Experiment: Gelatin (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1374 and SMa1373 overlap by 1 nucleotides SMa1373 and SMa1375 are separated by 78 nucleotides SMa1375 and SMa1377 are separated by 29 nucleotides
SMa1374: SMa1374 - ABC transporter permease, at 754,635 to 755,594
SMa1374
SMa1373: SMa1373 - ABC transporter permease, at 755,594 to 756,514
SMa1373
SMa1375: SMa1375 - ABC transporter substrate-binding protein, at 756,593 to 758,077
SMa1375
SMa1377: SMa1377 - amidase, at 758,107 to 759,522
SMa1377
Position (kb) 756
757
758
759 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 755.819 kb on - strand, within SMa1373 at 755.819 kb on - strand, within SMa1373 at 755.846 kb on + strand, within SMa1373 at 755.851 kb on + strand, within SMa1373 at 755.852 kb on - strand, within SMa1373 at 755.866 kb on + strand, within SMa1373 at 755.866 kb on + strand, within SMa1373 at 755.907 kb on + strand, within SMa1373 at 755.907 kb on + strand, within SMa1373 at 755.907 kb on + strand, within SMa1373 at 755.908 kb on - strand, within SMa1373 at 755.983 kb on + strand, within SMa1373 at 755.984 kb on - strand, within SMa1373 at 756.514 kb on + strand at 756.514 kb on + strand at 756.514 kb on + strand at 756.514 kb on + strand at 756.515 kb on - strand at 756.515 kb on - strand at 756.573 kb on + strand at 756.574 kb on - strand at 756.574 kb on - strand at 756.595 kb on - strand at 756.602 kb on + strand at 756.672 kb on + strand at 756.672 kb on + strand at 756.672 kb on + strand at 756.705 kb on + strand at 756.705 kb on + strand at 756.706 kb on - strand at 756.706 kb on - strand at 756.706 kb on - strand at 757.126 kb on - strand, within SMa1375 at 757.126 kb on - strand, within SMa1375 at 757.195 kb on - strand, within SMa1375 at 757.195 kb on - strand, within SMa1375 at 757.273 kb on + strand, within SMa1375 at 757.274 kb on - strand, within SMa1375 at 757.530 kb on + strand, within SMa1375 at 757.531 kb on - strand, within SMa1375 at 757.531 kb on - strand, within SMa1375 at 757.605 kb on + strand, within SMa1375 at 757.605 kb on + strand, within SMa1375 at 757.606 kb on - strand, within SMa1375 at 757.691 kb on - strand, within SMa1375 at 757.698 kb on + strand, within SMa1375 at 757.698 kb on + strand, within SMa1375 at 757.699 kb on - strand, within SMa1375 at 757.905 kb on + strand, within SMa1375 at 757.905 kb on + strand, within SMa1375 at 757.906 kb on - strand, within SMa1375 at 757.906 kb on - strand, within SMa1375 at 757.946 kb on - strand at 757.946 kb on - strand at 758.067 kb on - strand at 758.105 kb on + strand at 758.106 kb on - strand at 758.106 kb on - strand at 758.106 kb on - strand at 758.131 kb on + strand at 758.132 kb on - strand at 758.333 kb on + strand, within SMa1377 at 758.333 kb on + strand, within SMa1377 at 758.334 kb on - strand, within SMa1377 at 758.372 kb on + strand, within SMa1377 at 758.372 kb on + strand, within SMa1377 at 758.372 kb on + strand, within SMa1377 at 758.373 kb on - strand, within SMa1377 at 758.373 kb on - strand, within SMa1377 at 758.449 kb on - strand, within SMa1377 at 758.516 kb on - strand, within SMa1377 at 758.516 kb on - strand, within SMa1377 at 758.737 kb on + strand, within SMa1377 at 758.738 kb on - strand, within SMa1377 at 758.791 kb on + strand, within SMa1377 at 758.932 kb on - strand, within SMa1377
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (N) remove 755,819 - SMa1373 0.24 -2.3 755,819 - SMa1373 0.24 -1.9 755,846 + SMa1373 0.27 -0.5 755,851 + SMa1373 0.28 -0.2 755,852 - SMa1373 0.28 +1.2 755,866 + SMa1373 0.30 +0.0 755,866 + SMa1373 0.30 -1.1 755,907 + SMa1373 0.34 +0.2 755,907 + SMa1373 0.34 -0.8 755,907 + SMa1373 0.34 +0.8 755,908 - SMa1373 0.34 +1.0 755,983 + SMa1373 0.42 -2.0 755,984 - SMa1373 0.42 +0.8 756,514 + -0.2 756,514 + -2.4 756,514 + -0.1 756,514 + -0.3 756,515 - +1.3 756,515 - -0.9 756,573 + -3.2 756,574 - +0.2 756,574 - +0.6 756,595 - -1.5 756,602 + -0.0 756,672 + +1.4 756,672 + -2.4 756,672 + -3.5 756,705 + -0.3 756,705 + +0.9 756,706 - +1.7 756,706 - -0.7 756,706 - +0.1 757,126 - SMa1375 0.36 +0.3 757,126 - SMa1375 0.36 +0.9 757,195 - SMa1375 0.41 +0.3 757,195 - SMa1375 0.41 +0.6 757,273 + SMa1375 0.46 +0.8 757,274 - SMa1375 0.46 -0.0 757,530 + SMa1375 0.63 -0.7 757,531 - SMa1375 0.63 +0.1 757,531 - SMa1375 0.63 +1.2 757,605 + SMa1375 0.68 -0.1 757,605 + SMa1375 0.68 -2.7 757,606 - SMa1375 0.68 +0.7 757,691 - SMa1375 0.74 -0.1 757,698 + SMa1375 0.74 +1.9 757,698 + SMa1375 0.74 +0.2 757,699 - SMa1375 0.74 -0.6 757,905 + SMa1375 0.88 +0.0 757,905 + SMa1375 0.88 -0.1 757,906 - SMa1375 0.88 -0.7 757,906 - SMa1375 0.88 +0.7 757,946 - +0.9 757,946 - +0.6 758,067 - -2.7 758,105 + -0.1 758,106 - +0.2 758,106 - -0.5 758,106 - -1.6 758,131 + -2.0 758,132 - +0.4 758,333 + SMa1377 0.16 -0.9 758,333 + SMa1377 0.16 -0.2 758,334 - SMa1377 0.16 -1.5 758,372 + SMa1377 0.19 -1.8 758,372 + SMa1377 0.19 -0.5 758,372 + SMa1377 0.19 +0.0 758,373 - SMa1377 0.19 +1.7 758,373 - SMa1377 0.19 -0.6 758,449 - SMa1377 0.24 -0.8 758,516 - SMa1377 0.29 +0.6 758,516 - SMa1377 0.29 -0.9 758,737 + SMa1377 0.44 -0.6 758,738 - SMa1377 0.45 +1.4 758,791 + SMa1377 0.48 +0.0 758,932 - SMa1377 0.58 -1.1
Or see this region's nucleotide sequence