Experiment: Gelatin (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1513 and SMa1514 overlap by 1 nucleotides SMa1514 and SMa1515 are separated by 45 nucleotides SMa1515 and SMa1516 are separated by 353 nucleotides
SMa1513: SMa1513 - ABC transporter permease, at 833,962 to 834,984
SMa1513
SMa1514: SMa1514 - ABC transporter permease, at 834,984 to 835,904
SMa1514
SMa1515: SMa1515 - hypothetical protein, at 835,950 to 836,141
SMa1515
SMa1516: SMa1516 - NuoH2 NADH:ubiquinone oxidoreductase subunit 1 (chain H), at 836,495 to 837,481
SMa1516
Position (kb) 834
835
836 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 834.240 kb on - strand, within SMa1513 at 834.383 kb on - strand, within SMa1513 at 834.383 kb on - strand, within SMa1513 at 834.383 kb on - strand, within SMa1513 at 834.448 kb on + strand, within SMa1513 at 834.499 kb on + strand, within SMa1513 at 834.499 kb on + strand, within SMa1513 at 834.586 kb on + strand, within SMa1513 at 834.587 kb on - strand, within SMa1513 at 834.587 kb on - strand, within SMa1513 at 834.628 kb on + strand, within SMa1513 at 834.628 kb on + strand, within SMa1513 at 834.952 kb on + strand at 834.952 kb on + strand at 834.955 kb on + strand at 834.956 kb on - strand at 835.039 kb on + strand at 835.039 kb on + strand at 835.248 kb on + strand, within SMa1514 at 835.249 kb on - strand, within SMa1514 at 835.249 kb on - strand, within SMa1514 at 835.594 kb on - strand, within SMa1514 at 835.594 kb on - strand, within SMa1514 at 835.608 kb on + strand, within SMa1514 at 835.608 kb on + strand, within SMa1514 at 835.608 kb on + strand, within SMa1514 at 835.800 kb on + strand, within SMa1514 at 835.816 kb on + strand at 835.816 kb on + strand at 835.816 kb on + strand at 835.816 kb on + strand at 835.816 kb on + strand at 835.817 kb on - strand at 835.817 kb on - strand at 835.817 kb on - strand at 835.817 kb on - strand at 835.817 kb on - strand at 835.817 kb on - strand at 835.817 kb on - strand at 835.902 kb on + strand at 835.962 kb on + strand at 835.962 kb on + strand at 835.963 kb on - strand at 836.120 kb on + strand, within SMa1515 at 836.120 kb on + strand, within SMa1515 at 836.120 kb on + strand, within SMa1515 at 836.121 kb on - strand, within SMa1515 at 836.121 kb on - strand, within SMa1515 at 836.273 kb on + strand at 836.388 kb on + strand at 836.503 kb on + strand at 836.700 kb on + strand, within SMa1516 at 836.701 kb on + strand, within SMa1516 at 836.701 kb on + strand, within SMa1516 at 836.701 kb on + strand, within SMa1516 at 836.702 kb on - strand, within SMa1516 at 836.702 kb on - strand, within SMa1516 at 836.702 kb on - strand, within SMa1516 at 836.702 kb on - strand, within SMa1516 at 836.703 kb on + strand, within SMa1516 at 836.704 kb on - strand, within SMa1516 at 836.831 kb on + strand, within SMa1516 at 836.831 kb on + strand, within SMa1516 at 836.831 kb on + strand, within SMa1516 at 836.832 kb on - strand, within SMa1516 at 836.832 kb on - strand, within SMa1516 at 836.832 kb on - strand, within SMa1516 at 836.850 kb on + strand, within SMa1516 at 836.851 kb on - strand, within SMa1516 at 836.851 kb on - strand, within SMa1516 at 836.891 kb on + strand, within SMa1516 at 836.891 kb on + strand, within SMa1516 at 836.892 kb on - strand, within SMa1516 at 836.892 kb on - strand, within SMa1516 at 836.892 kb on - strand, within SMa1516 at 836.892 kb on - strand, within SMa1516
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (N) remove 834,240 - SMa1513 0.27 -3.2 834,383 - SMa1513 0.41 +0.5 834,383 - SMa1513 0.41 -0.0 834,383 - SMa1513 0.41 -0.4 834,448 + SMa1513 0.48 -1.0 834,499 + SMa1513 0.52 -0.2 834,499 + SMa1513 0.52 +0.3 834,586 + SMa1513 0.61 -0.1 834,587 - SMa1513 0.61 +0.6 834,587 - SMa1513 0.61 +0.0 834,628 + SMa1513 0.65 -0.2 834,628 + SMa1513 0.65 -0.5 834,952 + +0.3 834,952 + +1.7 834,955 + +2.1 834,956 - +0.8 835,039 + -0.1 835,039 + -0.4 835,248 + SMa1514 0.29 -1.6 835,249 - SMa1514 0.29 +0.1 835,249 - SMa1514 0.29 +0.0 835,594 - SMa1514 0.66 -1.2 835,594 - SMa1514 0.66 -0.4 835,608 + SMa1514 0.68 +0.4 835,608 + SMa1514 0.68 -1.1 835,608 + SMa1514 0.68 -0.0 835,800 + SMa1514 0.89 -0.9 835,816 + +0.2 835,816 + -3.7 835,816 + -2.0 835,816 + -0.1 835,816 + -1.7 835,817 - -0.3 835,817 - +0.7 835,817 - -0.5 835,817 - -0.4 835,817 - +4.6 835,817 - +0.2 835,817 - -0.3 835,902 + -0.2 835,962 + -0.3 835,962 + +0.3 835,963 - +0.9 836,120 + SMa1515 0.89 -0.0 836,120 + SMa1515 0.89 +0.2 836,120 + SMa1515 0.89 +0.3 836,121 - SMa1515 0.89 +0.2 836,121 - SMa1515 0.89 -1.7 836,273 + +1.3 836,388 + -0.1 836,503 + -0.4 836,700 + SMa1516 0.21 +2.3 836,701 + SMa1516 0.21 +0.7 836,701 + SMa1516 0.21 +0.4 836,701 + SMa1516 0.21 -0.9 836,702 - SMa1516 0.21 -0.9 836,702 - SMa1516 0.21 +0.1 836,702 - SMa1516 0.21 -1.0 836,702 - SMa1516 0.21 +1.4 836,703 + SMa1516 0.21 -0.3 836,704 - SMa1516 0.21 +0.7 836,831 + SMa1516 0.34 +0.3 836,831 + SMa1516 0.34 -0.2 836,831 + SMa1516 0.34 -0.2 836,832 - SMa1516 0.34 -1.0 836,832 - SMa1516 0.34 -0.9 836,832 - SMa1516 0.34 -1.7 836,850 + SMa1516 0.36 +0.4 836,851 - SMa1516 0.36 -0.4 836,851 - SMa1516 0.36 -0.6 836,891 + SMa1516 0.40 +0.3 836,891 + SMa1516 0.40 +0.4 836,892 - SMa1516 0.40 -0.2 836,892 - SMa1516 0.40 +0.9 836,892 - SMa1516 0.40 +0.1 836,892 - SMa1516 0.40 +0.3
Or see this region's nucleotide sequence