0665at 662.736 kb on - strand, within Synpcc7942_0665at 662.769 kb on + strand, within Synpcc7942_0665at 662.776 kb on + strand, within Synpcc7942_0665at 662.776 kb on + strand, within Synpcc7942_0665at 662.784 kb on - strand, within Synpcc7942_0665at 662.803 kb on + strand, within Synpcc7942_0665at 662.810 kb on - strand, within Synpcc7942_0665at 662.821 kb on - strand, within Synpcc7942_0665at 662.828 kb on + strand, within Synpcc7942_0665at 662.868 kb on + strand, within Synpcc7942_0665at 662.889 kb on + strand, within Synpcc7942_0665at 662.894 kb on + strand, within Synpcc7942_0665at 662.894 kb on + strand, within Synpcc7942_0665at 662.899 kb on - strand, within Synpcc7942_0665at 662.899 kb on - strand, within Synpcc7942_0665at 662.902 kb on - strand, within Synpcc7942_0665at 662.928 kb on - strandat 662.930 kb on + strandat 662.930 kb on + strandat 662.938 kb on - strandat 662.965 kb on - strandat 662.965 kb on - strandat 662.998 kb on - strandat 663.112 kb on + strandat 663.119 kb on + strandat 663.128 kb on - strandat 663.153 kb on + strandat 663.166 kb on - strandat 663.185 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.00625 mg/ml
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659,878 - cya2 Synpcc7942_0663 0.47 -1.8
659,884 + cya2 Synpcc7942_0663 0.48 -0.2
659,891 + cya2 Synpcc7942_0663 0.48 +3.5
659,991 + cya2 Synpcc7942_0663 0.53 +1.3
659,991 + cya2 Synpcc7942_0663 0.53 +1.3
659,994 - cya2 Synpcc7942_0663 0.54 +1.4
659,999 - cya2 Synpcc7942_0663 0.54 +1.8
660,004 - cya2 Synpcc7942_0663 0.54 -1.2
660,009 - cya2 Synpcc7942_0663 0.54 +2.8
660,022 + cya2 Synpcc7942_0663 0.55 -1.2
660,030 - cya2 Synpcc7942_0663 0.55 -2.2
660,030 - cya2 Synpcc7942_0663 0.55 +1.7
660,033 + cya2 Synpcc7942_0663 0.56 +3.3
660,039 + cya2 Synpcc7942_0663 0.56 +2.8
660,039 + cya2 Synpcc7942_0663 0.56 +2.6
660,045 + cya2 Synpcc7942_0663 0.56 +3.7
660,047 - cya2 Synpcc7942_0663 0.56 +2.3
660,053 - cya2 Synpcc7942_0663 0.57 +2.4
660,068 - cya2 Synpcc7942_0663 0.57 -0.2
660,070 - cya2 Synpcc7942_0663 0.58 +4.1
660,077 - cya2 Synpcc7942_0663 0.58 +0.8
660,083 + cya2 Synpcc7942_0663 0.58 -0.2
660,125 - cya2 Synpcc7942_0663 0.60 +1.3
660,145 + cya2 Synpcc7942_0663 0.62 -0.2
660,152 + cya2 Synpcc7942_0663 0.62 -3.0
660,152 + cya2 Synpcc7942_0663 0.62 -1.8
660,153 - cya2 Synpcc7942_0663 0.62 -1.2
660,153 - cya2 Synpcc7942_0663 0.62 +1.1
660,165 - cya2 Synpcc7942_0663 0.63 -1.2
660,204 + -0.2
660,204 + cya2 Synpcc7942_0663 0.65 +1.0
660,204 + cya2 Synpcc7942_0663 0.65 +1.3
