Strain Fitness in Sinorhizobium meliloti 1021 around SMc00505

Experiment: Gelatin (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00506 and SMc00505 are separated by 161 nucleotidesSMc00505 and SMc00504 are separated by 26 nucleotides SMc00506: SMc00506 - hypothetical protein, at 1,905,845 to 1,906,654 SMc00506 SMc00505: SMc00505 - hypothetical protein, at 1,906,816 to 1,907,370 SMc00505 SMc00504: SMc00504 - transcriptional regulator, at 1,907,397 to 1,908,635 SMc00504 Position (kb) 1906 1907 1908Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1905.883 kb on - strandat 1906.196 kb on - strand, within SMc00506at 1906.226 kb on + strand, within SMc00506at 1906.226 kb on + strand, within SMc00506at 1906.226 kb on + strand, within SMc00506at 1906.227 kb on - strand, within SMc00506at 1906.228 kb on + strand, within SMc00506at 1906.228 kb on + strand, within SMc00506at 1906.228 kb on + strand, within SMc00506at 1906.228 kb on + strand, within SMc00506at 1906.229 kb on - strand, within SMc00506at 1906.229 kb on - strand, within SMc00506at 1906.229 kb on - strand, within SMc00506at 1906.230 kb on + strand, within SMc00506at 1906.230 kb on + strand, within SMc00506at 1906.231 kb on - strand, within SMc00506at 1906.231 kb on - strand, within SMc00506at 1906.231 kb on - strand, within SMc00506at 1906.231 kb on - strand, within SMc00506at 1906.383 kb on + strand, within SMc00506at 1906.500 kb on + strand, within SMc00506at 1906.501 kb on - strand, within SMc00506at 1906.502 kb on + strand, within SMc00506at 1906.502 kb on + strand, within SMc00506at 1906.502 kb on + strand, within SMc00506at 1906.502 kb on + strand, within SMc00506at 1906.502 kb on + strand, within SMc00506at 1906.503 kb on - strand, within SMc00506at 1906.503 kb on - strand, within SMc00506at 1906.503 kb on - strand, within SMc00506at 1906.599 kb on - strandat 1906.745 kb on + strandat 1906.745 kb on + strandat 1907.156 kb on - strand, within SMc00505at 1907.222 kb on - strand, within SMc00505at 1907.368 kb on + strandat 1907.489 kb on + strandat 1907.490 kb on - strandat 1907.935 kb on + strand, within SMc00504at 1907.935 kb on + strand, within SMc00504at 1907.936 kb on - strand, within SMc00504at 1907.936 kb on - strand, within SMc00504at 1907.982 kb on - strand, within SMc00504at 1908.141 kb on + strand, within SMc00504at 1908.177 kb on - strand, within SMc00504at 1908.195 kb on - strand, within SMc00504at 1908.266 kb on + strand, within SMc00504

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Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (N)
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1,905,883 - +0.2
1,906,196 - SMc00506 0.43 +0.9
1,906,226 + SMc00506 0.47 -0.9
1,906,226 + SMc00506 0.47 +0.0
1,906,226 + SMc00506 0.47 +0.8
1,906,227 - SMc00506 0.47 -1.1
1,906,228 + SMc00506 0.47 +0.3
1,906,228 + SMc00506 0.47 -0.0
1,906,228 + SMc00506 0.47 -2.5
1,906,228 + SMc00506 0.47 +0.1
1,906,229 - SMc00506 0.47 -0.0
1,906,229 - SMc00506 0.47 +0.3
1,906,229 - SMc00506 0.47 -3.4
1,906,230 + SMc00506 0.48 -0.1
1,906,230 + SMc00506 0.48 -0.7
1,906,231 - SMc00506 0.48 +1.0
1,906,231 - SMc00506 0.48 +0.7
1,906,231 - SMc00506 0.48 -0.2
1,906,231 - SMc00506 0.48 -0.3
1,906,383 + SMc00506 0.66 -1.2
1,906,500 + SMc00506 0.81 +0.0
1,906,501 - SMc00506 0.81 -1.2
1,906,502 + SMc00506 0.81 -0.1
1,906,502 + SMc00506 0.81 -0.8
1,906,502 + SMc00506 0.81 +0.2
1,906,502 + SMc00506 0.81 +0.3
1,906,502 + SMc00506 0.81 +0.6
1,906,503 - SMc00506 0.81 -0.2
1,906,503 - SMc00506 0.81 +0.4
1,906,503 - SMc00506 0.81 +0.7
1,906,599 - -0.3
1,906,745 + -0.1
1,906,745 + -0.9
1,907,156 - SMc00505 0.61 +0.2
1,907,222 - SMc00505 0.73 +1.6
1,907,368 + -0.7
1,907,489 + -0.3
1,907,490 - -1.5
1,907,935 + SMc00504 0.43 +0.5
1,907,935 + SMc00504 0.43 +0.5
1,907,936 - SMc00504 0.44 +1.4
1,907,936 - SMc00504 0.44 +2.0
1,907,982 - SMc00504 0.47 -0.1
1,908,141 + SMc00504 0.60 +1.8
1,908,177 - SMc00504 0.63 -0.3
1,908,195 - SMc00504 0.64 -0.5
1,908,266 + SMc00504 0.70 -0.1

Or see this region's nucleotide sequence