Experiment: Gelatin (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00506 and SMc00505 are separated by 161 nucleotides SMc00505 and SMc00504 are separated by 26 nucleotides
SMc00506: SMc00506 - hypothetical protein, at 1,905,845 to 1,906,654
SMc00506
SMc00505: SMc00505 - hypothetical protein, at 1,906,816 to 1,907,370
SMc00505
SMc00504: SMc00504 - transcriptional regulator, at 1,907,397 to 1,908,635
SMc00504
Position (kb)
1906
1907
1908 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1905.883 kb on - strand at 1906.196 kb on - strand, within SMc00506 at 1906.226 kb on + strand, within SMc00506 at 1906.226 kb on + strand, within SMc00506 at 1906.226 kb on + strand, within SMc00506 at 1906.227 kb on - strand, within SMc00506 at 1906.228 kb on + strand, within SMc00506 at 1906.228 kb on + strand, within SMc00506 at 1906.228 kb on + strand, within SMc00506 at 1906.228 kb on + strand, within SMc00506 at 1906.229 kb on - strand, within SMc00506 at 1906.229 kb on - strand, within SMc00506 at 1906.229 kb on - strand, within SMc00506 at 1906.230 kb on + strand, within SMc00506 at 1906.230 kb on + strand, within SMc00506 at 1906.231 kb on - strand, within SMc00506 at 1906.231 kb on - strand, within SMc00506 at 1906.231 kb on - strand, within SMc00506 at 1906.231 kb on - strand, within SMc00506 at 1906.383 kb on + strand, within SMc00506 at 1906.500 kb on + strand, within SMc00506 at 1906.501 kb on - strand, within SMc00506 at 1906.502 kb on + strand, within SMc00506 at 1906.502 kb on + strand, within SMc00506 at 1906.502 kb on + strand, within SMc00506 at 1906.502 kb on + strand, within SMc00506 at 1906.502 kb on + strand, within SMc00506 at 1906.503 kb on - strand, within SMc00506 at 1906.503 kb on - strand, within SMc00506 at 1906.503 kb on - strand, within SMc00506 at 1906.599 kb on - strand at 1906.745 kb on + strand at 1906.745 kb on + strand at 1907.156 kb on - strand, within SMc00505 at 1907.222 kb on - strand, within SMc00505 at 1907.368 kb on + strand at 1907.489 kb on + strand at 1907.490 kb on - strand at 1907.935 kb on + strand, within SMc00504 at 1907.935 kb on + strand, within SMc00504 at 1907.936 kb on - strand, within SMc00504 at 1907.936 kb on - strand, within SMc00504 at 1907.982 kb on - strand, within SMc00504 at 1908.141 kb on + strand, within SMc00504 at 1908.177 kb on - strand, within SMc00504 at 1908.195 kb on - strand, within SMc00504 at 1908.266 kb on + strand, within SMc00504
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (N) remove 1,905,883 - +0.2 1,906,196 - SMc00506 0.43 +0.9 1,906,226 + SMc00506 0.47 -0.9 1,906,226 + SMc00506 0.47 +0.0 1,906,226 + SMc00506 0.47 +0.8 1,906,227 - SMc00506 0.47 -1.1 1,906,228 + SMc00506 0.47 +0.3 1,906,228 + SMc00506 0.47 -0.0 1,906,228 + SMc00506 0.47 -2.5 1,906,228 + SMc00506 0.47 +0.1 1,906,229 - SMc00506 0.47 -0.0 1,906,229 - SMc00506 0.47 +0.3 1,906,229 - SMc00506 0.47 -3.4 1,906,230 + SMc00506 0.48 -0.1 1,906,230 + SMc00506 0.48 -0.7 1,906,231 - SMc00506 0.48 +1.0 1,906,231 - SMc00506 0.48 +0.7 1,906,231 - SMc00506 0.48 -0.2 1,906,231 - SMc00506 0.48 -0.3 1,906,383 + SMc00506 0.66 -1.2 1,906,500 + SMc00506 0.81 +0.0 1,906,501 - SMc00506 0.81 -1.2 1,906,502 + SMc00506 0.81 -0.1 1,906,502 + SMc00506 0.81 -0.8 1,906,502 + SMc00506 0.81 +0.2 1,906,502 + SMc00506 0.81 +0.3 1,906,502 + SMc00506 0.81 +0.6 1,906,503 - SMc00506 0.81 -0.2 1,906,503 - SMc00506 0.81 +0.4 1,906,503 - SMc00506 0.81 +0.7 1,906,599 - -0.3 1,906,745 + -0.1 1,906,745 + -0.9 1,907,156 - SMc00505 0.61 +0.2 1,907,222 - SMc00505 0.73 +1.6 1,907,368 + -0.7 1,907,489 + -0.3 1,907,490 - -1.5 1,907,935 + SMc00504 0.43 +0.5 1,907,935 + SMc00504 0.43 +0.5 1,907,936 - SMc00504 0.44 +1.4 1,907,936 - SMc00504 0.44 +2.0 1,907,982 - SMc00504 0.47 -0.1 1,908,141 + SMc00504 0.60 +1.8 1,908,177 - SMc00504 0.63 -0.3 1,908,195 - SMc00504 0.64 -0.5 1,908,266 + SMc00504 0.70 -0.1
Or see this region's nucleotide sequence