660,212 - cya2 Synpcc7942_0663 0.65 -1.2
660,243 + cya2 Synpcc7942_0663 0.67 +2.4
660,248 + cya2 Synpcc7942_0663 0.67 -1.8
660,250 + cya2 Synpcc7942_0663 0.67 -1.8
660,250 + cya2 Synpcc7942_0663 0.67 +1.8
660,251 - cya2 Synpcc7942_0663 0.67 +0.5
660,256 - cya2 Synpcc7942_0663 0.67 +0.0
660,268 + cya2 Synpcc7942_0663 0.68 -0.2
660,273 + cya2 Synpcc7942_0663 0.68 -0.2
660,273 + cya2 Synpcc7942_0663 0.68 +2.0
660,273 - cya2 Synpcc7942_0663 0.68 +5.4
660,281 - cya2 Synpcc7942_0663 0.69 -2.2
660,422 - cya2 Synpcc7942_0663 0.76 +2.4
660,447 + cya2 Synpcc7942_0663 0.77 -1.2
660,459 - cya2 Synpcc7942_0663 0.78 +0.9
660,482 - cya2 Synpcc7942_0663 0.79 -3.2
660,502 + cya2 Synpcc7942_0663 0.80 +2.9
660,503 + cya2 Synpcc7942_0663 0.80 +3.1
660,555 + cya2 Synpcc7942_0663 0.83 -0.2
660,563 - cya2 Synpcc7942_0663 0.84 +3.0
660,563 - cya2 Synpcc7942_0663 0.84 -0.8
660,567 + cya2 Synpcc7942_0663 0.84 +3.8
660,567 + -0.2
660,597 + cya2 Synpcc7942_0663 0.85 -2.2
660,644 - cya2 Synpcc7942_0663 0.88 +2.6
660,693 + -0.6
660,702 - -1.8
660,718 - +2.2
660,779 + -3.9
660,789 + +3.5
660,789 + +2.6
660,797 - +2.0
660,815 - +1.3
660,849 - +2.5
660,867 - +0.3
660,873 + -1.8
660,914 + -0.5
660,914 + -1.2
660,922 - +0.5
660,922 - +1.2
660,922 - -3.1
660,983 + -0.2
660,988 + -0.2
661,046 + Synpcc7942_0664 0.13 +2.7
661,046 + Synpcc7942_0664 0.13 +1.1
661,055 - Synpcc7942_0664 0.13 +4.4
661,055 - Synpcc7942_0664 0.13 -0.2
661,059 + Synpcc7942_0664 0.14 -2.6
661,077 + Synpcc7942_0664 0.15 +4.1
661,116 + Synpcc7942_0664 0.18 -3.8
661,145 - Synpcc7942_0664 0.20 -0.6
661,155 - Synpcc7942_0664 0.21 -1.2
661,193 - Synpcc7942_0664 0.24 -1.2
661,314 + Synpcc7942_0664 0.33 +2.9
661,463 - Synpcc7942_0664 0.44 +1.3
661,465 + Synpcc7942_0664 0.44 -0.2
661,472 - Synpcc7942_0664 0.44 +2.1
661,475 + Synpcc7942_0664 0.44 -1.8
661,483 - Synpcc7942_0664 0.45 +1.8
661,494 - Synpcc7942_0664 0.46 +2.0
661,507 - Synpcc7942_0664 0.47 +1.8
661,507 - Synpcc7942_0664 0.47 +2.2
661,593 - Synpcc7942_0664 0.53 -0.2
661,593 - Synpcc7942_0664 0.53 +3.3
661,599 + Synpcc7942_0664 0.54 -1.2
661,607 - Synpcc7942_0664 0.54 +1.6
661,730 - Synpcc7942_0664 0.63 +0.9
661,738 - Synpcc7942_0664 0.64 -1.2
661,740 - Synpcc7942_0664 0.64 -1.2
661,742 + Synpcc7942_0664 0.64 +0.3
661,764 + Synpcc7942_0664 0.66 -0.2
661,845 + Synpcc7942_0664 0.72 +0.8
661,892 + Synpcc7942_0664 0.75 -1.8
661,919 + Synpcc7942_0664 0.77 +1.2
661,965 + Synpcc7942_0664 0.81 -2.2
661,985 + Synpcc7942_0664 0.82 +1.3
661,996 + Synpcc7942_0664 0.83 -1.8
662,004 - Synpcc7942_0664 0.84 -0.2
