Experiment: Cisplatin 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0054 and Synpcc7942_0055 are separated by 32 nucleotides Synpcc7942_0055 and rfbE are separated by 34 nucleotides rfbE and Synpcc7942_0057 are separated by 3 nucleotides
Synpcc7942_0054: Synpcc7942_0054 - hypothetical protein, at 56,423 to 57,190
_0054
Synpcc7942_0055: Synpcc7942_0055 - hypothetical protein, at 57,223 to 57,906
_0055
Synpcc7942_0056: rfbE - perosamine synthetase, at 57,941 to 59,068
rfbE
Synpcc7942_0057: Synpcc7942_0057 - putative C-3 methyl transferase, at 59,072 to 60,304
_0057
Position (kb) 57
58
59
60 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 56.953 kb on + strand, within Synpcc7942_0054 at 56.961 kb on - strand, within Synpcc7942_0054 at 57.014 kb on + strand, within Synpcc7942_0054 at 57.014 kb on - strand, within Synpcc7942_0054 at 57.022 kb on - strand, within Synpcc7942_0054 at 57.147 kb on + strand at 57.278 kb on + strand at 57.329 kb on - strand, within Synpcc7942_0055 at 57.386 kb on + strand, within Synpcc7942_0055 at 57.483 kb on - strand, within Synpcc7942_0055 at 57.528 kb on - strand, within Synpcc7942_0055 at 57.687 kb on - strand, within Synpcc7942_0055 at 58.021 kb on + strand at 58.064 kb on + strand, within rfbE at 58.067 kb on - strand, within rfbE at 58.071 kb on + strand, within rfbE at 58.221 kb on - strand, within rfbE at 58.258 kb on + strand at 58.276 kb on - strand, within rfbE at 58.484 kb on + strand, within rfbE at 58.545 kb on + strand, within rfbE at 58.568 kb on + strand, within rfbE at 58.706 kb on + strand, within rfbE at 58.717 kb on + strand, within rfbE at 58.828 kb on + strand, within rfbE at 58.864 kb on - strand, within rfbE at 58.884 kb on - strand, within rfbE at 59.064 kb on + strand at 59.203 kb on + strand, within Synpcc7942_0057 at 59.203 kb on + strand, within Synpcc7942_0057 at 59.211 kb on - strand, within Synpcc7942_0057 at 59.318 kb on + strand, within Synpcc7942_0057 at 59.319 kb on + strand, within Synpcc7942_0057 at 59.326 kb on - strand, within Synpcc7942_0057 at 59.491 kb on + strand, within Synpcc7942_0057 at 59.503 kb on + strand, within Synpcc7942_0057 at 59.511 kb on - strand, within Synpcc7942_0057 at 59.561 kb on - strand, within Synpcc7942_0057 at 59.571 kb on - strand, within Synpcc7942_0057 at 59.620 kb on + strand, within Synpcc7942_0057 at 59.622 kb on - strand, within Synpcc7942_0057 at 59.628 kb on - strand, within Synpcc7942_0057 at 59.646 kb on - strand, within Synpcc7942_0057 at 59.660 kb on - strand, within Synpcc7942_0057 at 59.677 kb on + strand, within Synpcc7942_0057 at 59.677 kb on + strand, within Synpcc7942_0057 at 59.718 kb on + strand, within Synpcc7942_0057 at 59.719 kb on - strand, within Synpcc7942_0057 at 59.752 kb on + strand, within Synpcc7942_0057 at 59.779 kb on - strand, within Synpcc7942_0057 at 59.843 kb on + strand, within Synpcc7942_0057 at 59.846 kb on - strand, within Synpcc7942_0057 at 59.908 kb on - strand, within Synpcc7942_0057 at 59.920 kb on + strand, within Synpcc7942_0057 at 59.928 kb on - strand, within Synpcc7942_0057 at 59.950 kb on + strand, within Synpcc7942_0057 at 59.956 kb on - strand, within Synpcc7942_0057 at 59.958 kb on - strand, within Synpcc7942_0057 at 59.973 kb on - strand, within Synpcc7942_0057 at 60.011 kb on + strand, within Synpcc7942_0057 at 60.017 kb on + strand, within Synpcc7942_0057 at 60.018 kb on - strand, within Synpcc7942_0057 at 60.047 kb on + strand, within Synpcc7942_0057 at 60.066 kb on - strand, within Synpcc7942_0057 at 60.066 kb on - strand, within Synpcc7942_0057
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.00625 mg/ml remove 56,953 + Synpcc7942_0054 0.69 -0.2 56,961 - Synpcc7942_0054 0.70 -2.2 57,014 + Synpcc7942_0054 0.77 -2.2 57,014 - Synpcc7942_0054 0.77 +1.8 57,022 - Synpcc7942_0054 0.78 -1.2 57,147 + +2.8 57,278 + -2.8 57,329 - Synpcc7942_0055 0.15 +0.9 57,386 + Synpcc7942_0055 0.24 -2.8 57,483 - Synpcc7942_0055 0.38 -1.2 57,528 - Synpcc7942_0055 0.45 -2.2 57,687 - Synpcc7942_0055 0.68 -1.2 58,021 + +1.7 58,064 + rfbE Synpcc7942_0056 0.11 -1.8 58,067 - rfbE Synpcc7942_0056 0.11 -1.2 58,071 + rfbE Synpcc7942_0056 0.12 -1.2 58,221 - rfbE Synpcc7942_0056 0.25 -2.8 58,258 + -0.2 58,276 - rfbE Synpcc7942_0056 0.30 -0.2 58,484 + rfbE Synpcc7942_0056 0.48 -2.2 58,545 + rfbE Synpcc7942_0056 0.54 -2.8 58,568 + rfbE Synpcc7942_0056 0.56 -2.2 58,706 + rfbE Synpcc7942_0056 0.68 +1.9 58,717 + rfbE Synpcc7942_0056 0.69 +4.3 58,828 + rfbE Synpcc7942_0056 0.79 -3.0 58,864 - rfbE Synpcc7942_0056 0.82 +3.1 58,884 - rfbE Synpcc7942_0056 0.84 -0.6 59,064 + +0.8 59,203 + Synpcc7942_0057 0.11 -1.8 59,203 + Synpcc7942_0057 0.11 -0.2 59,211 - Synpcc7942_0057 0.11 -2.2 59,318 + Synpcc7942_0057 0.20 -0.2 59,319 + Synpcc7942_0057 0.20 -2.2 59,326 - Synpcc7942_0057 0.21 +2.6 59,491 + Synpcc7942_0057 0.34 -2.2 59,503 + Synpcc7942_0057 0.35 -3.0 59,511 - Synpcc7942_0057 0.36 -2.2 59,561 - Synpcc7942_0057 0.40 +0.8 59,571 - Synpcc7942_0057 0.40 -2.2 59,620 + Synpcc7942_0057 0.44 +0.6 59,622 - Synpcc7942_0057 0.45 -1.2 59,628 - Synpcc7942_0057 0.45 -0.2 59,646 - Synpcc7942_0057 0.47 +1.6 59,660 - Synpcc7942_0057 0.48 +2.3 59,677 + Synpcc7942_0057 0.49 -0.2 59,677 + Synpcc7942_0057 0.49 -1.8 59,718 + Synpcc7942_0057 0.52 +3.0 59,719 - Synpcc7942_0057 0.52 +1.0 59,752 + Synpcc7942_0057 0.55 +3.0 59,779 - Synpcc7942_0057 0.57 -0.1 59,843 + Synpcc7942_0057 0.63 +3.3 59,846 - Synpcc7942_0057 0.63 -1.2 59,908 - Synpcc7942_0057 0.68 -1.2 59,920 + Synpcc7942_0057 0.69 -1.2 59,928 - Synpcc7942_0057 0.69 -1.2 59,950 + Synpcc7942_0057 0.71 +0.4 59,956 - Synpcc7942_0057 0.72 -1.2 59,958 - Synpcc7942_0057 0.72 +2.7 59,973 - Synpcc7942_0057 0.73 +1.6 60,011 + Synpcc7942_0057 0.76 -0.2 60,017 + Synpcc7942_0057 0.77 +1.0 60,018 - Synpcc7942_0057 0.77 +2.7 60,047 + Synpcc7942_0057 0.79 +0.7 60,066 - Synpcc7942_0057 0.81 +2.3 60,066 - Synpcc7942_0057 0.81 +0.8
Or see this region's nucleotide sequence