Experiment: Gelatin (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01530 and SMc01529 are separated by 227 nucleotides SMc01529 and SMc01528 overlap by 4 nucleotides SMc01528 and SMc01527 overlap by 4 nucleotides SMc01527 and SMc01526 overlap by 4 nucleotides
SMc01530: SMc01530 - transposase ISRM3, at 2,602,399 to 2,603,595
SMc01530
SMc01529: SMc01529 - peptide ABC transporter ATP-binding protein, at 2,603,823 to 2,604,590
SMc01529
SMc01528: SMc01528 - peptide ABC transporter ATP-binding protein, at 2,604,587 to 2,605,420
SMc01528
SMc01527: SMc01527 - peptide ABC transporter permease, at 2,605,417 to 2,606,349
SMc01527
SMc01526: SMc01526 - peptide ABC transporter permease, at 2,606,346 to 2,607,389
SMc01526
Position (kb)
2604
2605
2606 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2603.715 kb on - strand at 2603.792 kb on + strand at 2603.887 kb on + strand at 2603.887 kb on + strand at 2604.359 kb on - strand, within SMc01529 at 2604.676 kb on + strand, within SMc01528 at 2604.677 kb on - strand, within SMc01528 at 2604.677 kb on - strand, within SMc01528 at 2604.678 kb on + strand, within SMc01528 at 2604.738 kb on + strand, within SMc01528 at 2604.739 kb on - strand, within SMc01528 at 2604.739 kb on - strand, within SMc01528 at 2605.123 kb on - strand, within SMc01528 at 2605.361 kb on + strand at 2605.362 kb on - strand at 2605.748 kb on + strand, within SMc01527 at 2605.749 kb on - strand, within SMc01527 at 2606.039 kb on - strand, within SMc01527 at 2606.087 kb on + strand, within SMc01527 at 2606.087 kb on + strand, within SMc01527 at 2606.088 kb on - strand, within SMc01527 at 2606.088 kb on - strand, within SMc01527 at 2606.088 kb on - strand, within SMc01527 at 2606.088 kb on - strand, within SMc01527 at 2606.250 kb on + strand, within SMc01527 at 2606.251 kb on - strand, within SMc01527 at 2606.253 kb on - strand, within SMc01527
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (N) remove 2,603,715 - +0.2 2,603,792 + +0.2 2,603,887 + -0.1 2,603,887 + -0.1 2,604,359 - SMc01529 0.70 -0.4 2,604,676 + SMc01528 0.11 +1.4 2,604,677 - SMc01528 0.11 +0.3 2,604,677 - SMc01528 0.11 +0.2 2,604,678 + SMc01528 0.11 +0.1 2,604,738 + SMc01528 0.18 +2.3 2,604,739 - SMc01528 0.18 +0.4 2,604,739 - SMc01528 0.18 +0.5 2,605,123 - SMc01528 0.64 +0.7 2,605,361 + +1.3 2,605,362 - -0.1 2,605,748 + SMc01527 0.35 +3.2 2,605,749 - SMc01527 0.36 -0.3 2,606,039 - SMc01527 0.67 +0.4 2,606,087 + SMc01527 0.72 +0.7 2,606,087 + SMc01527 0.72 +0.5 2,606,088 - SMc01527 0.72 -0.8 2,606,088 - SMc01527 0.72 -0.0 2,606,088 - SMc01527 0.72 +0.4 2,606,088 - SMc01527 0.72 -0.3 2,606,250 + SMc01527 0.89 +1.4 2,606,251 - SMc01527 0.89 +0.4 2,606,253 - SMc01527 0.90 +0.5
Or see this region's nucleotide sequence