662,005 - Synpcc7942_0664 0.84 -3.1
662,019 + Synpcc7942_0664 0.85 -2.2
662,019 + Synpcc7942_0664 0.85 -3.6
662,019 + Synpcc7942_0664 0.85 +2.6
662,082 + Synpcc7942_0664 0.89 +1.6
662,082 + Synpcc7942_0664 0.89 -1.2
662,090 - -0.2
662,090 - +5.1
662,090 - -1.6
662,090 - -3.8
662,092 + -0.2
662,098 + +1.5
662,099 - -2.6
662,100 - +0.2
662,106 - -1.2
662,120 - -2.2
662,125 - +3.8
662,130 - -2.1
662,132 + -0.2
662,155 - +0.8
662,155 - -3.4
662,173 + +0.7
662,198 + -0.2
662,265 + -0.2
662,269 + -2.6
662,324 - Synpcc7942_0665 0.12 -3.4
662,350 + Synpcc7942_0665 0.16 -0.6
662,350 + -0.2
662,355 - Synpcc7942_0665 0.16 +1.3
662,394 + Synpcc7942_0665 0.22 -0.9
662,395 + Synpcc7942_0665 0.22 +1.5
662,402 - Synpcc7942_0665 0.23 -2.2
662,402 - Synpcc7942_0665 0.23 -0.2
662,429 - Synpcc7942_0665 0.26 -0.2
662,430 - Synpcc7942_0665 0.27 +1.8
662,430 - Synpcc7942_0665 0.27 +1.9
662,432 + Synpcc7942_0665 0.27 +4.1
662,445 - Synpcc7942_0665 0.29 -1.2
662,497 + Synpcc7942_0665 0.35 -1.2
662,512 - Synpcc7942_0665 0.37 +0.0
662,515 + Synpcc7942_0665 0.38 -0.2
662,515 + Synpcc7942_0665 0.38 +1.3
662,523 - Synpcc7942_0665 0.39 -0.2
662,534 + Synpcc7942_0665 0.40 +4.6
662,534 + Synpcc7942_0665 0.40 -0.2
662,542 - Synpcc7942_0665 0.41 +3.0
662,549 + Synpcc7942_0665 0.42 -0.2
662,571 + Synpcc7942_0665 0.45 +1.3
662,573 + Synpcc7942_0665 0.46 -2.8
662,573 + Synpcc7942_0665 0.46 +1.9
662,573 + Synpcc7942_0665 0.46 -1.2
662,581 - Synpcc7942_0665 0.47 -1.2
662,581 - Synpcc7942_0665 0.47 +3.6
662,600 - Synpcc7942_0665 0.49 -0.2
662,610 - Synpcc7942_0665 0.51 -2.2
662,622 + Synpcc7942_0665 0.52 -0.2
662,638 + -0.2
662,672 + +3.5
662,680 - Synpcc7942_0665 0.60 -1.2
662,703 - Synpcc7942_0665 0.63 +1.6
662,736 - Synpcc7942_0665 0.67 +1.4
662,769 + Synpcc7942_0665 0.72 +2.1
662,776 + Synpcc7942_0665 0.73 +2.7
662,776 + Synpcc7942_0665 0.73 -1.8
662,784 - Synpcc7942_0665 0.74 +2.1
662,803 + Synpcc7942_0665 0.76 -1.2
662,810 - Synpcc7942_0665 0.77 -1.8
662,821 - Synpcc7942_0665 0.79 +2.7
662,828 + Synpcc7942_0665 0.80 +2.2
662,868 + Synpcc7942_0665 0.85 +3.0
662,889 + Synpcc7942_0665 0.88 -0.2
662,894 + Synpcc7942_0665 0.89 -1.8
662,894 + Synpcc7942_0665 0.89 +4.2
662,899 - Synpcc7942_0665 0.89 -2.8
662,899 - Synpcc7942_0665 0.89 -0.2
662,902 - Synpcc7942_0665 0.90 +4.3
662,928 - +4.4
662,930 + -1.2
662,930 + +0.3
662,938 - +0.3
662,965 - +1.3
662,965 - -1.2
662,998 - +1.3
663,112 + -0.2
663,119 + -0.2
663,128 - -0.2
663,153 + -0.2
663,166 - +2.0
663,185 + -1.8

Or see this region's nucleotide sequence