Strain Fitness in Sinorhizobium meliloti 1021 around SMc01528

Experiment: Gelatin (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01530 and SMc01529 are separated by 227 nucleotidesSMc01529 and SMc01528 overlap by 4 nucleotidesSMc01528 and SMc01527 overlap by 4 nucleotidesSMc01527 and SMc01526 overlap by 4 nucleotides SMc01530: SMc01530 - transposase ISRM3, at 2,602,399 to 2,603,595 SMc01530 SMc01529: SMc01529 - peptide ABC transporter ATP-binding protein, at 2,603,823 to 2,604,590 SMc01529 SMc01528: SMc01528 - peptide ABC transporter ATP-binding protein, at 2,604,587 to 2,605,420 SMc01528 SMc01527: SMc01527 - peptide ABC transporter permease, at 2,605,417 to 2,606,349 SMc01527 SMc01526: SMc01526 - peptide ABC transporter permease, at 2,606,346 to 2,607,389 SMc01526 Position (kb) 2604 2605 2606Strain fitness (log2 ratio) -1 0 1 2 3at 2603.715 kb on - strandat 2603.792 kb on + strandat 2603.887 kb on + strandat 2603.887 kb on + strandat 2604.359 kb on - strand, within SMc01529at 2604.676 kb on + strand, within SMc01528at 2604.677 kb on - strand, within SMc01528at 2604.677 kb on - strand, within SMc01528at 2604.678 kb on + strand, within SMc01528at 2604.738 kb on + strand, within SMc01528at 2604.739 kb on - strand, within SMc01528at 2604.739 kb on - strand, within SMc01528at 2605.123 kb on - strand, within SMc01528at 2605.361 kb on + strandat 2605.362 kb on - strandat 2605.748 kb on + strand, within SMc01527at 2605.749 kb on - strand, within SMc01527at 2606.039 kb on - strand, within SMc01527at 2606.087 kb on + strand, within SMc01527at 2606.087 kb on + strand, within SMc01527at 2606.088 kb on - strand, within SMc01527at 2606.088 kb on - strand, within SMc01527at 2606.088 kb on - strand, within SMc01527at 2606.088 kb on - strand, within SMc01527at 2606.250 kb on + strand, within SMc01527at 2606.251 kb on - strand, within SMc01527at 2606.253 kb on - strand, within SMc01527

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Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (N)
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2,603,715 - +0.2
2,603,792 + +0.2
2,603,887 + -0.1
2,603,887 + -0.1
2,604,359 - SMc01529 0.70 -0.4
2,604,676 + SMc01528 0.11 +1.4
2,604,677 - SMc01528 0.11 +0.3
2,604,677 - SMc01528 0.11 +0.2
2,604,678 + SMc01528 0.11 +0.1
2,604,738 + SMc01528 0.18 +2.3
2,604,739 - SMc01528 0.18 +0.4
2,604,739 - SMc01528 0.18 +0.5
2,605,123 - SMc01528 0.64 +0.7
2,605,361 + +1.3
2,605,362 - -0.1
2,605,748 + SMc01527 0.35 +3.2
2,605,749 - SMc01527 0.36 -0.3
2,606,039 - SMc01527 0.67 +0.4
2,606,087 + SMc01527 0.72 +0.7
2,606,087 + SMc01527 0.72 +0.5
2,606,088 - SMc01527 0.72 -0.8
2,606,088 - SMc01527 0.72 -0.0
2,606,088 - SMc01527 0.72 +0.4
2,606,088 - SMc01527 0.72 -0.3
2,606,250 + SMc01527 0.89 +1.4
2,606,251 - SMc01527 0.89 +0.4
2,606,253 - SMc01527 0.90 +0.5

Or see this region's nucleotide sequence